Wall clock time and date at job start Fri Apr 10 2020 17:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47239 * 2 1 4 4 C 1.50695 * 109.47162 * 239.99445 * 2 1 3 5 5 H 1.08000 * 120.00347 * 275.00794 * 4 2 1 6 6 C 1.37879 * 119.99892 * 94.99941 * 4 2 1 7 7 N 1.31507 * 120.00472 * 184.91375 * 6 4 2 8 8 Si 1.86802 * 119.99928 * 4.92161 * 6 4 2 9 9 H 1.48497 * 109.47562 * 84.82991 * 8 6 4 10 10 H 1.48500 * 109.47279 * 204.83092 * 8 6 4 11 11 H 1.48498 * 109.47101 * 324.82856 * 8 6 4 12 12 N 1.46494 * 109.46982 * 119.99453 * 2 1 3 13 13 C 1.34783 * 120.00384 * 275.27567 * 12 2 1 14 14 O 1.21622 * 119.99655 * 359.72399 * 13 12 2 15 15 C 1.47285 * 119.99861 * 179.72911 * 13 12 2 16 16 C 1.39929 * 120.13683 * 359.71997 * 15 13 12 17 17 C 1.37895 * 119.98007 * 179.79210 * 16 15 13 18 18 C 1.39735 * 120.11052 * 0.49307 * 17 16 15 19 19 C 1.38597 * 120.14744 * 359.73461 * 18 17 16 20 20 C 1.38461 * 120.18012 * 0.02813 * 19 18 17 21 21 O 1.35722 * 120.07728 * 179.97438 * 20 19 18 22 22 O 1.36369 * 108.56249 * 179.73572 * 18 17 16 23 23 C 1.43955 * 105.55820 * 17.36772 * 22 18 17 24 24 O 1.36638 * 131.35292 * 180.17811 * 17 16 15 25 25 H 1.09010 * 109.47030 * 295.04043 * 1 2 3 26 26 H 1.09003 * 109.47583 * 55.03755 * 1 2 3 27 27 H 1.08995 * 109.47327 * 175.04341 * 1 2 3 28 28 H 0.97002 * 120.01001 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00139 * 95.00182 * 12 2 1 30 30 H 1.08005 * 120.01024 * 359.97438 * 16 15 13 31 31 H 1.07998 * 119.91199 * 180.02562 * 19 18 17 32 32 H 0.96707 * 114.00275 * 270.01935 * 21 20 19 33 33 H 1.08998 * 110.55667 * 91.28454 * 23 22 18 34 34 H 1.08994 * 110.56011 * 214.12196 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.1354 -1.7856 -1.2289 6 6 2.3602 0.0119 -2.3580 7 7 2.7059 -0.6133 -3.4621 8 14 2.3136 1.8789 -2.3175 9 1 3.5991 2.3948 -1.7823 10 1 2.1058 2.3989 -3.6929 11 1 1.1987 2.3274 -1.4451 12 7 2.0183 -0.6905 1.1962 13 6 2.1417 -0.0194 2.3586 14 8 1.8525 1.1607 2.4131 15 6 2.6270 -0.7152 3.5626 16 6 2.9551 -2.0742 3.5044 17 6 3.4132 -2.7214 4.6326 18 6 3.5407 -2.0249 5.8372 19 6 3.2127 -0.6798 5.9016 20 6 2.7565 -0.0198 4.7731 21 8 2.4354 1.2973 4.8387 22 8 4.0028 -2.8850 6.7892 23 6 4.5461 -4.0052 6.0665 24 8 3.7971 -4.0167 4.8370 25 1 -0.3634 0.4350 0.9312 26 1 -0.3634 0.5889 -0.8422 27 1 -0.3634 -1.0238 -0.0888 28 1 2.9370 -0.1051 -4.2554 29 1 2.2490 -1.6316 1.1527 30 1 2.8523 -2.6155 2.5754 31 1 3.3131 -0.1450 6.8345 32 1 1.5114 1.4659 5.0693 33 1 5.6070 -3.8538 5.8671 34 1 4.3880 -4.9308 6.6199 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436617034.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:07:36 Heat of formation + Delta-G solvation = -134.371284 kcal Electronic energy + Delta-G solvation = -21468.575182 eV Core-core repulsion = 17946.152397 eV Total energy + Delta-G solvation = -3522.422785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.27593 -41.13393 -39.34188 -37.42995 -36.99637 -36.61471 -34.39661 -32.60389 -30.90021 -30.26588 -27.33084 -26.89650 -25.11281 -24.05100 -22.81122 -21.42034 -20.09512 -19.87075 -18.65499 -18.61228 -18.11778 -17.45673 -17.05220 -16.76877 -15.94816 -15.83749 -15.72651 -15.49174 -15.16204 -14.95491 -14.62412 -14.41497 -14.20703 -14.06938 -13.61544 -13.24634 -13.02542 -12.89120 -12.78350 -12.43760 -11.94882 -11.86488 -11.67291 -11.22780 -10.87701 -10.75975 -10.09585 -9.83220 -9.14410 -8.38559 -6.45122 -0.50300 -0.05028 1.30898 1.35594 1.45832 1.51354 1.79197 2.27133 2.28556 2.42330 2.54121 3.03737 3.20394 3.23404 3.73944 3.79249 3.87658 4.06666 4.15011 4.33824 4.46201 4.69890 4.74104 4.80766 4.81950 4.83733 4.94693 5.07058 5.13997 5.37394 5.46603 5.71348 5.90940 6.11896 6.59425 6.75775 6.84947 7.20474 7.38641 8.76344 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.024928 B = 0.004654 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.978182 B = 6014.807750 C = 6721.606308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.234 3.766 3 H 0.033 0.967 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.035 3.965 7 N -0.929 5.929 8 Si 0.926 3.074 9 H -0.276 1.276 10 H -0.277 1.277 11 H -0.253 1.253 12 N -0.700 5.700 13 C 0.549 3.451 14 O -0.570 6.570 15 C -0.167 4.167 16 C -0.052 4.052 17 C 0.008 3.992 18 C 0.078 3.922 19 C -0.135 4.135 20 C 0.181 3.819 21 O -0.482 6.482 22 O -0.310 6.310 23 C 0.203 3.797 24 O -0.318 6.318 25 H 0.040 0.960 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.271 0.729 29 H 0.402 0.598 30 H 0.152 0.848 31 H 0.172 0.828 32 H 0.413 0.587 33 H 0.108 0.892 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.558 -5.241 21.627 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.130 3.870 3 H 0.051 0.949 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.166 4.166 7 N -0.568 5.568 8 Si 0.751 3.249 9 H -0.202 1.202 10 H -0.202 1.202 11 H -0.177 1.177 12 N -0.350 5.350 13 C 0.337 3.663 14 O -0.451 6.451 15 C -0.171 4.171 16 C -0.072 4.072 17 C -0.036 4.036 18 C 0.032 3.968 19 C -0.154 4.154 20 C 0.134 3.866 21 O -0.296 6.296 22 O -0.226 6.226 23 C 0.093 3.907 24 O -0.234 6.234 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.239 0.761 30 H 0.169 0.831 31 H 0.189 0.811 32 H 0.274 0.726 33 H 0.125 0.875 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.940 -4.507 21.402 21.957 hybrid contribution -0.105 0.055 -0.481 0.496 sum 1.834 -4.452 20.921 21.468 Atomic orbital electron populations 1.22105 0.96751 1.01345 0.99720 1.18938 0.92219 0.93172 0.82637 0.94948 1.21184 1.44505 0.94827 0.96081 0.92486 1.25593 0.93650 1.02424 0.94937 1.69970 1.46536 1.37794 1.02479 0.86062 0.79754 0.81356 0.77731 1.20175 1.20211 1.17727 1.46373 1.65025 1.14399 1.09155 1.18238 0.78142 0.86445 0.83505 1.90739 1.52424 1.16364 1.85573 1.20089 1.08305 0.93667 0.95014 1.20087 0.98093 0.91868 0.97117 1.19560 1.04995 0.84169 0.94900 1.19826 0.98663 0.92005 0.86320 1.20252 1.05153 0.89748 1.00227 1.17942 0.95100 0.83762 0.89804 1.84735 1.34592 1.17920 1.92314 1.87327 1.75072 1.30156 1.30014 1.26266 0.95769 0.91176 0.77528 1.87417 1.70186 1.22505 1.43326 0.94071 0.93189 0.92389 0.91993 0.76144 0.83075 0.81060 0.72617 0.87476 0.81318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.96 9.46 71.98 0.68 -5.27 16 2 C 0.23 11.05 2.22 44.24 0.10 11.15 16 3 H 0.03 1.67 4.73 -2.39 -0.01 1.66 16 4 C -0.53 -28.49 9.05 25.60 0.23 -28.26 16 5 H 0.06 3.26 8.06 -2.91 -0.02 3.24 16 6 C 0.03 1.94 5.47 84.66 0.46 2.40 16 7 N -0.93 -55.30 13.96 21.45 0.30 -55.00 16 8 Si 0.93 44.59 26.99 68.60 1.85 46.44 16 9 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.25 -11.82 6.82 99.48 0.68 -11.15 16 12 N -0.70 -28.20 5.02 -449.51 -2.26 -30.46 16 13 C 0.55 21.32 7.72 86.62 0.67 21.99 16 14 O -0.57 -25.49 14.81 16.89 0.25 -25.24 16 15 C -0.17 -5.11 5.89 -20.01 -0.12 -5.22 16 16 C -0.05 -1.39 9.54 22.60 0.22 -1.17 16 17 C 0.01 0.20 7.13 22.55 0.16 0.36 16 18 C 0.08 1.71 7.15 22.72 0.16 1.88 16 19 C -0.13 -2.88 9.98 22.41 0.22 -2.66 16 20 C 0.18 4.84 6.71 22.80 0.15 4.99 16 21 O -0.48 -13.08 11.56 -69.44 -0.80 -13.88 16 22 O -0.31 -5.78 11.39 -74.52 -0.85 -6.63 16 23 C 0.20 2.66 8.88 113.37 1.01 3.66 16 24 O -0.32 -6.76 11.41 -77.68 -0.89 -7.64 16 25 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.40 14.35 6.61 -92.71 -0.61 13.73 16 30 H 0.15 3.76 6.39 -2.91 -0.02 3.74 16 31 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.41 7.77 9.06 -74.05 -0.67 7.09 16 33 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.17 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -71.45 297.29 1.42 -70.04 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -0.14 Total: 18.54 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 3.95 Total: 3.84 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -1.96 Total: -85.46 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -2.29 Total: -53.40 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.85 Total: 46.44 kcal Total: -71.45 1.42 -70.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436617034.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.335 kcal (2) G-P(sol) polarization free energy of solvation -71.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds