Wall clock time and date at job start Fri Apr 10 2020 17:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.36373 * 119.91681 * 2 1 4 4 C 1.40868 * 119.83337 * 179.97438 * 3 2 1 5 5 C 1.41134 * 120.15748 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00212 * 332.11520 * 5 4 3 7 7 C 1.39879 * 119.99897 * 152.11541 * 5 4 3 8 8 N 1.30887 * 120.00423 * 159.12593 * 7 5 4 9 9 Si 1.86803 * 119.99856 * 339.12492 * 7 5 4 10 10 H 1.48495 * 109.47265 * 91.15077 * 9 7 5 11 11 H 1.48507 * 109.47047 * 211.15105 * 9 7 5 12 12 H 1.48502 * 109.47262 * 331.14628 * 9 7 5 13 13 C 1.40903 * 119.67854 * 359.97438 * 4 3 2 14 14 C 1.36333 * 119.82967 * 359.97438 * 13 4 3 15 15 C 1.39502 * 119.91883 * 179.97438 * 2 1 3 16 16 N 1.39090 * 119.83895 * 359.75034 * 15 2 1 17 17 C 1.37767 * 120.00122 * 156.51983 * 16 15 2 18 18 N 1.30409 * 120.00235 * 353.86608 * 17 16 15 19 19 S 1.76198 * 119.99940 * 173.85942 * 17 16 15 20 20 C 1.81001 * 99.99945 * 180.02562 * 19 17 16 21 21 C 1.53003 * 109.47297 * 180.02562 * 20 19 17 22 22 N 1.46892 * 109.47501 * 180.02562 * 21 20 19 23 23 H 1.09003 * 109.47823 * 270.02474 * 1 2 3 24 24 H 1.09005 * 109.47561 * 30.02910 * 1 2 3 25 25 H 1.09001 * 109.47145 * 150.02333 * 1 2 3 26 26 H 1.07999 * 120.08582 * 359.95045 * 3 2 1 27 27 H 0.96996 * 120.00427 * 180.02562 * 8 7 5 28 28 H 1.07999 * 120.08063 * 179.97438 * 13 4 3 29 29 H 1.08004 * 119.91067 * 180.02562 * 14 13 4 30 30 H 0.96999 * 120.00396 * 336.52585 * 16 15 2 31 31 H 0.97003 * 120.00161 * 180.02562 * 18 17 16 32 32 H 1.08998 * 109.47354 * 299.99623 * 20 19 17 33 33 H 1.08998 * 109.47299 * 60.00567 * 20 19 17 34 34 H 1.09002 * 109.46683 * 300.00260 * 21 20 19 35 35 H 1.08998 * 109.47457 * 59.99618 * 21 20 19 36 36 H 1.00899 * 111.00567 * 179.97438 * 22 21 20 37 37 H 1.00900 * 110.99778 * 303.95052 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1870 1.1820 0.0000 4 6 3.5957 1.1800 0.0005 5 6 4.3065 2.3992 0.0000 6 1 3.8645 3.2819 -0.4382 7 6 5.5836 2.4646 0.5670 8 7 6.4021 3.4277 0.2272 9 14 6.1208 1.1771 1.8094 10 1 6.7899 0.0557 1.1023 11 1 7.0678 1.7877 2.7768 12 1 4.9319 0.6647 2.5368 13 6 4.2916 -0.0452 0.0016 14 6 3.5981 -1.2190 0.0027 15 6 2.2027 -1.2091 0.0005 16 7 1.5022 -2.4107 0.0063 17 6 2.0988 -3.5582 -0.4683 18 7 3.2730 -3.4973 -1.0323 19 16 1.2753 -5.1082 -0.3131 20 6 2.5011 -6.1939 -1.0844 21 6 1.9895 -7.6357 -1.0650 22 7 2.9845 -8.5169 -1.6904 23 1 -0.3635 0.0004 1.0276 24 1 -0.3634 0.8897 -0.5143 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6471 2.1173 -0.0008 27 1 7.2878 3.4728 0.6201 28 1 5.3716 -0.0544 0.0016 29 1 4.1302 -2.1589 0.0039 30 1 0.5935 -2.4408 0.3445 31 1 3.6929 -4.3052 -1.3668 32 1 2.6658 -5.8812 -2.1155 33 1 3.4388 -6.1334 -0.5321 34 1 1.8244 -7.9487 -0.0340 35 1 1.0518 -7.6960 -1.6175 36 1 2.6699 -9.4756 -1.6895 37 1 3.2032 -8.2087 -2.6260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167911621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:04 Heat of formation + Delta-G solvation = 29.231482 kcal Electronic energy + Delta-G solvation = -18789.171818 eV Core-core repulsion = 15884.722097 eV Total energy + Delta-G solvation = -2904.449720 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.58420 -37.94923 -36.50509 -35.60388 -34.14365 -32.95969 -31.27785 -30.02846 -27.86619 -26.71112 -23.67203 -23.55480 -22.46367 -21.61089 -19.74058 -18.79969 -18.11203 -17.17996 -17.03021 -16.65842 -16.51376 -15.84305 -15.54020 -15.29072 -14.99432 -14.56335 -14.49435 -14.26148 -13.97368 -13.66115 -13.44921 -13.29113 -12.94098 -12.73782 -12.57881 -12.40442 -12.17487 -11.98520 -11.81336 -11.40035 -11.09347 -10.44450 -9.91701 -9.74408 -9.31583 -9.07366 -8.89295 -8.58952 -6.33419 -0.02082 0.63163 0.92607 1.01530 1.23860 1.30701 1.44979 1.53781 2.13538 2.53157 2.65086 3.55788 3.57121 3.68863 3.87566 4.20463 4.22609 4.33459 4.36266 4.61426 4.65485 4.71942 4.76437 4.90776 5.05491 5.10219 5.14824 5.36738 5.52377 5.61822 5.82687 6.00557 6.07500 6.17019 6.35307 6.41957 6.49567 6.50020 6.81567 6.92477 7.29409 8.19366 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023452 B = 0.004228 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.620526 B = 6620.513694 C = 7504.767971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.077 4.077 3 C -0.206 4.206 4 C 0.063 3.937 5 C -0.483 4.483 6 H 0.057 0.943 7 C 0.051 3.949 8 N -0.850 5.850 9 Si 0.966 3.034 10 H -0.266 1.266 11 H -0.275 1.275 12 H -0.258 1.258 13 C -0.248 4.248 14 C -0.082 4.082 15 C 0.043 3.957 16 N -0.617 5.617 17 C 0.412 3.588 18 N -0.775 5.775 19 S -0.137 6.137 20 C -0.101 4.101 21 C 0.087 3.913 22 N -0.854 5.854 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.292 0.708 28 H 0.091 0.909 29 H 0.138 0.862 30 H 0.422 0.578 31 H 0.347 0.653 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.050 0.950 36 H 0.360 0.640 37 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.123 -21.649 -0.577 24.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.080 4.080 3 C -0.226 4.226 4 C 0.060 3.940 5 C -0.513 4.513 6 H 0.076 0.924 7 C -0.164 4.164 8 N -0.476 5.476 9 Si 0.791 3.209 10 H -0.192 1.192 11 H -0.202 1.202 12 H -0.182 1.182 13 C -0.268 4.268 14 C -0.103 4.103 15 C -0.054 4.054 16 N -0.250 5.250 17 C 0.022 3.978 18 N -0.418 5.418 19 S 0.088 5.912 20 C -0.251 4.251 21 C -0.045 4.045 22 N -0.388 5.388 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.126 0.874 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.155 0.845 30 H 0.261 0.739 31 H 0.168 0.832 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.175 0.825 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.756 -20.754 0.251 23.377 hybrid contribution 0.699 -0.419 -0.910 1.222 sum -10.057 -21.173 -0.659 23.449 Atomic orbital electron populations 1.20712 0.89336 1.03041 1.02916 1.19358 0.96769 0.90968 1.00906 1.20635 0.93105 0.96783 1.12074 1.17882 0.93140 0.92346 0.90629 1.19385 0.99880 0.96481 1.35562 0.92448 1.26736 0.94967 0.97437 0.97231 1.69770 1.07629 1.32895 1.37349 0.85531 0.78862 0.78113 0.78439 1.19208 1.20163 1.18230 1.20812 0.98159 0.93112 1.14675 1.20952 0.93466 0.98044 0.97806 1.17083 0.90573 0.84249 1.13453 1.41278 1.16545 1.03221 1.63971 1.24087 0.92184 0.90052 0.91491 1.69371 1.10947 1.35853 1.25632 1.85813 1.29694 0.99295 1.76369 1.23718 0.99817 0.97740 1.03836 1.21293 0.93475 0.88257 1.01467 1.58611 1.46410 1.06761 1.27016 0.89986 0.91112 0.90937 0.87421 0.89732 0.89094 0.84482 0.73858 0.83214 0.88761 0.88837 0.89687 0.93167 0.82489 0.83721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.88 9.42 71.23 0.67 -2.21 16 2 C -0.08 -3.04 5.86 -20.00 -0.12 -3.16 16 3 C -0.21 -9.69 9.37 22.48 0.21 -9.48 16 4 C 0.06 3.39 5.13 -21.27 -0.11 3.28 16 5 C -0.48 -28.29 9.54 23.38 0.22 -28.06 16 6 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 7 C 0.05 2.85 5.37 85.23 0.46 3.30 16 8 N -0.85 -48.48 13.93 21.82 0.30 -48.18 16 9 Si 0.97 45.88 24.62 68.60 1.69 47.57 16 10 H -0.27 -12.37 6.45 99.48 0.64 -11.73 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.26 -12.52 7.09 99.48 0.71 -11.81 16 13 C -0.25 -12.80 7.30 22.48 0.16 -12.64 16 14 C -0.08 -3.77 8.59 22.14 0.19 -3.58 16 15 C 0.04 1.74 6.45 38.61 0.25 1.99 16 16 N -0.62 -19.27 5.09 -186.57 -0.95 -20.22 16 17 C 0.41 12.10 7.95 179.40 1.43 13.52 16 18 N -0.77 -25.63 10.14 -56.55 -0.57 -26.20 16 19 S -0.14 -2.74 22.23 -56.49 -1.26 -4.00 16 20 C -0.10 -1.64 4.57 71.98 0.33 -1.31 16 21 C 0.09 1.03 6.79 86.31 0.59 1.61 16 22 N -0.85 -8.83 9.62 -186.73 -1.80 -10.62 16 23 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.07 1.88 8.08 -2.38 -0.02 1.86 16 25 H 0.07 1.71 6.96 -2.39 -0.02 1.69 16 26 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 27 H 0.29 15.01 8.30 -92.71 -0.77 14.24 16 28 H 0.09 4.81 4.53 -2.91 -0.01 4.80 16 29 H 0.14 6.14 5.49 -2.91 -0.02 6.12 16 30 H 0.42 10.47 7.37 -92.71 -0.68 9.79 16 31 H 0.35 9.64 6.02 -92.71 -0.56 9.08 16 32 H 0.09 1.48 7.67 -2.40 -0.02 1.46 16 33 H 0.09 1.71 7.68 -2.40 -0.02 1.69 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.36 2.37 9.08 -89.69 -0.81 1.56 16 37 H 0.35 2.97 8.99 -89.69 -0.81 2.17 16 Total: -1.00 -66.95 313.34 -0.09 -67.04 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: -1.78 Total: 31.35 kcal Atomic # 6 Polarization: -41.01 SS G_CDS: 4.28 Total: -36.73 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -3.02 Total: -105.22 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.69 Total: 47.57 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -1.26 Total: -4.00 kcal Total: -66.95 -0.09 -67.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167911621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.269 kcal (2) G-P(sol) polarization free energy of solvation -66.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds