Wall clock time and date at job start Fri Apr 10 2020 17:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00300 * 2 1 4 4 H 1.08999 * 110.90971 * 26.10128 * 3 2 1 5 5 C 1.55158 * 111.00405 * 150.00130 * 3 2 1 6 6 C 1.54318 * 102.94123 * 153.57852 * 5 3 2 7 7 H 1.09000 * 109.88485 * 97.37602 * 6 5 3 8 8 C 1.52999 * 109.88034 * 218.38737 * 6 5 3 9 9 O 1.42903 * 109.47256 * 53.28645 * 8 6 5 10 10 N 1.47023 * 107.40173 * 337.88373 * 6 5 3 11 11 S 1.65606 * 125.64662 * 178.82317 * 10 6 5 12 12 O 1.42102 * 104.27332 * 206.06849 * 11 10 6 13 13 O 1.42097 * 104.27750 * 333.92584 * 11 10 6 14 14 C 1.81395 * 104.44946 * 89.99800 * 11 10 6 15 15 C 1.50699 * 109.47142 * 179.97438 * 14 11 10 16 16 H 1.08004 * 119.99783 * 359.97438 * 15 14 11 17 17 C 1.37878 * 120.00435 * 180.02562 * 15 14 11 18 18 N 1.31517 * 119.99678 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00226 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46996 * 60.00035 * 19 17 15 21 21 H 1.48498 * 109.46958 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47223 * 299.99996 * 19 17 15 23 23 C 1.47746 * 108.53040 * 358.81705 * 10 6 5 24 24 H 1.08998 * 109.46954 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46931 * 300.00037 * 1 2 3 26 26 H 1.08997 * 109.46763 * 59.99438 * 1 2 3 27 27 H 1.08998 * 110.71622 * 35.21072 * 5 3 2 28 28 H 1.09004 * 110.87051 * 272.01094 * 5 3 2 29 29 H 1.08997 * 109.47286 * 293.28205 * 8 6 5 30 30 H 1.09008 * 109.47201 * 173.27986 * 8 6 5 31 31 H 0.96700 * 114.00311 * 180.02562 * 9 8 6 32 32 H 1.09000 * 109.47453 * 299.99640 * 14 11 10 33 33 H 1.09001 * 109.47412 * 59.99666 * 14 11 10 34 34 H 0.96993 * 119.99923 * 180.02562 * 18 17 15 35 35 H 1.08999 * 110.43816 * 265.37465 * 23 10 6 36 36 H 1.09000 * 110.38268 * 143.09898 * 23 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3333 2.0328 0.4480 5 6 3.3825 1.3032 0.7242 6 6 4.1234 2.4853 0.0646 7 1 4.0340 3.3740 0.6894 8 6 5.5994 2.1317 -0.1286 9 8 5.7042 0.8942 -0.8356 10 7 3.4919 2.7265 -1.2410 11 16 3.9177 3.9135 -2.3145 12 8 2.7311 4.1559 -3.0577 13 8 4.4949 4.9282 -1.5043 14 6 5.1801 3.1425 -3.3645 15 6 5.6517 4.1360 -4.3949 16 1 5.2335 5.1315 -4.4161 17 6 6.6163 3.7737 -5.3110 18 7 7.1245 2.5610 -5.2860 19 14 7.2014 5.0055 -6.5877 20 1 7.7823 6.1888 -5.9040 21 1 8.2347 4.3743 -7.4473 22 1 6.0527 5.4327 -7.4262 23 6 2.4156 1.7328 -1.4328 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 3.9119 0.3675 0.5444 28 1 3.2576 1.4747 1.7934 29 1 6.0805 2.0360 0.8447 30 1 6.0899 2.9194 -0.7005 31 1 6.6140 0.6073 -0.9937 32 1 6.0232 2.8293 -2.7487 33 1 4.7542 2.2736 -3.8663 34 1 7.8033 2.3062 -5.9303 35 1 2.7853 0.8748 -1.9943 36 1 1.5681 2.1855 -1.9475 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573266480.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:58 Heat of formation + Delta-G solvation = -193.161290 kcal Electronic energy + Delta-G solvation = -21269.815256 eV Core-core repulsion = 17880.287096 eV Total energy + Delta-G solvation = -3389.528160 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -40.39256 -38.32572 -37.94603 -36.92802 -36.57566 -35.41186 -31.55194 -31.09330 -30.78651 -27.27485 -26.11182 -25.56852 -22.73074 -22.03715 -19.80677 -19.14755 -18.66302 -18.09473 -17.79147 -17.31943 -17.05711 -16.24843 -16.05528 -15.81759 -15.51952 -15.22740 -14.62730 -14.55233 -14.26768 -14.08444 -13.84461 -13.48450 -13.43376 -13.10562 -13.03520 -12.84335 -12.72878 -12.55063 -12.45457 -12.39416 -11.91712 -11.82678 -11.53106 -11.25279 -10.90826 -10.77733 -10.55238 -9.88268 -8.41272 -6.60873 -0.52486 1.36516 1.39799 1.47994 1.81839 2.30229 2.79372 2.91052 2.98269 3.14966 3.39161 3.59748 3.81770 4.04822 4.07375 4.23718 4.37021 4.50117 4.54608 4.58576 4.60900 4.73419 4.80066 4.85044 4.89955 4.92720 4.95850 5.12066 5.29395 5.34156 5.48906 5.70933 6.27841 6.49049 6.90625 7.10631 8.70554 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.025529 B = 0.005614 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.509126 B = 4986.356779 C = 5195.151248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.390 6.390 3 C 0.087 3.913 4 H 0.096 0.904 5 C -0.106 4.106 6 C 0.143 3.857 7 H 0.106 0.894 8 C 0.048 3.952 9 O -0.574 6.574 10 N -1.006 6.006 11 S 2.627 3.373 12 O -1.003 7.003 13 O -0.993 6.993 14 C -0.420 4.420 15 C -0.573 4.573 16 H 0.062 0.938 17 C 0.029 3.971 18 N -0.904 5.904 19 Si 0.962 3.038 20 H -0.261 1.261 21 H -0.268 1.268 22 H -0.264 1.264 23 C 0.095 3.905 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.091 0.909 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.028 0.972 31 H 0.391 0.609 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.274 0.726 35 H 0.064 0.936 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.012 -5.538 13.460 16.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.308 6.308 3 C 0.027 3.973 4 H 0.114 0.886 5 C -0.144 4.144 6 C 0.037 3.963 7 H 0.123 0.877 8 C -0.031 4.031 9 O -0.381 6.381 10 N -0.844 5.844 11 S 2.728 3.272 12 O -0.994 6.994 13 O -0.983 6.983 14 C -0.554 4.554 15 C -0.611 4.611 16 H 0.080 0.920 17 C -0.175 4.175 18 N -0.540 5.540 19 Si 0.784 3.216 20 H -0.185 1.185 21 H -0.192 1.192 22 H -0.189 1.189 23 C -0.030 4.030 24 H 0.119 0.881 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.109 0.891 28 H 0.132 0.868 29 H 0.113 0.887 30 H 0.046 0.954 31 H 0.240 0.760 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.811 -4.855 13.355 16.215 hybrid contribution 1.270 0.139 -1.264 1.798 sum -6.540 -4.717 12.090 14.533 Atomic orbital electron populations 1.23058 0.79460 1.04082 1.00969 1.87910 1.21492 1.26716 1.94719 1.23235 0.95709 0.85276 0.93100 0.88570 1.22660 0.93278 0.98183 1.00321 1.21722 0.91458 0.99600 0.83488 0.87664 1.22772 0.96484 0.86341 0.97497 1.86467 1.33697 1.38773 1.79180 1.58481 1.46159 1.49081 1.30714 1.04357 0.75382 0.73729 0.73720 1.93416 1.47486 1.84824 1.73675 1.93424 1.80521 1.56323 1.68076 1.27780 1.11666 1.07049 1.08918 1.20733 1.25571 0.98030 1.16805 0.92003 1.25808 0.95089 0.97561 0.99001 1.70033 1.27519 1.19627 1.36787 0.85548 0.78742 0.78930 0.78407 1.18543 1.19194 1.18896 1.22516 0.89303 0.91358 0.99870 0.88110 0.92253 0.93873 0.89091 0.86772 0.88661 0.95378 0.75994 0.89791 0.91318 0.91715 0.91748 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.85 113.37 1.23 1.57 16 2 O -0.39 -9.29 10.51 -148.98 -1.57 -10.85 16 3 C 0.09 2.08 3.54 31.99 0.11 2.20 16 4 H 0.10 1.93 7.83 -2.39 -0.02 1.91 16 5 C -0.11 -2.35 6.10 31.78 0.19 -2.16 16 6 C 0.14 4.01 3.14 45.34 0.14 4.15 16 7 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 8 C 0.05 1.34 6.48 71.98 0.47 1.81 16 9 O -0.57 -16.93 12.43 -148.98 -1.85 -18.78 16 10 N -1.01 -35.73 3.29 -483.52 -1.59 -37.32 16 11 S 2.63 119.35 5.02 -56.49 -0.28 119.07 16 12 O -1.00 -50.25 17.30 -127.65 -2.21 -52.46 16 13 O -0.99 -47.49 17.47 -127.65 -2.23 -49.72 16 14 C -0.42 -21.60 5.91 71.24 0.42 -21.18 16 15 C -0.57 -32.83 9.13 25.60 0.23 -32.59 16 16 H 0.06 3.49 7.71 -2.91 -0.02 3.47 16 17 C 0.03 1.63 5.46 84.65 0.46 2.09 16 18 N -0.90 -51.74 13.29 21.45 0.28 -51.45 16 19 Si 0.96 42.96 29.54 68.60 2.03 44.99 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 22 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 23 C 0.10 3.03 6.82 86.79 0.59 3.62 16 24 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 0.77 8.12 -2.39 -0.02 0.75 16 26 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.09 2.23 6.97 -2.39 -0.02 2.22 16 28 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.03 0.94 6.42 -2.38 -0.02 0.92 16 31 H 0.39 9.07 9.12 -74.06 -0.68 8.40 16 32 H 0.08 4.26 6.65 -2.39 -0.02 4.25 16 33 H 0.07 3.68 8.14 -2.39 -0.02 3.66 16 34 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.07 2.38 7.69 -2.39 -0.02 2.36 16 Total: -1.00 -73.61 313.41 -3.15 -76.76 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.41 Total: 20.27 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 3.85 Total: -40.50 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -1.30 Total: -88.77 kcal Atomic # 8 Polarization: -123.96 SS G_CDS: -7.86 Total: -131.81 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 119.35 SS G_CDS: -0.28 Total: 119.07 kcal Total: -73.61 -3.15 -76.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573266480.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.403 kcal (2) G-P(sol) polarization free energy of solvation -73.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds