Wall clock time and date at job start Fri Apr 10 2020 17:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47081 * 2 1 4 4 C 1.53003 * 109.47012 * 179.97438 * 3 2 1 5 5 H 1.08998 * 115.55952 * 29.31804 * 4 3 2 6 6 C 1.52993 * 117.49895 * 243.62500 * 4 3 2 7 7 C 1.53003 * 117.49538 * 175.00026 * 4 3 2 8 8 H 1.08999 * 117.51848 * 0.02562 * 7 4 3 9 9 C 1.50698 * 117.49576 * 214.97898 * 7 4 3 10 10 O 1.21283 * 120.00472 * 359.97438 * 9 7 4 11 11 N 1.34777 * 119.99538 * 179.97438 * 9 7 4 12 12 C 1.46499 * 119.99665 * 179.72653 * 11 9 7 13 13 H 1.08999 * 109.47228 * 325.27715 * 12 11 9 14 14 C 1.50706 * 109.47303 * 205.27741 * 12 11 9 15 15 H 1.07998 * 119.99769 * 0.02562 * 14 12 11 16 16 C 1.37877 * 120.00286 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99896 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 119.99872 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47398 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46974 * 120.00544 * 18 16 14 21 21 H 1.48508 * 109.47010 * 240.00184 * 18 16 14 22 22 C 1.52999 * 109.47341 * 85.27876 * 12 11 9 23 23 F 1.39897 * 109.47184 * 59.99699 * 22 12 11 24 24 F 1.39898 * 109.47495 * 179.97438 * 22 12 11 25 25 F 1.39903 * 109.46951 * 299.99953 * 22 12 11 26 26 H 1.09003 * 109.47320 * 299.99786 * 1 2 3 27 27 H 1.09003 * 109.47016 * 59.99946 * 1 2 3 28 28 H 1.08992 * 109.47114 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47267 * 240.00499 * 2 1 3 30 30 H 1.09003 * 109.47016 * 120.00054 * 2 1 3 31 31 H 1.09003 * 109.46869 * 59.99938 * 3 2 1 32 32 H 1.08990 * 109.47043 * 300.00254 * 3 2 1 33 33 H 1.08996 * 117.49985 * 145.02410 * 6 4 3 34 34 H 1.09002 * 117.52096 * 359.97438 * 6 4 3 35 35 H 0.97001 * 120.00485 * 0.02562 * 11 9 7 36 36 H 0.96999 * 119.99952 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0405 0.5851 -0.4805 6 6 4.2759 2.0456 1.2167 7 6 4.2765 2.7946 -0.1175 8 1 3.6515 3.6842 -0.1953 9 6 5.5696 2.8387 -0.8901 10 8 6.0126 1.8261 -1.3895 11 7 6.2338 4.0036 -1.0262 12 6 7.4939 4.0454 -1.7722 13 1 8.0408 3.1158 -1.6140 14 6 8.3254 5.2057 -1.2891 15 1 7.9526 5.8476 -0.5046 16 6 9.5625 5.4473 -1.8480 17 7 10.0166 4.6654 -2.8030 18 14 10.5933 6.8852 -1.2487 19 1 9.8624 7.6048 -0.1748 20 1 11.8843 6.3806 -0.7157 21 1 10.8532 7.8130 -2.3788 22 6 7.1983 4.2158 -3.2636 23 9 6.4964 5.4088 -3.4666 24 9 8.4017 4.2563 -3.9759 25 9 6.4264 3.1385 -3.7121 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 5.2109 1.5849 1.5356 34 1 3.6507 2.4429 2.0163 35 1 5.8797 4.8134 -0.6265 36 1 10.8868 4.8356 -3.1964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133827336.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:34 Heat of formation + Delta-G solvation = -189.663930 kcal Electronic energy + Delta-G solvation = -22589.911629 eV Core-core repulsion = 18659.067529 eV Total energy + Delta-G solvation = -3930.844100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.45331 -48.08922 -47.76167 -40.95725 -38.26249 -36.44457 -34.70962 -34.43753 -30.56842 -28.27553 -26.64875 -25.26887 -23.12381 -22.67022 -21.49840 -21.11008 -19.33159 -18.89077 -18.71004 -18.27177 -17.58233 -16.88168 -16.29250 -15.94618 -15.78619 -15.30071 -15.03824 -14.92705 -14.54330 -14.48643 -14.33193 -14.18061 -14.05770 -13.92735 -13.68453 -13.13869 -13.04613 -12.91505 -12.73619 -12.67627 -12.22667 -12.17196 -11.90700 -11.64665 -11.57546 -11.14401 -10.95138 -10.72512 -10.71021 -10.07930 -8.23442 -6.54660 1.44639 1.45965 1.53812 1.59548 2.16894 2.38177 2.49571 2.87978 2.94108 3.60274 3.73854 3.79236 3.85041 3.90991 4.12902 4.22647 4.29995 4.34224 4.42431 4.67430 4.82740 4.90053 4.92527 4.97047 5.04678 5.11503 5.24055 5.39072 5.41301 5.44442 5.52900 5.55526 5.63122 6.50765 6.72555 7.14997 7.36129 8.69723 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.030285 B = 0.004400 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.341946 B = 6362.471792 C = 6838.513336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.082 4.082 4 C -0.121 4.121 5 H 0.088 0.912 6 C -0.129 4.129 7 C -0.196 4.196 8 H 0.150 0.850 9 C 0.526 3.474 10 O -0.585 6.585 11 N -0.702 5.702 12 C 0.250 3.750 13 H 0.044 0.956 14 C -0.561 4.561 15 H 0.093 0.907 16 C 0.013 3.987 17 N -0.876 5.876 18 Si 0.985 3.015 19 H -0.254 1.254 20 H -0.277 1.277 21 H -0.281 1.281 22 C 0.413 3.587 23 F -0.202 7.202 24 F -0.151 7.151 25 F -0.220 7.220 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.139 0.861 35 H 0.414 0.586 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.372 -1.722 8.245 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.119 4.119 4 C -0.140 4.140 5 H 0.106 0.894 6 C -0.166 4.166 7 C -0.216 4.216 8 H 0.167 0.833 9 C 0.315 3.685 10 O -0.466 6.466 11 N -0.352 5.352 12 C 0.142 3.858 13 H 0.062 0.938 14 C -0.597 4.597 15 H 0.111 0.889 16 C -0.192 4.192 17 N -0.510 5.510 18 Si 0.809 3.191 19 H -0.177 1.177 20 H -0.203 1.203 21 H -0.207 1.207 22 C 0.357 3.643 23 F -0.184 7.184 24 F -0.132 7.132 25 F -0.202 7.202 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.157 0.843 35 H 0.251 0.749 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.902 -2.469 7.727 16.095 hybrid contribution 0.875 0.801 -0.632 1.345 sum -13.027 -1.668 7.095 14.927 Atomic orbital electron populations 1.21757 0.94732 1.02032 1.02198 1.21506 0.96560 0.96167 1.01898 1.21232 0.89757 0.97856 1.03075 1.22466 0.96121 0.93942 1.01423 0.89375 1.23207 1.02726 1.00498 0.90160 1.22326 0.95787 1.00523 1.03002 0.83260 1.20628 0.85834 0.82611 0.79474 1.90657 1.69941 1.35515 1.50454 1.45896 1.23451 1.11500 1.54356 1.19326 0.83602 1.00590 0.82237 0.93807 1.21267 1.02050 1.13071 1.23354 0.88869 1.26047 0.98993 1.00077 0.94118 1.70544 1.18567 1.38531 1.23349 0.85080 0.77941 0.77671 0.78438 1.17719 1.20294 1.20667 1.23316 0.73778 0.71892 0.95322 1.92983 1.80120 1.48858 1.96427 1.93375 1.42808 1.95792 1.81215 1.93061 1.77440 1.57766 1.91938 0.91765 0.92845 0.92366 0.93197 0.91495 0.89428 0.91633 0.89760 0.84267 0.74883 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.31 16 2 C -0.12 -2.09 5.89 30.60 0.18 -1.91 16 3 C -0.08 -1.46 5.50 30.60 0.17 -1.29 16 4 C -0.12 -2.97 5.25 -10.79 -0.06 -3.03 16 5 H 0.09 2.71 7.60 -2.39 -0.02 2.69 16 6 C -0.13 -2.82 9.88 30.59 0.30 -2.51 16 7 C -0.20 -5.35 5.91 -11.54 -0.07 -5.41 16 8 H 0.15 3.18 8.14 -2.39 -0.02 3.16 16 9 C 0.53 21.08 7.15 87.66 0.63 21.71 16 10 O -0.59 -28.89 14.84 -3.04 -0.05 -28.94 16 11 N -0.70 -28.96 4.98 -446.09 -2.22 -31.18 16 12 C 0.25 12.79 2.21 44.25 0.10 12.89 16 13 H 0.04 2.60 7.57 -2.39 -0.02 2.58 16 14 C -0.56 -28.58 8.46 25.60 0.22 -28.36 16 15 H 0.09 4.36 7.74 -2.91 -0.02 4.34 16 16 C 0.01 0.66 5.20 84.65 0.44 1.10 16 17 N -0.88 -49.12 9.50 21.45 0.20 -48.91 16 18 Si 0.99 40.63 29.54 68.60 2.03 42.66 16 19 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 20 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 21 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 22 C 0.41 21.92 2.81 71.98 0.20 22.12 16 23 F -0.20 -10.05 16.94 44.97 0.76 -9.29 16 24 F -0.15 -8.67 12.91 44.97 0.58 -8.09 16 25 F -0.22 -11.71 15.70 44.97 0.71 -11.00 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.18 7.87 -2.39 -0.02 1.16 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.14 2.01 8.03 -2.39 -0.02 1.99 16 35 H 0.41 14.23 8.54 -92.71 -0.79 13.44 16 36 H 0.27 14.22 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -66.13 314.71 5.14 -60.99 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.31 Total: 19.78 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 2.82 Total: 13.99 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -2.02 Total: -80.09 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.05 Total: -28.94 kcal Atomic # 9 Polarization: -30.43 SS G_CDS: 2.05 Total: -28.38 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -66.13 5.14 -60.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133827336.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.679 kcal (2) G-P(sol) polarization free energy of solvation -66.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds