Wall clock time and date at job start Fri Apr 10 2020 17:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 O 1.42903 * 109.46726 * 239.99756 * 2 1 3 5 5 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 6 6 H 1.09000 * 109.51366 * 59.89073 * 5 2 1 7 7 C 1.53287 * 109.51396 * 179.97438 * 5 2 1 8 8 N 1.47148 * 108.38507 * 172.22569 * 7 5 2 9 9 S 1.65606 * 120.98584 * 129.48537 * 8 7 5 10 10 O 1.42096 * 104.27751 * 206.07096 * 9 8 7 11 11 O 1.42111 * 104.27388 * 333.92794 * 9 8 7 12 12 C 1.81400 * 104.45038 * 89.99757 * 9 8 7 13 13 C 1.50696 * 109.47071 * 180.02562 * 12 9 8 14 14 H 1.07997 * 120.00253 * 0.02562 * 13 12 9 15 15 C 1.37878 * 120.00007 * 179.97438 * 13 12 9 16 16 N 1.31513 * 119.99939 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00006 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47246 * 89.99190 * 17 15 13 19 19 H 1.48495 * 109.47151 * 209.99312 * 17 15 13 20 20 H 1.48505 * 109.46925 * 329.99434 * 17 15 13 21 21 C 1.47154 * 118.03827 * 309.46279 * 8 7 5 22 22 C 1.53297 * 108.38321 * 50.52994 * 21 8 7 23 23 O 1.42959 * 109.22511 * 307.70653 * 22 21 8 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 0.96696 * 114.00096 * 60.00466 * 4 2 1 28 28 H 1.09005 * 109.68177 * 291.94839 * 7 5 2 29 29 H 1.09003 * 109.68845 * 52.46259 * 7 5 2 30 30 H 1.09000 * 109.47063 * 300.00059 * 12 9 8 31 31 H 1.08997 * 109.47279 * 59.99888 * 12 9 8 32 32 H 0.97005 * 119.99595 * 180.02562 * 16 15 13 33 33 H 1.08998 * 109.68693 * 170.25879 * 21 8 7 34 34 H 1.09008 * 109.67702 * 290.81201 * 21 8 7 35 35 H 1.09002 * 109.50517 * 67.62621 * 22 21 8 36 36 H 1.08997 * 109.51348 * 187.72120 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.6755 -1.7485 1.2509 7 6 3.5729 -0.7224 1.2499 8 7 4.0361 -1.2508 2.5428 9 16 5.1608 -2.4642 2.6143 10 8 4.9049 -3.1065 3.8557 11 8 5.0054 -3.1589 1.3843 12 6 6.7556 -1.6011 2.6608 13 6 7.8718 -2.6114 2.7270 14 1 7.6446 -3.6671 2.7394 15 6 9.1832 -2.1880 2.7708 16 7 10.1573 -3.0696 2.8291 17 14 9.5763 -0.3619 2.7486 18 1 9.6243 0.1511 4.1414 19 1 10.8929 -0.1469 2.0963 20 1 8.5241 0.3618 1.9906 21 6 3.4708 -0.6688 3.7704 22 6 1.9428 -0.6701 3.6469 23 8 1.5694 -0.0442 2.4171 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.7210 -0.2702 -1.9979 28 1 3.9399 -1.3554 0.4419 29 1 3.9409 0.2947 1.1153 30 1 6.8672 -0.9953 1.7616 31 1 6.7949 -0.9575 3.5396 32 1 11.0799 -2.7717 2.8602 33 1 3.7701 -1.2661 4.6316 34 1 3.8285 0.3540 3.8902 35 1 1.5777 -1.6971 3.6584 36 1 1.5096 -0.1204 4.4825 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563435515.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:37 Heat of formation + Delta-G solvation = -164.696827 kcal Electronic energy + Delta-G solvation = -21051.450571 eV Core-core repulsion = 17663.156723 eV Total energy + Delta-G solvation = -3388.293848 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -39.63603 -37.24016 -36.35176 -35.19022 -34.65319 -33.25894 -32.23748 -29.88349 -29.79225 -27.08620 -24.38508 -23.06255 -22.13079 -20.90690 -18.40719 -17.79638 -17.67028 -16.73419 -16.08431 -15.81655 -15.63268 -15.35222 -15.07869 -14.51793 -14.17203 -14.01850 -13.90677 -13.59036 -12.73077 -12.69607 -12.51379 -12.22223 -12.01164 -11.66949 -11.62099 -11.60796 -11.31066 -11.21197 -10.98805 -10.87702 -10.48584 -10.33055 -10.25065 -10.05159 -9.91496 -9.52743 -8.85100 -8.56441 -6.33070 -4.42252 1.06588 3.13075 3.18756 3.21150 3.22417 3.30373 4.20518 4.46353 4.52781 4.64111 4.72135 4.81915 4.84795 4.94735 5.01902 5.10101 5.15787 5.35439 5.39723 5.51837 5.58079 5.61739 5.67761 5.81406 5.93117 6.02091 6.12007 6.24132 6.32764 6.77676 7.03594 7.18265 7.45283 7.98871 8.58367 9.22138 10.78001 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.025168 B = 0.005393 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.243506 B = 5190.512524 C = 5414.941824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.111 3.889 3 H 0.065 0.935 4 O -0.559 6.559 5 C 0.088 3.912 6 H 0.071 0.929 7 C 0.096 3.904 8 N -1.015 6.015 9 S 2.602 3.398 10 O -0.969 6.969 11 O -0.965 6.965 12 C -0.470 4.470 13 C -0.535 4.535 14 H 0.085 0.915 15 C 0.089 3.911 16 N -0.880 5.880 17 Si 0.884 3.116 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.263 1.263 21 C 0.081 3.919 22 C 0.056 3.944 23 O -0.376 6.376 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.383 0.617 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.272 0.728 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.627 10.655 -3.053 20.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.052 3.948 3 H 0.083 0.917 4 O -0.365 6.365 5 C 0.029 3.971 6 H 0.089 0.911 7 C -0.030 4.030 8 N -0.851 5.851 9 S 2.702 3.298 10 O -0.960 6.960 11 O -0.955 6.955 12 C -0.605 4.605 13 C -0.573 4.573 14 H 0.103 0.897 15 C -0.118 4.118 16 N -0.515 5.515 17 Si 0.710 3.290 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.188 1.188 21 C -0.044 4.044 22 C -0.022 4.022 23 O -0.295 6.295 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.231 0.769 28 H 0.130 0.870 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.482 9.459 -2.585 20.045 hybrid contribution 0.623 1.668 -0.313 1.808 sum -16.860 11.128 -2.898 20.408 Atomic orbital electron populations 1.22431 0.95726 1.02921 1.02684 1.21454 0.93317 0.95199 0.84868 0.91667 1.86506 1.76963 1.57468 1.15600 1.22121 0.93666 0.96327 0.85021 0.91056 1.21979 0.94376 1.00785 0.85864 1.58246 1.58606 1.57488 1.10759 1.05367 0.76230 0.74346 0.73860 1.93475 1.84600 1.72540 1.45384 1.93499 1.85876 1.70344 1.45831 1.28250 1.16913 1.09652 1.05677 1.20089 0.89101 0.92462 1.55683 0.89668 1.24895 0.95602 0.98336 0.92948 1.69872 0.99960 1.34264 1.47442 0.86700 0.78339 0.84918 0.79046 1.19616 1.20587 1.18789 1.22074 0.94519 1.00038 0.87816 1.22916 0.94342 0.98604 0.86345 1.87782 1.75890 1.52402 1.13427 0.92400 0.91892 0.90701 0.76913 0.87037 0.91171 0.89782 0.90271 0.91835 0.87664 0.90873 0.92440 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 9.39 37.16 0.35 -1.19 16 2 C 0.11 1.16 3.37 -26.73 -0.09 1.07 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 O -0.56 -5.98 12.81 -35.23 -0.45 -6.43 16 5 C 0.09 1.16 2.57 -26.58 -0.07 1.09 16 6 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 7 C 0.10 1.43 5.70 -3.54 -0.02 1.41 16 8 N -1.01 -16.74 3.27 -113.06 -0.37 -17.11 16 9 S 2.60 55.19 5.39 -107.50 -0.58 54.61 16 10 O -0.97 -22.43 16.62 -57.54 -0.96 -23.38 16 11 O -0.96 -22.96 16.62 -57.54 -0.96 -23.91 16 12 C -0.47 -10.76 5.00 36.00 0.18 -10.58 16 13 C -0.53 -15.14 9.68 -34.44 -0.33 -15.47 16 14 H 0.09 2.60 7.96 -52.49 -0.42 2.19 16 15 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 16 N -0.88 -26.30 13.96 55.43 0.77 -25.52 16 17 Si 0.88 20.63 27.47 -169.99 -4.67 15.96 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 21 C 0.08 1.09 6.67 -3.53 -0.02 1.07 16 22 C 0.06 0.64 6.98 37.31 0.26 0.90 16 23 O -0.38 -4.68 9.72 -35.23 -0.34 -5.02 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.66 7.69 -51.93 -0.40 0.26 16 27 H 0.38 2.22 9.08 45.56 0.41 2.63 16 28 H 0.11 1.84 6.68 -51.93 -0.35 1.49 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.81 7.20 -51.92 -0.37 1.43 16 31 H 0.08 1.65 7.57 -51.93 -0.39 1.26 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.11 1.43 6.88 -51.93 -0.36 1.07 16 34 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 307.96 15.07 4.64 4.64 Total: -1.00 -35.43 307.96 -7.18 -42.60 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.42 Total: 2.85 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 0.16 Total: -19.28 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.40 Total: -42.64 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -2.71 Total: -58.75 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Atomic # 16 Polarization: 55.19 SS G_CDS: -0.58 Total: 54.61 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.43 -7.18 -42.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563435515.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.094 kcal (2) G-P(sol) polarization free energy of solvation -35.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds