Wall clock time and date at job start Fri Apr 10 2020 17:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 120.00285 * 2 1 4 4 O 1.21278 * 119.99999 * 179.97438 * 3 2 1 5 5 C 1.50705 * 119.99625 * 0.02562 * 3 2 1 6 6 C 1.50704 * 109.46785 * 180.02562 * 5 3 2 7 7 H 1.08005 * 119.99878 * 359.97438 * 6 5 3 8 8 C 1.37872 * 119.99603 * 179.97438 * 6 5 3 9 9 N 1.31512 * 120.00654 * 359.97438 * 8 6 5 10 10 Si 1.86809 * 119.99755 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46951 * 90.00221 * 10 8 6 12 12 H 1.48494 * 109.46920 * 210.00273 * 10 8 6 13 13 H 1.48500 * 109.47108 * 330.00342 * 10 8 6 14 14 C 1.46500 * 119.99927 * 179.97438 * 2 1 3 15 15 H 1.09000 * 109.47207 * 179.97438 * 14 2 1 16 16 C 1.53007 * 109.46821 * 60.00208 * 14 2 1 17 17 C 1.53776 * 113.61355 * 153.43379 * 16 14 2 18 18 C 1.53778 * 87.08426 * 220.02015 * 17 16 14 19 19 C 1.53780 * 87.07877 * 25.43360 * 18 17 16 20 20 C 1.52996 * 109.47511 * 300.00334 * 14 2 1 21 21 F 1.39894 * 109.47354 * 185.54587 * 20 14 2 22 22 F 1.39905 * 109.47003 * 305.54823 * 20 14 2 23 23 F 1.39901 * 109.46979 * 65.54197 * 20 14 2 24 24 H 1.09002 * 109.47336 * 270.00604 * 1 2 3 25 25 H 1.09000 * 109.46917 * 30.00047 * 1 2 3 26 26 H 1.08997 * 109.47234 * 150.00103 * 1 2 3 27 27 H 1.09008 * 109.46762 * 299.99283 * 5 3 2 28 28 H 1.08995 * 109.47290 * 60.00011 * 5 3 2 29 29 H 0.97001 * 120.00501 * 179.97438 * 9 8 6 30 30 H 1.08992 * 112.85276 * 284.74541 * 16 14 2 31 31 H 1.09001 * 113.61679 * 334.57354 * 17 16 14 32 32 H 1.09002 * 113.61071 * 105.47011 * 17 16 14 33 33 H 1.08996 * 113.61649 * 270.88506 * 18 17 16 34 34 H 1.08996 * 113.68942 * 139.99037 * 18 17 16 35 35 H 1.08997 * 113.61325 * 220.01762 * 19 18 17 36 36 H 1.09006 * 113.61505 * 89.11732 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3648 3.6178 -0.0002 7 1 3.4266 3.4203 -0.0006 8 6 1.9052 4.9176 -0.0004 9 7 0.6122 5.1580 -0.0004 10 14 3.1191 6.3375 -0.0006 11 1 3.4407 6.7135 -1.4007 12 1 2.5192 7.5017 0.6993 13 1 4.3624 5.9259 0.6994 14 6 2.1975 -1.2687 0.0006 15 1 3.2691 -1.0696 0.0000 16 6 1.8278 -2.0715 -1.2484 17 6 2.9276 -3.0459 -1.7022 18 6 2.5843 -2.6379 -3.1447 19 6 2.0686 -1.3110 -2.5631 20 6 1.8278 -2.0706 1.2501 21 9 2.6191 -3.2223 1.3161 22 9 2.0479 -1.2877 2.3885 23 9 0.4785 -2.4346 1.1882 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 0.7585 2.5303 -0.8893 28 1 0.7591 2.5299 0.8908 29 1 0.2889 6.0726 -0.0001 30 1 0.8397 -2.5266 -1.1820 31 1 3.9293 -2.7493 -1.3912 32 1 2.7056 -4.0894 -1.4790 33 1 1.8035 -3.2491 -3.5972 34 1 3.4575 -2.5231 -3.7868 35 1 1.1532 -0.9540 -3.0350 36 1 2.8355 -0.5401 -2.4875 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143197168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:38 Heat of formation + Delta-G solvation = -192.394403 kcal Electronic energy + Delta-G solvation = -23361.399679 eV Core-core repulsion = 19430.437176 eV Total energy + Delta-G solvation = -3930.962502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -51.18154 -48.67607 -48.65776 -41.22803 -39.49360 -36.48134 -35.15805 -32.26006 -30.31338 -27.71782 -26.64325 -26.22215 -25.74586 -23.09380 -20.71104 -20.53642 -19.45624 -19.31520 -18.70624 -18.61577 -17.48854 -17.22755 -16.50367 -16.39552 -15.84320 -15.64687 -15.48780 -15.14897 -15.08572 -14.84101 -14.79033 -14.48683 -14.14685 -14.09614 -13.53565 -13.41977 -13.29143 -13.18121 -12.89661 -12.81559 -12.67312 -12.59633 -12.05400 -11.72728 -11.41848 -11.34947 -11.25065 -10.63302 -10.61103 -9.85202 -8.26192 -6.33553 1.39600 1.40679 1.44009 1.53110 1.74424 1.88231 2.41814 2.65247 2.92795 3.09353 3.20696 3.56031 3.61461 3.76211 3.92422 3.94929 4.12835 4.26768 4.38757 4.59364 4.77322 4.82359 4.84837 4.88317 5.02921 5.06020 5.10354 5.22363 5.23348 5.36983 5.53558 5.71931 5.94757 6.34065 6.78439 7.23391 7.36962 8.85682 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.022567 B = 0.005357 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.429108 B = 5225.749506 C = 5677.480237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.611 5.611 3 C 0.526 3.474 4 O -0.573 6.573 5 C 0.017 3.983 6 C -0.539 4.539 7 H 0.055 0.945 8 C 0.014 3.986 9 N -0.922 5.922 10 Si 0.962 3.038 11 H -0.270 1.270 12 H -0.274 1.274 13 H -0.276 1.276 14 C 0.109 3.891 15 H 0.117 0.883 16 C -0.123 4.123 17 C -0.127 4.127 18 C -0.127 4.127 19 C -0.128 4.128 20 C 0.445 3.555 21 F -0.174 7.174 22 F -0.195 7.195 23 F -0.174 7.174 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.049 0.951 28 H 0.041 0.959 29 H 0.268 0.732 30 H 0.123 0.877 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 -18.323 -3.540 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.345 5.345 3 C 0.318 3.682 4 O -0.451 6.451 5 C -0.022 4.022 6 C -0.577 4.577 7 H 0.073 0.927 8 C -0.186 4.186 9 N -0.561 5.561 10 Si 0.787 3.213 11 H -0.195 1.195 12 H -0.199 1.199 13 H -0.201 1.201 14 C 0.003 3.997 15 H 0.135 0.865 16 C -0.142 4.142 17 C -0.165 4.165 18 C -0.164 4.164 19 C -0.165 4.165 20 C 0.390 3.610 21 F -0.155 7.155 22 F -0.176 7.176 23 F -0.155 7.155 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.120 0.880 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.141 0.859 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.521 -18.171 -3.502 18.568 hybrid contribution 0.391 0.953 0.619 1.201 sum -1.131 -17.218 -2.884 17.495 Atomic orbital electron populations 1.22093 0.76970 1.05050 1.02829 1.47903 1.08337 1.03549 1.74703 1.21666 0.87864 0.86093 0.72543 1.90512 1.16178 1.87598 1.50808 1.19055 0.96118 0.88114 0.98882 1.21372 0.93620 0.91288 1.51460 0.92705 1.25737 0.97137 1.01263 0.94414 1.70014 1.13778 1.21385 1.50947 0.85493 0.78859 0.78358 0.78621 1.19536 1.19923 1.20070 1.22305 1.00779 0.84882 0.91771 0.86492 1.23102 1.02347 0.97655 0.91123 1.22962 0.97499 0.99459 0.96588 1.22780 1.01921 0.95757 0.95958 1.22758 1.01548 0.97284 0.94953 1.21081 0.75041 0.78705 0.86207 1.93174 1.74164 1.51468 1.96703 1.93186 1.94522 1.74964 1.54954 1.93154 1.33662 1.92218 1.96472 0.92303 0.90086 0.87997 0.93334 0.94140 0.92336 0.85890 0.90412 0.89089 0.87944 0.90837 0.90591 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.96 8.62 127.77 1.10 3.06 16 2 N -0.61 -20.75 2.24 -822.58 -1.84 -22.59 16 3 C 0.53 23.86 7.67 87.66 0.67 24.53 16 4 O -0.57 -29.65 14.79 -3.02 -0.04 -29.69 16 5 C 0.02 0.89 4.01 29.10 0.12 1.01 16 6 C -0.54 -31.51 8.92 25.60 0.23 -31.28 16 7 H 0.05 3.37 6.75 -2.91 -0.02 3.35 16 8 C 0.01 0.77 5.46 84.65 0.46 1.23 16 9 N -0.92 -53.20 13.29 21.45 0.28 -52.91 16 10 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 14 C 0.11 3.15 1.96 44.99 0.09 3.24 16 15 H 0.12 3.90 6.62 -2.39 -0.02 3.88 16 16 C -0.12 -2.63 2.44 -10.27 -0.03 -2.65 16 17 C -0.13 -2.28 7.13 31.12 0.22 -2.06 16 18 C -0.13 -2.11 8.08 31.12 0.25 -1.86 16 19 C -0.13 -2.92 7.30 31.12 0.23 -2.69 16 20 C 0.45 12.24 2.72 71.98 0.20 12.43 16 21 F -0.17 -4.36 16.70 44.97 0.75 -3.61 16 22 F -0.19 -6.53 17.14 44.97 0.77 -5.76 16 23 F -0.17 -4.21 14.59 44.97 0.66 -3.56 16 24 H 0.06 1.57 8.07 -2.39 -0.02 1.55 16 25 H 0.08 2.33 6.44 -2.39 -0.02 2.32 16 26 H 0.10 2.05 6.44 -2.39 -0.02 2.04 16 27 H 0.05 2.46 7.40 -2.38 -0.02 2.44 16 28 H 0.04 2.12 8.11 -2.39 -0.02 2.10 16 29 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.12 2.15 6.83 -2.39 -0.02 2.13 16 31 H 0.08 1.55 7.91 -2.39 -0.02 1.53 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.66 8.10 -2.38 -0.02 1.64 16 Total: -1.00 -66.51 307.47 7.24 -59.27 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 1.10 Total: 6.84 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 3.54 Total: 4.95 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -1.56 Total: -75.50 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.04 Total: -29.69 kcal Atomic # 9 Polarization: -15.10 SS G_CDS: 2.18 Total: -12.92 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -66.51 7.24 -59.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.122 kcal (2) G-P(sol) polarization free energy of solvation -66.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds