Wall clock time and date at job start Fri Apr 10 2020 17:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.36373 * 119.91681 * 2 1 4 4 C 1.40868 * 119.83337 * 179.97438 * 3 2 1 5 5 C 1.41134 * 120.15748 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00212 * 332.11520 * 5 4 3 7 7 C 1.39879 * 119.99897 * 152.11541 * 5 4 3 8 8 N 1.30887 * 120.00423 * 159.12593 * 7 5 4 9 9 Si 1.86803 * 119.99856 * 339.12492 * 7 5 4 10 10 H 1.48495 * 109.47265 * 91.15077 * 9 7 5 11 11 H 1.48507 * 109.47047 * 211.15105 * 9 7 5 12 12 H 1.48502 * 109.47262 * 331.14628 * 9 7 5 13 13 C 1.40903 * 119.67854 * 359.97438 * 4 3 2 14 14 C 1.36333 * 119.82967 * 359.97438 * 13 4 3 15 15 C 1.39502 * 119.91883 * 179.97438 * 2 1 3 16 16 N 1.39090 * 119.83895 * 359.75034 * 15 2 1 17 17 C 1.37767 * 120.00122 * 156.51983 * 16 15 2 18 18 N 1.30409 * 120.00235 * 353.86608 * 17 16 15 19 19 S 1.76198 * 119.99940 * 173.85942 * 17 16 15 20 20 C 1.81001 * 99.99945 * 180.02562 * 19 17 16 21 21 C 1.53003 * 109.47297 * 180.02562 * 20 19 17 22 22 N 1.46892 * 109.47501 * 180.02562 * 21 20 19 23 23 H 1.09003 * 109.47823 * 270.02474 * 1 2 3 24 24 H 1.09005 * 109.47561 * 30.02910 * 1 2 3 25 25 H 1.09001 * 109.47145 * 150.02333 * 1 2 3 26 26 H 1.07999 * 120.08582 * 359.95045 * 3 2 1 27 27 H 0.96996 * 120.00427 * 180.02562 * 8 7 5 28 28 H 1.07999 * 120.08063 * 179.97438 * 13 4 3 29 29 H 1.08004 * 119.91067 * 180.02562 * 14 13 4 30 30 H 0.96999 * 120.00396 * 336.52585 * 16 15 2 31 31 H 0.97003 * 120.00161 * 180.02562 * 18 17 16 32 32 H 1.08998 * 109.47354 * 299.99623 * 20 19 17 33 33 H 1.08998 * 109.47299 * 60.00567 * 20 19 17 34 34 H 1.09002 * 109.46683 * 300.00260 * 21 20 19 35 35 H 1.08998 * 109.47457 * 59.99618 * 21 20 19 36 36 H 1.00899 * 111.00567 * 179.97438 * 22 21 20 37 37 H 1.00900 * 110.99778 * 303.95052 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1870 1.1820 0.0000 4 6 3.5957 1.1800 0.0005 5 6 4.3065 2.3992 0.0000 6 1 3.8645 3.2819 -0.4382 7 6 5.5836 2.4646 0.5670 8 7 6.4021 3.4277 0.2272 9 14 6.1208 1.1771 1.8094 10 1 6.7899 0.0557 1.1023 11 1 7.0678 1.7877 2.7768 12 1 4.9319 0.6647 2.5368 13 6 4.2916 -0.0452 0.0016 14 6 3.5981 -1.2190 0.0027 15 6 2.2027 -1.2091 0.0005 16 7 1.5022 -2.4107 0.0063 17 6 2.0988 -3.5582 -0.4683 18 7 3.2730 -3.4973 -1.0323 19 16 1.2753 -5.1082 -0.3131 20 6 2.5011 -6.1939 -1.0844 21 6 1.9895 -7.6357 -1.0650 22 7 2.9845 -8.5169 -1.6904 23 1 -0.3635 0.0004 1.0276 24 1 -0.3634 0.8897 -0.5143 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6471 2.1173 -0.0008 27 1 7.2878 3.4728 0.6201 28 1 5.3716 -0.0544 0.0016 29 1 4.1302 -2.1589 0.0039 30 1 0.5935 -2.4408 0.3445 31 1 3.6929 -4.3052 -1.3668 32 1 2.6658 -5.8812 -2.1155 33 1 3.4388 -6.1334 -0.5321 34 1 1.8244 -7.9487 -0.0340 35 1 1.0518 -7.6960 -1.6175 36 1 2.6699 -9.4756 -1.6895 37 1 3.2032 -8.2087 -2.6260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167911621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:05 Heat of formation + Delta-G solvation = 49.764765 kcal Electronic energy + Delta-G solvation = -18788.281428 eV Core-core repulsion = 15884.722097 eV Total energy + Delta-G solvation = -2903.559330 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.92546 -36.37283 -35.86298 -33.83946 -32.49437 -31.42579 -29.57749 -29.19250 -26.25898 -24.95494 -22.93556 -21.96634 -20.80801 -19.93248 -18.30049 -17.07394 -16.80203 -16.22636 -15.78271 -15.46849 -15.01621 -14.91994 -14.01636 -13.80221 -13.57239 -13.19207 -12.86186 -12.75132 -12.53989 -12.40607 -12.05647 -11.91530 -11.72863 -11.35773 -11.22759 -10.75433 -10.63795 -10.20060 -10.03830 -9.52060 -9.31749 -9.24465 -8.77228 -8.52156 -8.03724 -7.53516 -6.90811 -6.86987 -4.31802 1.03885 1.98888 2.21841 2.77709 2.90921 3.20057 3.29841 3.39110 3.85895 4.04779 4.15789 4.35545 4.50573 4.56511 4.97842 5.26333 5.39535 5.45988 5.64429 5.75033 5.79933 6.11912 6.22817 6.40970 6.54205 6.57307 6.84848 6.89336 6.99132 7.07708 7.24194 7.33111 7.61871 7.90311 7.93871 8.00669 8.20446 8.42701 8.54929 8.77248 8.88908 10.11541 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023452 B = 0.004228 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.620526 B = 6620.513694 C = 7504.767971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.075 4.075 3 C -0.197 4.197 4 C 0.087 3.913 5 C -0.445 4.445 6 H 0.089 0.911 7 C 0.085 3.915 8 N -0.808 5.808 9 Si 0.914 3.086 10 H -0.268 1.268 11 H -0.293 1.293 12 H -0.248 1.248 13 C -0.235 4.235 14 C -0.064 4.064 15 C 0.016 3.984 16 N -0.615 5.615 17 C 0.425 3.575 18 N -0.742 5.742 19 S -0.188 6.188 20 C -0.098 4.098 21 C 0.081 3.919 22 N -0.847 5.847 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.102 0.898 27 H 0.284 0.716 28 H 0.103 0.897 29 H 0.131 0.869 30 H 0.406 0.594 31 H 0.335 0.665 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.348 0.652 37 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.849 -18.054 -0.973 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.078 4.078 3 C -0.217 4.217 4 C 0.083 3.917 5 C -0.474 4.474 6 H 0.107 0.893 7 C -0.134 4.134 8 N -0.432 5.432 9 Si 0.741 3.259 10 H -0.194 1.194 11 H -0.221 1.221 12 H -0.171 1.171 13 C -0.255 4.255 14 C -0.085 4.085 15 C -0.079 4.079 16 N -0.246 5.246 17 C 0.035 3.965 18 N -0.385 5.385 19 S 0.036 5.964 20 C -0.248 4.248 21 C -0.050 4.050 22 N -0.379 5.379 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.120 0.880 27 H 0.095 0.905 28 H 0.120 0.880 29 H 0.149 0.851 30 H 0.243 0.757 31 H 0.155 0.845 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.162 0.838 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.456 -17.118 -0.140 19.093 hybrid contribution 0.228 -1.177 -0.680 1.378 sum -8.228 -18.296 -0.819 20.077 Atomic orbital electron populations 1.20652 0.93485 1.01417 1.00888 1.18893 0.93750 0.92235 1.02900 1.20400 0.93845 0.95149 1.12285 1.17747 0.91812 0.92757 0.89374 1.19414 0.98511 0.96595 1.32835 0.89328 1.26162 0.95158 0.95835 0.96232 1.69749 1.06831 1.31070 1.35565 0.86324 0.79435 0.79986 0.80128 1.19435 1.22096 1.17143 1.20793 0.98423 0.92475 1.13792 1.20758 0.92123 0.98525 0.97093 1.16934 0.91009 0.82277 1.17686 1.41367 1.16004 1.04015 1.63230 1.23836 0.91846 0.88497 0.92371 1.69421 1.09666 1.33852 1.25520 1.85917 1.30661 1.03084 1.76763 1.23560 1.00504 0.96837 1.03888 1.21369 0.92984 0.89610 1.01080 1.58638 1.46600 1.06120 1.26515 0.92390 0.92019 0.93183 0.87978 0.90535 0.87971 0.85138 0.75739 0.84523 0.89231 0.88150 0.89712 0.94172 0.83817 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 9.42 36.00 0.34 -1.36 16 2 C -0.07 -1.56 5.86 -104.83 -0.61 -2.17 16 3 C -0.20 -4.61 9.37 -39.26 -0.37 -4.98 16 4 C 0.09 2.25 5.13 -106.80 -0.55 1.71 16 5 C -0.44 -12.28 9.54 -37.87 -0.36 -12.64 16 6 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 7 C 0.09 2.28 5.37 -17.34 -0.09 2.19 16 8 N -0.81 -21.96 13.93 55.54 0.77 -21.18 16 9 Si 0.91 21.59 24.62 -169.99 -4.19 17.40 16 10 H -0.27 -6.25 6.45 56.52 0.36 -5.88 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.25 -6.00 7.09 56.52 0.40 -5.60 16 13 C -0.23 -5.96 7.30 -39.26 -0.29 -6.25 16 14 C -0.06 -1.50 8.59 -39.78 -0.34 -1.84 16 15 C 0.02 0.34 6.45 -83.61 -0.54 -0.20 16 16 N -0.62 -10.62 5.09 -10.32 -0.05 -10.67 16 17 C 0.43 6.88 7.95 -87.90 -0.70 6.18 16 18 N -0.74 -13.02 10.14 30.77 0.31 -12.71 16 19 S -0.19 -2.25 22.23 -107.50 -2.39 -4.64 16 20 C -0.10 -0.95 4.57 37.16 0.17 -0.78 16 21 C 0.08 0.62 6.79 -3.83 -0.03 0.59 16 22 N -0.85 -5.60 9.62 -10.37 -0.10 -5.70 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 25 H 0.05 0.71 6.96 -51.93 -0.36 0.35 16 26 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 27 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 28 H 0.10 2.63 4.53 -52.49 -0.24 2.39 16 29 H 0.13 2.98 5.49 -52.48 -0.29 2.69 16 30 H 0.41 5.92 7.37 -40.82 -0.30 5.62 16 31 H 0.33 4.98 6.02 -40.82 -0.25 4.74 16 32 H 0.09 0.84 7.67 -51.92 -0.40 0.44 16 33 H 0.10 1.05 7.68 -51.92 -0.40 0.65 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.35 1.65 9.08 -39.29 -0.36 1.29 16 37 H 0.34 1.93 8.99 -39.29 -0.35 1.58 16 LS Contribution 313.34 15.07 4.72 4.72 Total: -1.00 -29.73 313.34 -8.93 -38.67 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -4.65 Total: 13.67 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -3.37 Total: -19.56 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.93 Total: -50.27 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.19 Total: 17.40 kcal Atomic # 16 Polarization: -2.25 SS G_CDS: -2.39 Total: -4.64 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.73 -8.93 -38.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167911621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.430 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds