Wall clock time and date at job start Fri Apr 10 2020 17:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47239 * 2 1 4 4 C 1.50695 * 109.47162 * 239.99445 * 2 1 3 5 5 H 1.08000 * 120.00347 * 275.00794 * 4 2 1 6 6 C 1.37879 * 119.99892 * 94.99941 * 4 2 1 7 7 N 1.31507 * 120.00472 * 184.91375 * 6 4 2 8 8 Si 1.86802 * 119.99928 * 4.92161 * 6 4 2 9 9 H 1.48497 * 109.47562 * 84.82991 * 8 6 4 10 10 H 1.48500 * 109.47279 * 204.83092 * 8 6 4 11 11 H 1.48498 * 109.47101 * 324.82856 * 8 6 4 12 12 N 1.46494 * 109.46982 * 119.99453 * 2 1 3 13 13 C 1.34783 * 120.00384 * 275.27567 * 12 2 1 14 14 O 1.21622 * 119.99655 * 359.72399 * 13 12 2 15 15 C 1.47285 * 119.99861 * 179.72911 * 13 12 2 16 16 C 1.39929 * 120.13683 * 359.71997 * 15 13 12 17 17 C 1.37895 * 119.98007 * 179.79210 * 16 15 13 18 18 C 1.39735 * 120.11052 * 0.49307 * 17 16 15 19 19 C 1.38597 * 120.14744 * 359.73461 * 18 17 16 20 20 C 1.38461 * 120.18012 * 0.02813 * 19 18 17 21 21 O 1.35722 * 120.07728 * 179.97438 * 20 19 18 22 22 O 1.36369 * 108.56249 * 179.73572 * 18 17 16 23 23 C 1.43955 * 105.55820 * 17.36772 * 22 18 17 24 24 O 1.36638 * 131.35292 * 180.17811 * 17 16 15 25 25 H 1.09010 * 109.47030 * 295.04043 * 1 2 3 26 26 H 1.09003 * 109.47583 * 55.03755 * 1 2 3 27 27 H 1.08995 * 109.47327 * 175.04341 * 1 2 3 28 28 H 0.97002 * 120.01001 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00139 * 95.00182 * 12 2 1 30 30 H 1.08005 * 120.01024 * 359.97438 * 16 15 13 31 31 H 1.07998 * 119.91199 * 180.02562 * 19 18 17 32 32 H 0.96707 * 114.00275 * 270.01935 * 21 20 19 33 33 H 1.08998 * 110.55667 * 91.28454 * 23 22 18 34 34 H 1.08994 * 110.56011 * 214.12196 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.1354 -1.7856 -1.2289 6 6 2.3602 0.0119 -2.3580 7 7 2.7059 -0.6133 -3.4621 8 14 2.3136 1.8789 -2.3175 9 1 3.5991 2.3948 -1.7823 10 1 2.1058 2.3989 -3.6929 11 1 1.1987 2.3274 -1.4451 12 7 2.0183 -0.6905 1.1962 13 6 2.1417 -0.0194 2.3586 14 8 1.8525 1.1607 2.4131 15 6 2.6270 -0.7152 3.5626 16 6 2.9551 -2.0742 3.5044 17 6 3.4132 -2.7214 4.6326 18 6 3.5407 -2.0249 5.8372 19 6 3.2127 -0.6798 5.9016 20 6 2.7565 -0.0198 4.7731 21 8 2.4354 1.2973 4.8387 22 8 4.0028 -2.8850 6.7892 23 6 4.5461 -4.0052 6.0665 24 8 3.7971 -4.0167 4.8370 25 1 -0.3634 0.4350 0.9312 26 1 -0.3634 0.5889 -0.8422 27 1 -0.3634 -1.0238 -0.0888 28 1 2.9370 -0.1051 -4.2554 29 1 2.2490 -1.6316 1.1527 30 1 2.8523 -2.6155 2.5754 31 1 3.3131 -0.1450 6.8345 32 1 1.5114 1.4659 5.0693 33 1 5.6070 -3.8538 5.8671 34 1 4.3880 -4.9308 6.6199 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436617034.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:37 Heat of formation + Delta-G solvation = -109.031884 kcal Electronic energy + Delta-G solvation = -21467.476384 eV Core-core repulsion = 17946.152397 eV Total energy + Delta-G solvation = -3521.323986 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.38669 -39.82658 -38.02068 -36.54639 -35.93950 -34.83812 -32.45033 -31.22806 -29.57507 -29.08405 -26.11058 -25.32770 -23.95923 -23.00018 -21.30576 -19.79016 -19.00319 -18.46318 -17.67652 -17.44340 -16.66680 -16.38168 -15.58548 -15.36069 -14.81803 -14.56111 -14.49339 -14.11757 -13.99778 -13.66952 -13.21558 -13.02076 -12.70744 -12.52155 -12.38686 -11.94774 -11.50341 -11.11388 -10.86868 -10.82355 -10.74079 -10.56471 -9.88403 -9.24855 -9.21683 -9.07929 -8.70975 -8.26256 -8.03342 -6.24166 -4.28369 0.58774 0.94007 2.43151 2.92903 3.14019 3.27266 3.34990 3.42113 3.81219 3.89734 4.16721 4.21541 4.32534 4.41299 4.63974 4.85396 4.91156 5.05266 5.20351 5.29622 5.65709 5.77675 5.83312 5.94963 6.12051 6.33794 6.50552 6.66213 6.80370 6.91825 7.17174 7.35417 7.51779 7.66298 8.10792 8.52742 8.75631 8.91116 9.37541 10.87424 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.024928 B = 0.004654 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.978182 B = 6014.807750 C = 6721.606308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.231 3.769 3 H 0.052 0.948 4 C -0.532 4.532 5 H 0.079 0.921 6 C 0.082 3.918 7 N -0.888 5.888 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.698 5.698 13 C 0.547 3.453 14 O -0.536 6.536 15 C -0.144 4.144 16 C -0.052 4.052 17 C 0.014 3.986 18 C 0.067 3.933 19 C -0.142 4.142 20 C 0.178 3.822 21 O -0.467 6.467 22 O -0.307 6.307 23 C 0.213 3.787 24 O -0.305 6.305 25 H 0.029 0.971 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.268 0.732 29 H 0.392 0.608 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.397 0.603 33 H 0.086 0.914 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -4.919 19.271 19.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.129 3.871 3 H 0.070 0.930 4 C -0.570 4.570 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.524 5.524 8 Si 0.701 3.299 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.184 1.184 12 N -0.347 5.347 13 C 0.332 3.668 14 O -0.415 6.415 15 C -0.148 4.148 16 C -0.072 4.072 17 C -0.030 4.030 18 C 0.022 3.978 19 C -0.162 4.162 20 C 0.131 3.869 21 O -0.278 6.278 22 O -0.223 6.223 23 C 0.101 3.899 24 O -0.221 6.221 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.226 0.774 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.255 0.745 33 H 0.104 0.896 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.686 -4.157 19.016 19.538 hybrid contribution -0.083 0.102 0.091 0.160 sum 1.603 -4.055 19.107 19.599 Atomic orbital electron populations 1.22219 0.98440 1.00637 0.99314 1.19168 0.90990 0.94430 0.82522 0.93004 1.20997 1.45412 0.95638 0.94912 0.90302 1.24935 0.93515 0.98683 0.95121 1.69875 1.44595 1.36256 1.01709 0.86891 0.79900 0.85767 0.77353 1.19782 1.21187 1.18415 1.46645 1.64526 1.13899 1.09599 1.17814 0.79217 0.86810 0.82960 1.90770 1.50966 1.14900 1.84912 1.20459 1.05400 0.92841 0.96070 1.20153 0.98151 0.92479 0.96391 1.19550 1.05105 0.83433 0.94956 1.19687 0.99985 0.91812 0.86324 1.20158 1.06176 0.89780 1.00045 1.17858 0.95393 0.83836 0.89788 1.84789 1.33071 1.17743 1.92160 1.87322 1.75221 1.29807 1.29949 1.25662 0.95156 0.90523 0.78556 1.87426 1.69681 1.23264 1.41734 0.95174 0.92811 0.93377 0.92202 0.77375 0.83455 0.83629 0.74476 0.89634 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.46 37.16 0.35 -2.82 16 2 C 0.23 5.46 2.22 -69.09 -0.15 5.31 16 3 H 0.05 1.34 4.73 -51.93 -0.25 1.09 16 4 C -0.53 -14.17 9.05 -34.44 -0.31 -14.48 16 5 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -26.01 13.96 55.43 0.77 -25.24 16 8 Si 0.87 21.51 26.99 -169.99 -4.59 16.92 16 9 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.26 -6.27 6.82 56.52 0.39 -5.88 16 12 N -0.70 -14.06 5.02 -56.06 -0.28 -14.34 16 13 C 0.55 10.67 7.72 -12.58 -0.10 10.58 16 14 O -0.54 -12.03 14.81 -16.70 -0.25 -12.28 16 15 C -0.14 -2.25 5.89 -104.85 -0.62 -2.87 16 16 C -0.05 -0.72 9.54 -39.07 -0.37 -1.09 16 17 C 0.01 0.18 7.13 -39.15 -0.28 -0.10 16 18 C 0.07 0.83 7.15 -38.89 -0.28 0.55 16 19 C -0.14 -1.71 9.98 -39.37 -0.39 -2.10 16 20 C 0.18 2.52 6.71 -38.76 -0.26 2.26 16 21 O -0.47 -6.62 11.56 -40.83 -0.47 -7.09 16 22 O -0.31 -3.38 11.39 -45.26 -0.52 -3.90 16 23 C 0.21 1.77 8.88 101.05 0.90 2.67 16 24 O -0.30 -3.62 11.41 -46.14 -0.53 -4.14 16 25 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.39 6.95 6.61 -40.82 -0.27 6.68 16 30 H 0.15 1.86 6.39 -52.48 -0.34 1.53 16 31 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 32 H 0.40 3.96 9.06 45.56 0.41 4.37 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.13 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 297.29 15.07 4.48 4.48 Total: -1.00 -33.38 297.29 -5.54 -38.91 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -2.55 Total: 6.61 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.61 Total: 0.07 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.49 Total: -39.58 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -1.76 Total: -27.41 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.59 Total: 16.92 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.38 -5.54 -38.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436617034.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.121 kcal (2) G-P(sol) polarization free energy of solvation -33.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds