Wall clock time and date at job start Fri Apr 10 2020 17:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99858 * 2 1 4 4 C 1.53002 * 109.46866 * 180.02562 * 3 2 1 5 5 S 1.81398 * 109.46904 * 179.97438 * 4 3 2 6 6 O 1.42104 * 110.54559 * 68.37364 * 5 4 3 7 7 O 1.42097 * 110.54335 * 291.62472 * 5 4 3 8 8 N 1.65598 * 104.45183 * 179.97438 * 5 4 3 9 9 C 1.47471 * 125.62816 * 270.00176 * 8 5 4 10 10 C 1.54906 * 104.81210 * 204.06537 * 9 8 5 11 11 C 1.55156 * 101.61451 * 323.04512 * 10 9 8 12 12 O 1.42903 * 110.71799 * 276.93612 * 11 10 9 13 13 C 1.50704 * 110.71965 * 153.84937 * 11 10 9 14 14 H 1.08008 * 119.99595 * 241.45457 * 13 11 10 15 15 C 1.37875 * 120.00240 * 61.44641 * 13 11 10 16 16 N 1.31515 * 119.99829 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99702 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47603 * 60.00316 * 17 15 13 19 19 H 1.48505 * 109.46968 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47345 * 299.99927 * 17 15 13 21 21 C 1.47017 * 125.65214 * 89.99629 * 8 5 4 22 22 H 1.09002 * 109.46781 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46948 * 300.00040 * 1 2 3 24 24 H 1.08993 * 109.46973 * 60.00071 * 1 2 3 25 25 H 1.08997 * 109.47044 * 59.99824 * 3 2 1 26 26 H 1.08998 * 109.46730 * 299.99683 * 3 2 1 27 27 H 1.08998 * 109.47160 * 60.00324 * 4 3 2 28 28 H 1.08998 * 109.47049 * 299.99318 * 4 3 2 29 29 H 1.09008 * 110.34870 * 85.24666 * 9 8 5 30 30 H 1.09001 * 110.40581 * 322.91702 * 9 8 5 31 31 H 1.09002 * 111.00655 * 204.94912 * 10 9 8 32 32 H 1.09002 * 111.00329 * 81.13838 * 10 9 8 33 33 H 0.96698 * 114.00549 * 298.55211 * 12 11 10 34 34 H 0.97005 * 119.99288 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.88206 * 59.55937 * 21 8 5 36 36 H 1.09007 * 109.88177 * 298.39809 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 16 4.2733 2.8418 -0.0014 6 8 4.0287 3.4972 1.2355 7 8 4.0276 3.4965 -1.2384 8 7 5.9063 2.5672 -0.0013 9 6 6.7535 2.4252 1.1974 10 6 8.1784 2.8046 0.7225 11 6 8.1997 2.2077 -0.7095 12 8 8.5215 0.8159 -0.6723 13 6 9.1734 2.9548 -1.5841 14 1 8.8215 3.4716 -2.4648 15 6 10.5133 2.9786 -1.2600 16 7 10.9417 2.3489 -0.1878 17 14 11.7200 3.9052 -2.3438 18 1 11.3381 5.3393 -2.3962 19 1 13.0888 3.7771 -1.7823 20 1 11.6926 3.3353 -3.7148 21 6 6.7513 2.4244 -1.1959 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.6886 1.8464 0.8899 26 1 1.6886 1.8463 -0.8900 27 1 3.8568 0.6440 -0.8909 28 1 3.8575 0.6437 0.8892 29 1 6.7345 1.3957 1.5552 30 1 6.4208 3.1061 1.9808 31 1 8.9369 2.3385 1.3514 32 1 8.3063 3.8868 0.6967 33 1 9.3938 0.6235 -0.3021 34 1 11.8845 2.3653 0.0399 35 1 6.6948 3.3298 -1.8003 36 1 6.4241 1.5648 -1.7809 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592072151.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:22 Heat of formation + Delta-G solvation = -186.893921 kcal Electronic energy + Delta-G solvation = -20735.788493 eV Core-core repulsion = 17346.532106 eV Total energy + Delta-G solvation = -3389.256386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.75643 -39.01323 -38.29814 -37.14646 -36.04950 -34.14502 -33.00607 -30.85040 -29.98551 -27.48529 -26.70408 -24.52392 -23.10103 -21.59235 -19.96749 -19.25440 -18.65529 -17.95177 -17.55471 -16.97157 -16.85822 -16.76828 -16.19905 -15.88707 -15.86026 -14.95974 -14.73747 -14.50282 -13.91151 -13.69053 -13.40983 -13.33960 -13.25905 -13.22485 -13.10604 -12.78771 -12.75376 -12.60300 -12.47264 -12.27958 -12.14629 -12.00864 -11.86705 -11.14740 -10.79515 -10.58642 -10.07635 -9.90341 -8.20149 -6.33927 -0.92885 1.45292 1.46398 1.51834 1.55178 2.41616 2.53111 2.97810 2.98871 3.07651 3.51779 3.65938 3.77084 4.08390 4.08901 4.27613 4.38768 4.45885 4.48365 4.53895 4.63782 4.67004 4.73070 4.83053 4.99957 5.20942 5.27160 5.35678 5.57680 5.59539 5.82430 6.02031 6.14683 6.69795 7.36263 7.45659 8.85270 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.036321 B = 0.004362 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.729238 B = 6418.102210 C = 6499.024784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.404 6.404 3 C 0.064 3.936 4 C -0.620 4.620 5 S 2.646 3.354 6 O -0.975 6.975 7 O -0.980 6.980 8 N -1.010 6.010 9 C 0.117 3.883 10 C -0.125 4.125 11 C 0.234 3.766 12 O -0.588 6.588 13 C -0.564 4.564 14 H 0.055 0.945 15 C 0.035 3.965 16 N -0.906 5.906 17 Si 0.957 3.043 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.275 1.275 21 C 0.139 3.861 22 H 0.103 0.897 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.149 0.851 28 H 0.155 0.845 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.378 0.622 34 H 0.270 0.730 35 H 0.067 0.933 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.996 -3.643 2.856 15.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.323 6.323 3 C -0.014 4.014 4 C -0.751 4.751 5 S 2.742 3.258 6 O -0.965 6.965 7 O -0.971 6.971 8 N -0.849 5.849 9 C -0.008 4.008 10 C -0.165 4.165 11 C 0.194 3.806 12 O -0.397 6.397 13 C -0.603 4.603 14 H 0.074 0.926 15 C -0.166 4.166 16 N -0.546 5.546 17 Si 0.782 3.218 18 H -0.201 1.201 19 H -0.206 1.206 20 H -0.200 1.200 21 C 0.014 3.986 22 H 0.122 0.878 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.167 0.833 28 H 0.173 0.827 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.228 0.772 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.845 -3.036 2.698 16.357 hybrid contribution 1.427 0.044 -0.331 1.465 sum -14.418 -2.992 2.368 14.914 Atomic orbital electron populations 1.23099 0.78810 1.04557 1.01549 1.87903 1.22039 1.26668 1.95693 1.22223 0.89278 0.86966 1.02947 1.30682 1.05573 1.24555 1.14284 1.03787 0.71812 0.77170 0.73033 1.93541 1.84344 1.72725 1.45936 1.93547 1.84394 1.72894 1.46262 1.58404 1.23545 1.88852 1.14062 1.22199 0.90681 1.01545 0.86367 1.23084 0.94383 1.00063 0.98996 1.19619 0.89628 0.79573 0.91830 1.86081 1.40206 1.26341 1.87061 1.21818 0.93560 1.33592 1.11294 0.92632 1.25591 0.99544 0.95448 0.96011 1.69758 1.16301 1.43094 1.25398 0.85640 0.77918 0.79048 0.79145 1.20098 1.20579 1.20044 1.21654 0.90445 1.00445 0.86101 0.87824 0.92454 0.92623 0.90292 0.90672 0.83271 0.82675 0.90427 0.89853 0.90604 0.93161 0.77230 0.92077 0.91507 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.47 16 2 O -0.40 -8.80 10.70 -148.98 -1.59 -10.39 16 3 C 0.06 1.33 5.95 71.98 0.43 1.76 16 4 C -0.62 -14.06 6.55 71.98 0.47 -13.59 16 5 S 2.65 80.49 5.65 -56.49 -0.32 80.17 16 6 O -0.97 -33.08 17.28 -127.65 -2.21 -35.29 16 7 O -0.98 -35.33 17.60 -127.65 -2.25 -37.58 16 8 N -1.01 -35.96 3.62 -506.33 -1.83 -37.80 16 9 C 0.12 4.14 7.07 86.85 0.61 4.75 16 10 C -0.13 -5.46 5.46 31.98 0.17 -5.29 16 11 C 0.23 11.07 0.85 -10.35 -0.01 11.06 16 12 O -0.59 -28.27 13.08 -148.98 -1.95 -30.22 16 13 C -0.56 -29.46 8.21 25.60 0.21 -29.25 16 14 H 0.06 2.91 7.57 -2.91 -0.02 2.89 16 15 C 0.04 1.81 5.28 84.65 0.45 2.25 16 16 N -0.91 -46.19 10.67 21.45 0.23 -45.97 16 17 Si 0.96 41.30 29.54 68.60 2.03 43.32 16 18 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 21 C 0.14 5.76 6.25 86.73 0.54 6.30 16 22 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.15 3.22 8.14 -2.39 -0.02 3.20 16 28 H 0.16 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 30 H 0.08 2.72 7.67 -2.39 -0.02 2.70 16 31 H 0.08 3.42 7.54 -2.39 -0.02 3.40 16 32 H 0.05 2.31 8.04 -2.39 -0.02 2.29 16 33 H 0.38 18.52 7.46 -74.06 -0.55 17.96 16 34 H 0.27 13.18 8.31 -92.70 -0.77 12.41 16 35 H 0.07 2.88 7.66 -2.39 -0.02 2.86 16 36 H 0.07 2.63 8.07 -2.38 -0.02 2.61 16 Total: -1.00 -63.42 313.55 -3.24 -66.66 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.53 Total: 27.61 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 4.13 Total: -20.53 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -1.61 Total: -83.76 kcal Atomic # 8 Polarization: -105.48 SS G_CDS: -8.00 Total: -113.48 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 80.49 SS G_CDS: -0.32 Total: 80.17 kcal Total: -63.42 -3.24 -66.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592072151.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.230 kcal (2) G-P(sol) polarization free energy of solvation -63.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds