Wall clock time and date at job start Fri Apr 10 2020 17:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46768 * 2 1 4 4 C 1.50698 * 109.47315 * 119.99948 * 2 1 3 5 5 H 1.08001 * 119.99869 * 119.99885 * 4 2 1 6 6 C 1.37870 * 120.00273 * 300.00160 * 4 2 1 7 7 N 1.31518 * 119.99887 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00196 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47137 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47055 * 120.00229 * 8 6 4 11 11 H 1.48497 * 109.47487 * 240.00061 * 8 6 4 12 12 N 1.46901 * 109.47280 * 240.00355 * 2 1 3 13 13 C 1.46895 * 111.00137 * 84.99645 * 12 2 1 14 14 H 1.09000 * 109.71241 * 325.53504 * 13 12 2 15 15 C 1.53328 * 109.68247 * 205.00227 * 13 12 2 16 16 C 1.52734 * 108.39663 * 170.44086 * 15 13 12 17 17 C 1.50632 * 110.59417 * 51.09903 * 16 15 13 18 18 C 1.38920 * 117.74721 * 162.33598 * 17 16 15 19 19 C 1.37944 * 120.57227 * 179.63569 * 18 17 16 20 20 C 1.38235 * 119.78389 * 359.93844 * 19 18 17 21 21 C 1.38056 * 119.76346 * 0.13801 * 20 19 18 22 22 Cl 1.73599 * 119.74335 * 180.02562 * 21 20 19 23 23 C 1.37644 * 122.56433 * 342.44776 * 17 16 15 24 24 C 1.50630 * 122.56604 * 0.26303 * 23 17 16 25 25 H 1.09007 * 109.46768 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47483 * 299.99236 * 1 2 3 27 27 H 1.09000 * 109.47371 * 60.00273 * 1 2 3 28 28 H 0.96999 * 120.00075 * 180.02562 * 7 6 4 29 29 H 1.00903 * 110.99594 * 321.04309 * 12 2 1 30 30 H 1.08996 * 109.68101 * 50.71456 * 15 13 12 31 31 H 1.08997 * 109.67543 * 290.16113 * 15 13 12 32 32 H 1.09001 * 109.25068 * 290.81418 * 16 15 13 33 33 H 1.08998 * 109.22045 * 171.36782 * 16 15 13 34 34 H 1.08001 * 119.71182 * 359.65677 * 18 17 16 35 35 H 1.07998 * 120.10395 * 179.91566 * 19 18 17 36 36 H 1.08007 * 120.11897 * 180.16037 * 20 19 18 37 37 H 1.08995 * 109.41313 * 222.21496 * 24 23 17 38 38 H 1.09000 * 108.99011 * 102.80883 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0078 9 1 3.1466 -2.2870 3.6037 10 1 3.1467 -0.1873 4.8164 11 1 1.1663 -1.5868 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 1 1.2645 0.9409 -2.2895 15 6 1.9771 -0.5765 -3.6511 16 6 1.8045 0.4072 -4.8066 17 6 2.8650 1.4757 -4.7558 18 6 3.0914 2.2176 -5.9083 19 6 4.0436 3.2156 -5.9245 20 6 4.7787 3.4818 -4.7845 21 6 4.5568 2.7451 -3.6383 22 17 5.4798 3.0803 -2.2068 23 6 3.6041 1.7327 -3.6234 24 6 3.4183 0.9630 -2.3420 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.7087 1.1612 3.4844 29 1 1.4496 -1.4979 -1.4100 30 1 1.1160 -1.2431 -3.6048 31 1 2.8860 -1.1599 -3.7985 32 1 0.8214 0.8731 -4.7382 33 1 1.8819 -0.1314 -5.7511 34 1 2.5168 2.0114 -6.7992 35 1 4.2144 3.7867 -6.8251 36 1 5.5238 4.2638 -4.7904 37 1 3.4441 1.6526 -1.4983 38 1 4.2288 0.2412 -2.2411 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170910288.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:21 Heat of formation + Delta-G solvation = 0.712898 kcal Electronic energy + Delta-G solvation = -19533.779387 eV Core-core repulsion = 16593.756550 eV Total energy + Delta-G solvation = -2940.022836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.05981 -37.11109 -36.30282 -34.49151 -32.39579 -31.80882 -29.89902 -28.64579 -26.59789 -25.10178 -23.44938 -22.12374 -22.03985 -20.00550 -19.12681 -16.74558 -16.16860 -15.65227 -15.58063 -14.77810 -14.67674 -14.10481 -13.69298 -13.66311 -13.09504 -12.93214 -12.80972 -12.36422 -12.09947 -11.77346 -11.69504 -11.53522 -11.22705 -11.16298 -10.94819 -10.86674 -10.59030 -10.42363 -10.33128 -10.18733 -10.06157 -9.65670 -8.92907 -8.59948 -8.51673 -8.32541 -7.22675 -5.94889 -3.97769 1.16771 1.30306 2.29625 3.33981 3.41783 3.47097 3.60847 4.46244 4.62440 4.70246 4.90560 5.07376 5.14681 5.16480 5.33256 5.37007 5.39969 5.67858 5.75748 5.78840 5.84413 5.94858 5.99342 6.17588 6.24665 6.28224 6.42293 6.49991 6.64935 6.72273 6.74414 6.85596 6.89343 7.14492 7.41910 7.77302 7.93238 8.31902 8.57905 8.65923 9.09950 9.67611 11.12243 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021209 B = 0.004938 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.854851 B = 5668.797391 C = 6579.027738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.034 0.966 4 C -0.492 4.492 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.680 5.680 13 C 0.091 3.909 14 H 0.039 0.961 15 C -0.121 4.121 16 C -0.077 4.077 17 C -0.068 4.068 18 C -0.119 4.119 19 C -0.120 4.120 20 C -0.116 4.116 21 C -0.038 4.038 22 Cl -0.065 7.065 23 C -0.052 4.052 24 C -0.074 4.074 25 H 0.027 0.973 26 H 0.088 0.912 27 H 0.004 0.996 28 H 0.258 0.742 29 H 0.327 0.673 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.072 3.417 -17.290 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.531 4.531 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.213 1.213 12 N -0.310 5.310 13 C -0.020 4.020 14 H 0.057 0.943 15 C -0.159 4.159 16 C -0.114 4.114 17 C -0.068 4.068 18 C -0.137 4.137 19 C -0.138 4.138 20 C -0.135 4.135 21 C -0.064 4.064 22 Cl -0.036 7.036 23 C -0.053 4.053 24 C -0.111 4.111 25 H 0.046 0.954 26 H 0.107 0.893 27 H 0.023 0.977 28 H 0.068 0.932 29 H 0.145 0.855 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.103 0.897 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.749 3.634 -16.832 17.863 hybrid contribution -0.579 -0.082 0.787 0.981 sum 4.170 3.552 -16.045 16.954 Atomic orbital electron populations 1.22435 1.00845 0.99109 1.00426 1.19207 0.89454 0.94451 0.86539 0.94810 1.21195 1.29978 1.12346 0.89595 0.91914 1.24944 0.95384 0.95210 0.99013 1.69896 1.37445 1.23274 1.23149 0.86485 0.78487 0.79692 0.82991 1.19742 1.21192 1.21270 1.60771 1.58201 1.08784 1.03201 1.21338 0.95569 0.94572 0.90481 0.94262 1.21776 1.02413 0.97527 0.94193 1.20472 0.96771 0.94692 0.99476 1.19622 0.97208 0.97607 0.92348 1.21217 0.98450 0.96168 0.97856 1.20923 0.96655 0.98445 0.97760 1.20934 1.00830 0.99962 0.91781 1.21042 0.97373 0.99007 0.89026 1.98380 1.72282 1.94558 1.38394 1.19747 0.94033 0.95026 0.96495 1.20589 0.99167 0.98663 0.92687 0.95387 0.89318 0.97711 0.93193 0.85541 0.91486 0.91087 0.90517 0.90700 0.85856 0.85514 0.85314 0.89741 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.92 37.16 0.33 -3.72 16 2 C 0.21 5.27 2.39 -68.87 -0.16 5.10 16 3 H 0.03 0.94 7.28 -51.93 -0.38 0.56 16 4 C -0.49 -13.62 8.84 -34.44 -0.30 -13.92 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.87 11.32 55.43 0.63 -25.25 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 N -0.68 -14.08 6.05 -100.92 -0.61 -14.69 16 13 C 0.09 1.60 2.31 -67.68 -0.16 1.44 16 14 H 0.04 0.75 7.09 -51.93 -0.37 0.38 16 15 C -0.12 -1.66 5.36 -26.70 -0.14 -1.81 16 16 C -0.08 -0.90 5.67 -28.05 -0.16 -1.06 16 17 C -0.07 -0.88 5.74 -104.62 -0.60 -1.49 16 18 C -0.12 -1.30 9.61 -39.44 -0.38 -1.68 16 19 C -0.12 -1.25 10.05 -39.69 -0.40 -1.65 16 20 C -0.12 -1.39 9.82 -39.65 -0.39 -1.78 16 21 C -0.04 -0.54 6.31 -39.36 -0.25 -0.79 16 22 Cl -0.07 -0.98 27.26 -51.86 -1.41 -2.39 16 23 C -0.05 -0.78 5.74 -104.58 -0.60 -1.38 16 24 C -0.07 -1.28 4.47 -28.05 -0.13 -1.41 16 25 H 0.03 0.64 8.13 -51.93 -0.42 0.21 16 26 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 27 H 0.00 0.09 7.44 -51.93 -0.39 -0.30 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.33 6.38 7.98 -39.29 -0.31 6.07 16 30 H 0.07 0.86 7.94 -51.93 -0.41 0.45 16 31 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 34 H 0.12 1.04 8.05 -52.49 -0.42 0.62 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.08 1.67 6.72 -51.93 -0.35 1.32 16 38 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 317.48 15.07 4.78 4.78 Total: -1.00 -28.87 317.48 -10.51 -39.39 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.45 Total: 4.23 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -3.43 Total: -22.72 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.02 Total: -39.94 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.41 Total: -2.39 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.87 -10.51 -39.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170910288.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.099 kcal (2) G-P(sol) polarization free energy of solvation -28.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds