Wall clock time and date at job start Fri Apr 10 2020 17:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00300 * 2 1 4 4 H 1.08999 * 110.90971 * 26.10128 * 3 2 1 5 5 C 1.55158 * 111.00405 * 150.00130 * 3 2 1 6 6 C 1.54318 * 102.94123 * 153.57852 * 5 3 2 7 7 H 1.09000 * 109.88485 * 97.37602 * 6 5 3 8 8 C 1.52999 * 109.88034 * 218.38737 * 6 5 3 9 9 O 1.42903 * 109.47256 * 53.28645 * 8 6 5 10 10 N 1.47023 * 107.40173 * 337.88373 * 6 5 3 11 11 S 1.65606 * 125.64662 * 178.82317 * 10 6 5 12 12 O 1.42102 * 104.27332 * 206.06849 * 11 10 6 13 13 O 1.42097 * 104.27750 * 333.92584 * 11 10 6 14 14 C 1.81395 * 104.44946 * 89.99800 * 11 10 6 15 15 C 1.50699 * 109.47142 * 179.97438 * 14 11 10 16 16 H 1.08004 * 119.99783 * 359.97438 * 15 14 11 17 17 C 1.37878 * 120.00435 * 180.02562 * 15 14 11 18 18 N 1.31517 * 119.99678 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00226 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46996 * 60.00035 * 19 17 15 21 21 H 1.48498 * 109.46958 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47223 * 299.99996 * 19 17 15 23 23 C 1.47746 * 108.53040 * 358.81705 * 10 6 5 24 24 H 1.08998 * 109.46954 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46931 * 300.00037 * 1 2 3 26 26 H 1.08997 * 109.46763 * 59.99438 * 1 2 3 27 27 H 1.08998 * 110.71622 * 35.21072 * 5 3 2 28 28 H 1.09004 * 110.87051 * 272.01094 * 5 3 2 29 29 H 1.08997 * 109.47286 * 293.28205 * 8 6 5 30 30 H 1.09008 * 109.47201 * 173.27986 * 8 6 5 31 31 H 0.96700 * 114.00311 * 180.02562 * 9 8 6 32 32 H 1.09000 * 109.47453 * 299.99640 * 14 11 10 33 33 H 1.09001 * 109.47412 * 59.99666 * 14 11 10 34 34 H 0.96993 * 119.99923 * 180.02562 * 18 17 15 35 35 H 1.08999 * 110.43816 * 265.37465 * 23 10 6 36 36 H 1.09000 * 110.38268 * 143.09898 * 23 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3333 2.0328 0.4480 5 6 3.3825 1.3032 0.7242 6 6 4.1234 2.4853 0.0646 7 1 4.0340 3.3740 0.6894 8 6 5.5994 2.1317 -0.1286 9 8 5.7042 0.8942 -0.8356 10 7 3.4919 2.7265 -1.2410 11 16 3.9177 3.9135 -2.3145 12 8 2.7311 4.1559 -3.0577 13 8 4.4949 4.9282 -1.5043 14 6 5.1801 3.1425 -3.3645 15 6 5.6517 4.1360 -4.3949 16 1 5.2335 5.1315 -4.4161 17 6 6.6163 3.7737 -5.3110 18 7 7.1245 2.5610 -5.2860 19 14 7.2014 5.0055 -6.5877 20 1 7.7823 6.1888 -5.9040 21 1 8.2347 4.3743 -7.4473 22 1 6.0527 5.4327 -7.4262 23 6 2.4156 1.7328 -1.4328 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 3.9119 0.3675 0.5444 28 1 3.2576 1.4747 1.7934 29 1 6.0805 2.0360 0.8447 30 1 6.0899 2.9194 -0.7005 31 1 6.6140 0.6073 -0.9937 32 1 6.0232 2.8293 -2.7487 33 1 4.7542 2.2736 -3.8663 34 1 7.8033 2.3062 -5.9303 35 1 2.7853 0.8748 -1.9943 36 1 1.5681 2.1855 -1.9475 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573266480.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:01 Heat of formation + Delta-G solvation = -163.858016 kcal Electronic energy + Delta-G solvation = -21268.544571 eV Core-core repulsion = 17880.287096 eV Total energy + Delta-G solvation = -3388.257475 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.26633 -37.19556 -36.15175 -35.42194 -34.99374 -33.32937 -30.32115 -29.71842 -28.97772 -26.45670 -24.92305 -23.51851 -21.52332 -20.83726 -18.27893 -17.48453 -17.14237 -16.65867 -16.44970 -15.63084 -15.43276 -14.95544 -14.76609 -14.35991 -14.22307 -14.02869 -13.41273 -13.04304 -12.80985 -12.43533 -12.30616 -12.00670 -11.77191 -11.50052 -11.42120 -11.19922 -11.14492 -11.13515 -10.88350 -10.80384 -10.62676 -10.49898 -9.85707 -9.76860 -9.55044 -9.35360 -8.69501 -8.41269 -6.31753 -4.42909 1.27338 3.23349 3.25529 3.30172 3.36976 3.80778 4.24264 4.35452 4.59400 4.79409 4.82398 5.00508 5.03275 5.16358 5.22480 5.23344 5.32711 5.38781 5.51660 5.59052 5.63247 5.82058 5.89537 5.98770 6.10551 6.26988 6.46108 6.59705 6.88327 6.92689 7.19413 7.44239 7.76949 7.91584 8.59083 9.24354 10.79461 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.025529 B = 0.005614 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.509126 B = 4986.356779 C = 5195.151248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.078 3.922 4 H 0.075 0.925 5 C -0.117 4.117 6 C 0.157 3.843 7 H 0.091 0.909 8 C 0.052 3.948 9 O -0.558 6.558 10 N -1.008 6.008 11 S 2.592 3.408 12 O -0.978 6.978 13 O -0.978 6.978 14 C -0.410 4.410 15 C -0.538 4.538 16 H 0.067 0.933 17 C 0.078 3.922 18 N -0.876 5.876 19 Si 0.903 3.097 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.269 1.269 23 C 0.105 3.895 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.044 0.956 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.379 0.621 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.268 0.732 35 H 0.077 0.923 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.579 -5.491 12.050 14.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.292 6.292 3 C 0.019 3.981 4 H 0.093 0.907 5 C -0.156 4.156 6 C 0.050 3.950 7 H 0.109 0.891 8 C -0.028 4.028 9 O -0.363 6.363 10 N -0.843 5.843 11 S 2.695 3.305 12 O -0.969 6.969 13 O -0.969 6.969 14 C -0.546 4.546 15 C -0.577 4.577 16 H 0.085 0.915 17 C -0.128 4.128 18 N -0.512 5.512 19 Si 0.728 3.272 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.194 1.194 23 C -0.021 4.021 24 H 0.103 0.897 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.226 0.774 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.398 -4.797 11.955 14.854 hybrid contribution 1.184 0.222 -0.887 1.496 sum -6.214 -4.575 11.067 13.492 Atomic orbital electron populations 1.22820 0.81208 1.02659 1.00104 1.87924 1.19516 1.26993 1.94815 1.23293 0.94786 0.84525 0.95518 0.90693 1.22675 0.94376 0.99903 0.98633 1.21275 0.91047 0.97726 0.84935 0.89147 1.22691 0.96545 0.87388 0.96136 1.86500 1.32372 1.38667 1.78784 1.58890 1.45585 1.49441 1.30418 1.05755 0.76794 0.73757 0.74185 1.93458 1.47027 1.84022 1.72389 1.93456 1.80230 1.55182 1.68063 1.27738 1.10345 1.07931 1.08600 1.20318 1.24677 0.97451 1.15278 0.91497 1.24905 0.95185 0.95638 0.97100 1.69953 1.27172 1.18138 1.35959 0.86465 0.78832 0.81022 0.80843 1.19461 1.20689 1.19431 1.22306 0.90146 0.92360 0.97295 0.89677 0.94142 0.93744 0.88211 0.90424 0.92565 0.92586 0.77353 0.89574 0.89632 0.92218 0.90480 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.85 101.05 1.10 1.37 16 2 O -0.37 -4.87 10.51 -35.23 -0.37 -5.24 16 3 C 0.08 1.03 3.54 -24.58 -0.09 0.95 16 4 H 0.08 0.88 7.83 -51.93 -0.41 0.47 16 5 C -0.12 -1.47 6.10 -24.90 -0.15 -1.63 16 6 C 0.16 2.34 3.14 -66.96 -0.21 2.13 16 7 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 8 C 0.05 0.75 6.48 37.16 0.24 0.99 16 9 O -0.56 -8.33 12.43 -35.23 -0.44 -8.76 16 10 N -1.01 -18.08 3.29 -104.18 -0.34 -18.42 16 11 S 2.59 57.98 5.02 -107.50 -0.54 57.44 16 12 O -0.98 -24.11 17.30 -57.54 -1.00 -25.11 16 13 O -0.98 -23.33 17.47 -57.54 -1.01 -24.33 16 14 C -0.41 -10.17 5.91 36.01 0.21 -9.96 16 15 C -0.54 -15.03 9.13 -34.44 -0.31 -15.34 16 16 H 0.07 1.84 7.71 -52.48 -0.40 1.44 16 17 C 0.08 2.16 5.46 -17.82 -0.10 2.06 16 18 N -0.88 -24.71 13.29 55.43 0.74 -23.98 16 19 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C 0.11 1.69 6.82 -2.35 -0.02 1.68 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 26 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.10 1.34 6.97 -51.93 -0.36 0.98 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.93 6.42 -51.92 -0.33 0.59 16 31 H 0.38 4.41 9.12 45.56 0.42 4.83 16 32 H 0.09 2.09 6.65 -51.92 -0.35 1.75 16 33 H 0.09 2.17 8.14 -51.92 -0.42 1.75 16 34 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.25 7.69 -51.93 -0.40 0.85 16 LS Contribution 313.41 15.07 4.72 4.72 Total: -1.00 -34.18 313.41 -6.93 -41.11 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -4.35 Total: 4.33 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 0.67 Total: -17.75 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.39 Total: -42.40 kcal Atomic # 8 Polarization: -60.64 SS G_CDS: -2.81 Total: -63.45 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 57.98 SS G_CDS: -0.54 Total: 57.44 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.18 -6.93 -41.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573266480.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.749 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds