Wall clock time and date at job start Fri Apr 10 2020 17:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47081 * 2 1 4 4 C 1.53003 * 109.47012 * 179.97438 * 3 2 1 5 5 H 1.08998 * 115.55952 * 29.31804 * 4 3 2 6 6 C 1.52993 * 117.49895 * 243.62500 * 4 3 2 7 7 C 1.53003 * 117.49538 * 175.00026 * 4 3 2 8 8 H 1.08999 * 117.51848 * 0.02562 * 7 4 3 9 9 C 1.50698 * 117.49576 * 214.97898 * 7 4 3 10 10 O 1.21283 * 120.00472 * 359.97438 * 9 7 4 11 11 N 1.34777 * 119.99538 * 179.97438 * 9 7 4 12 12 C 1.46499 * 119.99665 * 179.72653 * 11 9 7 13 13 H 1.08999 * 109.47228 * 325.27715 * 12 11 9 14 14 C 1.50706 * 109.47303 * 205.27741 * 12 11 9 15 15 H 1.07998 * 119.99769 * 0.02562 * 14 12 11 16 16 C 1.37877 * 120.00286 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99896 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 119.99872 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47398 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46974 * 120.00544 * 18 16 14 21 21 H 1.48508 * 109.47010 * 240.00184 * 18 16 14 22 22 C 1.52999 * 109.47341 * 85.27876 * 12 11 9 23 23 F 1.39897 * 109.47184 * 59.99699 * 22 12 11 24 24 F 1.39898 * 109.47495 * 179.97438 * 22 12 11 25 25 F 1.39903 * 109.46951 * 299.99953 * 22 12 11 26 26 H 1.09003 * 109.47320 * 299.99786 * 1 2 3 27 27 H 1.09003 * 109.47016 * 59.99946 * 1 2 3 28 28 H 1.08992 * 109.47114 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47267 * 240.00499 * 2 1 3 30 30 H 1.09003 * 109.47016 * 120.00054 * 2 1 3 31 31 H 1.09003 * 109.46869 * 59.99938 * 3 2 1 32 32 H 1.08990 * 109.47043 * 300.00254 * 3 2 1 33 33 H 1.08996 * 117.49985 * 145.02410 * 6 4 3 34 34 H 1.09002 * 117.52096 * 359.97438 * 6 4 3 35 35 H 0.97001 * 120.00485 * 0.02562 * 11 9 7 36 36 H 0.96999 * 119.99952 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0405 0.5851 -0.4805 6 6 4.2759 2.0456 1.2167 7 6 4.2765 2.7946 -0.1175 8 1 3.6515 3.6842 -0.1953 9 6 5.5696 2.8387 -0.8901 10 8 6.0126 1.8261 -1.3895 11 7 6.2338 4.0036 -1.0262 12 6 7.4939 4.0454 -1.7722 13 1 8.0408 3.1158 -1.6140 14 6 8.3254 5.2057 -1.2891 15 1 7.9526 5.8476 -0.5046 16 6 9.5625 5.4473 -1.8480 17 7 10.0166 4.6654 -2.8030 18 14 10.5933 6.8852 -1.2487 19 1 9.8624 7.6048 -0.1748 20 1 11.8843 6.3806 -0.7157 21 1 10.8532 7.8130 -2.3788 22 6 7.1983 4.2158 -3.2636 23 9 6.4964 5.4088 -3.4666 24 9 8.4017 4.2563 -3.9759 25 9 6.4264 3.1385 -3.7121 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 5.2109 1.5849 1.5356 34 1 3.6507 2.4429 2.0163 35 1 5.8797 4.8134 -0.6265 36 1 10.8868 4.8356 -3.1964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133827336.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:34 Heat of formation + Delta-G solvation = -171.980226 kcal Electronic energy + Delta-G solvation = -22589.144806 eV Core-core repulsion = 18659.067529 eV Total energy + Delta-G solvation = -3930.077277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.34279 -45.99742 -45.60774 -39.47219 -37.04152 -34.62891 -33.83865 -32.54099 -28.73512 -27.39671 -24.63562 -23.79958 -22.02990 -21.19148 -20.41235 -19.57847 -17.56003 -16.83511 -16.67685 -16.47382 -15.82799 -15.28826 -14.96065 -14.58830 -14.52312 -13.88367 -13.30273 -13.27144 -12.90999 -12.77713 -12.51303 -12.39770 -12.29776 -12.18245 -12.03145 -11.92578 -11.80514 -11.37811 -11.21427 -11.05084 -10.91085 -10.87554 -10.79320 -10.42095 -10.11658 -9.88255 -9.64889 -9.17206 -8.73624 -8.25202 -6.24524 -4.48382 3.02306 3.17304 3.24412 3.27926 3.73749 4.03862 4.20021 4.56287 4.67575 4.86019 4.91011 4.92683 5.07003 5.10944 5.26681 5.44401 5.47422 5.64515 5.71738 5.76279 5.78670 5.86574 5.88278 5.95418 6.07438 6.16373 6.17782 6.22979 6.43482 6.94134 7.19407 7.47295 7.62476 8.35255 8.49911 8.92012 9.19723 10.67242 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.030285 B = 0.004400 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.341946 B = 6362.471792 C = 6838.513336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.121 4.121 5 H 0.117 0.883 6 C -0.150 4.150 7 C -0.185 4.185 8 H 0.119 0.881 9 C 0.534 3.466 10 O -0.538 6.538 11 N -0.708 5.708 12 C 0.244 3.756 13 H 0.084 0.916 14 C -0.551 4.551 15 H 0.078 0.922 16 C 0.064 3.936 17 N -0.840 5.840 18 Si 0.916 3.084 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.417 3.583 23 F -0.209 7.209 24 F -0.137 7.137 25 F -0.218 7.218 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.399 0.601 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.758 -3.152 6.269 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.140 4.140 5 H 0.135 0.865 6 C -0.187 4.187 7 C -0.207 4.207 8 H 0.137 0.863 9 C 0.319 3.681 10 O -0.416 6.416 11 N -0.356 5.356 12 C 0.138 3.862 13 H 0.102 0.898 14 C -0.588 4.588 15 H 0.096 0.904 16 C -0.145 4.145 17 N -0.473 5.473 18 Si 0.742 3.258 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.206 1.206 22 C 0.361 3.639 23 F -0.191 7.191 24 F -0.118 7.118 25 F -0.199 7.199 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.233 0.767 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.249 -3.914 5.724 14.076 hybrid contribution 0.385 1.324 0.013 1.379 sum -11.864 -2.589 5.737 13.431 Atomic orbital electron populations 1.21781 0.96065 1.01461 1.01692 1.21505 0.95431 0.96715 1.02361 1.21231 0.92252 0.97138 1.02030 1.22417 0.94321 0.95995 1.01243 0.86463 1.23062 1.02981 1.02413 0.90294 1.22323 0.98212 0.98336 1.01781 0.86287 1.19635 0.84577 0.83826 0.80051 1.90682 1.68366 1.34019 1.48491 1.46004 1.24697 1.10220 1.54724 1.19728 0.81846 1.02383 0.82229 0.89804 1.20924 1.01791 1.13020 1.23112 0.90393 1.25097 0.97755 0.97469 0.94154 1.70414 1.18105 1.36747 1.22026 0.86153 0.79707 0.81154 0.78779 1.19387 1.20558 1.20554 1.23133 0.74173 0.71755 0.94880 1.92984 1.80371 1.49352 1.96428 1.93403 1.41871 1.95708 1.80820 1.93071 1.77462 1.57565 1.91851 0.92885 0.92770 0.92880 0.91742 0.91865 0.91808 0.91465 0.88321 0.88181 0.76716 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.84 16 2 C -0.12 -1.14 5.89 -26.73 -0.16 -1.29 16 3 C -0.09 -0.91 5.50 -26.73 -0.15 -1.06 16 4 C -0.12 -1.58 5.25 -90.62 -0.48 -2.05 16 5 H 0.12 1.76 7.60 -51.93 -0.39 1.37 16 6 C -0.15 -1.84 9.88 -26.73 -0.26 -2.10 16 7 C -0.19 -2.70 5.91 -91.77 -0.54 -3.24 16 8 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 9 C 0.53 10.65 7.15 -10.99 -0.08 10.57 16 10 O -0.54 -12.80 14.84 5.55 0.08 -12.72 16 11 N -0.71 -14.65 4.98 -54.93 -0.27 -14.93 16 12 C 0.24 6.12 2.21 -69.08 -0.15 5.97 16 13 H 0.08 2.36 7.57 -51.93 -0.39 1.97 16 14 C -0.55 -14.14 8.46 -34.44 -0.29 -14.43 16 15 H 0.08 1.89 7.74 -52.49 -0.41 1.48 16 16 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 17 N -0.84 -23.15 9.50 55.43 0.53 -22.62 16 18 Si 0.92 20.12 29.54 -169.99 -5.02 15.10 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 22 C 0.42 10.85 2.81 37.16 0.10 10.96 16 23 F -0.21 -5.23 16.94 2.25 0.04 -5.19 16 24 F -0.14 -3.84 12.91 2.25 0.03 -3.81 16 25 F -0.22 -5.64 15.70 2.25 0.04 -5.60 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.10 0.97 8.03 -51.93 -0.42 0.55 16 35 H 0.40 7.12 8.54 -40.82 -0.35 6.78 16 36 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 314.71 15.07 4.74 4.74 Total: -1.00 -29.92 314.71 -6.45 -36.37 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -4.89 Total: 4.59 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.73 Total: 4.07 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.25 Total: -37.55 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.72 kcal Atomic # 9 Polarization: -14.71 SS G_CDS: 0.10 Total: -14.60 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.92 -6.45 -36.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133827336.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.609 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds