Wall clock time and date at job start Fri Apr 10 2020 17:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76200 * 102.99923 * 2 1 4 4 C 1.39227 * 120.79679 * 359.71571 * 3 2 1 5 5 N 1.32277 * 119.10342 * 180.27753 * 4 3 2 6 6 C 1.32428 * 120.81900 * 0.02562 * 5 4 3 7 7 N 1.38712 * 119.12372 * 180.02562 * 6 5 4 8 8 C 1.46501 * 120.00585 * 359.97438 * 7 6 5 9 9 H 1.09004 * 109.41036 * 325.00660 * 8 7 6 10 10 C 1.52964 * 109.41328 * 84.85547 * 8 7 6 11 11 C 1.53236 * 109.39839 * 183.77681 * 10 8 7 12 12 C 1.51263 * 108.48611 * 305.27210 * 11 10 8 13 13 C 1.37880 * 120.84868 * 231.36955 * 12 11 10 14 14 N 1.31509 * 120.00231 * 180.02562 * 13 12 11 15 15 Si 1.86801 * 119.99963 * 0.02562 * 13 12 11 16 16 H 1.48509 * 109.47072 * 90.00195 * 15 13 12 17 17 H 1.48496 * 109.47217 * 209.99964 * 15 13 12 18 18 H 1.48504 * 109.47240 * 330.00692 * 15 13 12 19 19 C 1.51265 * 118.30257 * 51.38525 * 12 11 10 20 20 C 1.52952 * 109.41669 * 205.14432 * 8 7 6 21 21 N 1.32427 * 121.74964 * 0.02562 * 6 5 4 22 22 C 1.32271 * 120.82204 * 359.97438 * 21 6 5 23 23 H 1.09001 * 109.46990 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47198 * 300.00052 * 1 2 3 25 25 H 1.08996 * 109.47382 * 60.00333 * 1 2 3 26 26 H 1.07998 * 120.45021 * 0.25553 * 4 3 2 27 27 H 0.97001 * 120.00151 * 179.97438 * 7 6 5 28 28 H 1.08999 * 109.48009 * 303.69411 * 10 8 7 29 29 H 1.09001 * 109.47541 * 63.72884 * 10 8 7 30 30 H 1.09002 * 109.61479 * 185.58712 * 11 10 8 31 31 H 1.08998 * 109.83997 * 65.08442 * 11 10 8 32 32 H 0.97003 * 120.00438 * 180.02562 * 14 13 12 33 33 H 1.08998 * 109.62575 * 188.93659 * 19 12 11 34 34 H 1.09005 * 109.78177 * 68.46319 * 19 12 11 35 35 H 1.08996 * 109.48370 * 296.27160 * 20 8 7 36 36 H 1.08999 * 109.48441 * 56.30155 * 20 8 7 37 37 H 1.07999 * 120.45152 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.2054 2.6804 -0.0059 5 7 1.5409 3.9599 -0.0113 6 6 2.8131 4.3277 -0.0117 7 7 3.1251 5.6793 -0.0169 8 6 2.0537 6.6785 -0.0225 9 1 1.2151 6.3072 -0.6117 10 6 1.5917 6.9367 1.4127 11 6 0.4085 7.9103 1.3991 12 6 0.8204 9.1551 0.6448 13 6 0.6458 10.4065 1.1967 14 7 1.0094 11.4776 0.5259 15 14 -0.1071 10.5805 2.8973 16 1 0.9690 10.5521 3.9204 17 1 -0.8395 11.8693 2.9850 18 1 -1.0492 9.4582 3.1388 19 6 1.4283 8.9919 -0.7307 20 6 2.5733 7.9777 -0.6401 21 7 3.7953 3.4395 -0.0071 22 6 3.5360 2.1425 -0.0016 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.1660 2.3872 -0.0065 27 1 4.0527 5.9630 -0.0168 28 1 1.2826 5.9966 1.8697 29 1 2.4121 7.3676 1.9866 30 1 0.1400 8.1741 2.4221 31 1 -0.4454 7.4480 0.9041 32 1 0.8870 12.3580 0.9143 33 1 1.8148 9.9507 -1.0762 34 1 0.6724 8.6294 -1.4275 35 1 3.3698 8.3836 -0.0166 36 1 2.9605 7.7761 -1.6389 37 1 4.3417 1.4233 0.0025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157055406.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:43 Heat of formation + Delta-G solvation = 26.503302 kcal Electronic energy + Delta-G solvation = -19242.450484 eV Core-core repulsion = 16337.882461 eV Total energy + Delta-G solvation = -2904.568023 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.90151 -39.17342 -36.07206 -34.76684 -33.81464 -31.88560 -31.34362 -29.86684 -28.69405 -25.58791 -24.85354 -23.36842 -23.22531 -21.20776 -19.24916 -18.57861 -18.34387 -17.93594 -16.43172 -16.26857 -16.13600 -16.01674 -15.10466 -15.04545 -14.58914 -14.50645 -14.44041 -14.20790 -13.96968 -13.67022 -13.51841 -12.88232 -12.76163 -12.57662 -12.40037 -12.07924 -11.94884 -11.88572 -11.71915 -11.39055 -11.24360 -10.90004 -10.61214 -10.54763 -10.13017 -9.68588 -8.17744 -8.08794 -6.11617 0.01643 0.14612 0.58964 1.37625 1.41373 1.49448 1.49811 1.94671 2.40574 2.80746 3.10575 3.20160 3.58937 3.69350 4.02930 4.05290 4.19821 4.32779 4.36325 4.51192 4.58665 4.69662 4.88138 4.93598 4.96025 4.97391 5.06586 5.20586 5.23527 5.35722 5.56111 5.61459 5.74170 5.79894 5.81862 6.09704 6.33988 6.50271 6.94178 7.32034 7.46596 8.93177 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031382 B = 0.003806 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.010150 B = 7354.187373 C = 7827.676563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.101 6.101 3 C -0.269 4.269 4 C 0.179 3.821 5 N -0.572 5.572 6 C 0.548 3.452 7 N -0.688 5.688 8 C 0.186 3.814 9 H 0.070 0.930 10 C -0.102 4.102 11 C -0.012 4.012 12 C -0.499 4.499 13 C 0.024 3.976 14 N -0.929 5.929 15 Si 0.939 3.061 16 H -0.275 1.275 17 H -0.291 1.291 18 H -0.255 1.255 19 C 0.012 3.988 20 C -0.104 4.104 21 N -0.574 5.574 22 C 0.210 3.790 23 H 0.130 0.870 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.187 0.813 27 H 0.414 0.586 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.030 0.970 31 H 0.020 0.980 32 H 0.263 0.737 33 H 0.032 0.968 34 H 0.002 0.998 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 -22.550 -0.367 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.135 5.865 3 C -0.389 4.389 4 C 0.006 3.994 5 N -0.294 5.294 6 C 0.190 3.810 7 N -0.323 5.323 8 C 0.082 3.918 9 H 0.088 0.912 10 C -0.141 4.141 11 C -0.050 4.050 12 C -0.518 4.518 13 C -0.174 4.174 14 N -0.569 5.569 15 Si 0.765 3.235 16 H -0.200 1.200 17 H -0.218 1.218 18 H -0.180 1.180 19 C -0.026 4.026 20 C -0.142 4.142 21 N -0.297 5.297 22 C 0.037 3.963 23 H 0.148 0.852 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.204 0.796 27 H 0.252 0.748 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.020 0.980 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 1.619 -22.176 -0.375 22.238 hybrid contribution -0.955 1.155 0.742 1.673 sum 0.664 -21.021 0.367 21.034 Atomic orbital electron populations 1.23810 0.92272 1.08829 1.06430 1.85213 1.09165 0.98687 1.93388 1.23245 0.98849 1.00718 1.16050 1.23448 1.00469 0.86161 0.89323 1.67960 1.19153 1.20346 1.21990 1.19585 0.85171 0.87374 0.88878 1.44641 1.10257 0.99898 1.77529 1.20637 0.88429 0.86247 0.96494 0.91166 1.21782 0.98774 0.97589 0.95995 1.19694 0.94501 0.94378 0.96413 1.20605 1.38798 0.90580 1.01842 1.25568 0.95798 0.95332 1.00700 1.69956 1.49016 0.98457 1.39500 0.85833 0.79400 0.77188 0.81043 1.20040 1.21768 1.17982 1.19270 0.93215 0.94945 0.95200 1.21733 0.99296 0.94481 0.98694 1.67973 1.35786 1.03136 1.22787 1.23086 0.94998 0.90700 0.87496 0.85173 0.89096 0.89014 0.79622 0.74830 0.93874 0.93682 0.95154 0.96132 0.92756 0.94962 0.97996 0.93058 0.92739 0.78767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.18 113.37 1.04 -0.31 16 2 S -0.10 -1.57 22.60 -56.49 -1.28 -2.85 16 3 C -0.27 -5.86 6.14 22.75 0.14 -5.72 16 4 C 0.18 4.40 10.62 84.86 0.90 5.30 16 5 N -0.57 -18.38 9.19 -197.34 -1.81 -20.19 16 6 C 0.55 18.07 8.41 261.39 2.20 20.27 16 7 N -0.69 -23.09 5.23 -330.39 -1.73 -24.82 16 8 C 0.19 7.12 2.35 44.96 0.11 7.23 16 9 H 0.07 2.87 7.50 -2.38 -0.02 2.86 16 10 C -0.10 -4.16 5.51 30.66 0.17 -3.99 16 11 C -0.01 -0.54 5.59 30.11 0.17 -0.37 16 12 C -0.50 -26.09 5.51 -16.18 -0.09 -26.18 16 13 C 0.02 1.33 5.46 84.66 0.46 1.80 16 14 N -0.93 -54.21 12.73 21.45 0.27 -53.93 16 15 Si 0.94 43.23 27.27 68.60 1.87 45.10 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 18 H -0.26 -11.17 6.46 99.48 0.64 -10.53 16 19 C 0.01 0.58 5.97 30.10 0.18 0.76 16 20 C -0.10 -4.23 5.40 30.66 0.17 -4.07 16 21 N -0.57 -17.04 10.45 -197.33 -2.06 -19.10 16 22 C 0.21 4.95 11.09 84.87 0.94 5.90 16 23 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.09 0.79 7.80 -2.39 -0.02 0.77 16 25 H 0.09 0.78 7.78 -2.39 -0.02 0.76 16 26 H 0.19 3.36 6.05 -2.91 -0.02 3.34 16 27 H 0.41 12.67 8.72 -92.71 -0.81 11.86 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.03 1.37 4.78 -2.39 -0.01 1.36 16 31 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 33 H 0.03 1.76 7.07 -2.39 -0.02 1.75 16 34 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 35 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.20 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -62.82 312.46 1.86 -60.96 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.22 Total: 14.21 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 6.38 Total: 0.62 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -5.33 Total: -118.05 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.87 Total: 45.10 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -1.28 Total: -2.85 kcal Total: -62.82 1.86 -60.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055406.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.464 kcal (2) G-P(sol) polarization free energy of solvation -62.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds