Wall clock time and date at job start Fri Apr 10 2020 17:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46768 * 2 1 4 4 C 1.50698 * 109.47315 * 119.99948 * 2 1 3 5 5 H 1.08001 * 119.99869 * 119.99885 * 4 2 1 6 6 C 1.37870 * 120.00273 * 300.00160 * 4 2 1 7 7 N 1.31518 * 119.99887 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00196 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47137 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47055 * 120.00229 * 8 6 4 11 11 H 1.48497 * 109.47487 * 240.00061 * 8 6 4 12 12 N 1.46901 * 109.47280 * 240.00355 * 2 1 3 13 13 C 1.46895 * 111.00137 * 84.99645 * 12 2 1 14 14 H 1.09000 * 109.71241 * 325.53504 * 13 12 2 15 15 C 1.53328 * 109.68247 * 205.00227 * 13 12 2 16 16 C 1.52734 * 108.39663 * 170.44086 * 15 13 12 17 17 C 1.50632 * 110.59417 * 51.09903 * 16 15 13 18 18 C 1.38920 * 117.74721 * 162.33598 * 17 16 15 19 19 C 1.37944 * 120.57227 * 179.63569 * 18 17 16 20 20 C 1.38235 * 119.78389 * 359.93844 * 19 18 17 21 21 C 1.38056 * 119.76346 * 0.13801 * 20 19 18 22 22 Cl 1.73599 * 119.74335 * 180.02562 * 21 20 19 23 23 C 1.37644 * 122.56433 * 342.44776 * 17 16 15 24 24 C 1.50630 * 122.56604 * 0.26303 * 23 17 16 25 25 H 1.09007 * 109.46768 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47483 * 299.99236 * 1 2 3 27 27 H 1.09000 * 109.47371 * 60.00273 * 1 2 3 28 28 H 0.96999 * 120.00075 * 180.02562 * 7 6 4 29 29 H 1.00903 * 110.99594 * 321.04309 * 12 2 1 30 30 H 1.08996 * 109.68101 * 50.71456 * 15 13 12 31 31 H 1.08997 * 109.67543 * 290.16113 * 15 13 12 32 32 H 1.09001 * 109.25068 * 290.81418 * 16 15 13 33 33 H 1.08998 * 109.22045 * 171.36782 * 16 15 13 34 34 H 1.08001 * 119.71182 * 359.65677 * 18 17 16 35 35 H 1.07998 * 120.10395 * 179.91566 * 19 18 17 36 36 H 1.08007 * 120.11897 * 180.16037 * 20 19 18 37 37 H 1.08995 * 109.41313 * 222.21496 * 24 23 17 38 38 H 1.09000 * 108.99011 * 102.80883 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0078 9 1 3.1466 -2.2870 3.6037 10 1 3.1467 -0.1873 4.8164 11 1 1.1663 -1.5868 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 1 1.2645 0.9409 -2.2895 15 6 1.9771 -0.5765 -3.6511 16 6 1.8045 0.4072 -4.8066 17 6 2.8650 1.4757 -4.7558 18 6 3.0914 2.2176 -5.9083 19 6 4.0436 3.2156 -5.9245 20 6 4.7787 3.4818 -4.7845 21 6 4.5568 2.7451 -3.6383 22 17 5.4798 3.0803 -2.2068 23 6 3.6041 1.7327 -3.6234 24 6 3.4183 0.9630 -2.3420 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.7087 1.1612 3.4844 29 1 1.4496 -1.4979 -1.4100 30 1 1.1160 -1.2431 -3.6048 31 1 2.8860 -1.1599 -3.7985 32 1 0.8214 0.8731 -4.7382 33 1 1.8819 -0.1314 -5.7511 34 1 2.5168 2.0114 -6.7992 35 1 4.2144 3.7867 -6.8251 36 1 5.5238 4.2638 -4.7904 37 1 3.4441 1.6526 -1.4983 38 1 4.2288 0.2412 -2.2411 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170910288.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:21 Heat of formation + Delta-G solvation = -15.071448 kcal Electronic energy + Delta-G solvation = -19534.463847 eV Core-core repulsion = 16593.756550 eV Total energy + Delta-G solvation = -2940.707297 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.11255 -38.51955 -37.44099 -36.06613 -34.04378 -33.06834 -31.26651 -29.86655 -28.13169 -27.22853 -24.60024 -23.31059 -23.08262 -21.87173 -20.35607 -18.35751 -17.61945 -16.90350 -16.73079 -16.59502 -15.82334 -15.50101 -15.12149 -14.79431 -14.44937 -14.35762 -14.13046 -13.84603 -13.32908 -13.32204 -13.14070 -12.92598 -12.80332 -12.70566 -12.42898 -12.25291 -12.18910 -12.04442 -11.90630 -11.74136 -11.40361 -11.22261 -10.96127 -10.48681 -9.56789 -9.53824 -8.96452 -8.09284 -6.20108 0.21370 0.34121 1.23153 1.40578 1.42421 1.54781 2.43806 2.66953 3.19179 3.43694 3.63715 3.85406 4.01150 4.12720 4.18132 4.31096 4.36600 4.51792 4.60416 4.67359 4.74515 4.76428 4.86186 4.88833 4.98575 5.01634 5.05562 5.13872 5.27248 5.34608 5.35553 5.45323 5.50362 5.64985 5.70320 5.85436 5.94208 6.29415 6.67358 6.87638 6.97954 7.50123 8.96562 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021209 B = 0.004938 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.854851 B = 5668.797391 C = 6579.027738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.219 3.781 3 H -0.005 1.005 4 C -0.511 4.511 5 H 0.055 0.945 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.959 3.041 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.683 5.683 13 C 0.091 3.909 14 H 0.022 0.978 15 C -0.113 4.113 16 C -0.072 4.072 17 C -0.076 4.076 18 C -0.112 4.112 19 C -0.108 4.108 20 C -0.120 4.120 21 C -0.057 4.057 22 Cl -0.087 7.087 23 C -0.081 4.081 24 C -0.062 4.062 25 H 0.035 0.965 26 H 0.059 0.941 27 H 0.023 0.977 28 H 0.260 0.740 29 H 0.336 0.664 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.160 0.840 35 H 0.165 0.835 36 H 0.146 0.854 37 H 0.046 0.954 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 3.022 -20.115 20.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.110 3.890 3 H 0.013 0.987 4 C -0.550 4.550 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.565 5.565 8 Si 0.785 3.215 9 H -0.192 1.192 10 H -0.210 1.210 11 H -0.204 1.204 12 N -0.313 5.313 13 C -0.019 4.019 14 H 0.040 0.960 15 C -0.151 4.151 16 C -0.109 4.109 17 C -0.076 4.076 18 C -0.130 4.130 19 C -0.126 4.126 20 C -0.138 4.138 21 C -0.084 4.084 22 Cl -0.058 7.058 23 C -0.082 4.082 24 C -0.100 4.100 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.154 0.846 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.177 0.823 35 H 0.183 0.817 36 H 0.164 0.836 37 H 0.065 0.935 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.488 3.229 -19.675 20.437 hybrid contribution -0.481 0.098 1.572 1.647 sum 4.007 3.327 -18.103 18.837 Atomic orbital electron populations 1.22230 1.00019 0.99330 0.99873 1.18902 0.89907 0.92416 0.87728 0.98662 1.21491 1.30114 1.12319 0.91078 0.92721 1.25715 0.95527 0.95881 1.01897 1.70028 1.38239 1.24385 1.23802 0.85495 0.78100 0.78609 0.79342 1.19227 1.21039 1.20410 1.60616 1.57975 1.09413 1.03320 1.21387 0.94893 0.94245 0.91355 0.95995 1.21712 1.03020 0.97738 0.92594 1.20518 0.96601 0.94025 0.99792 1.19879 0.97076 0.98387 0.92299 1.21616 0.98249 0.95146 0.97996 1.21408 0.95120 0.97868 0.98209 1.21245 1.01393 0.99851 0.91352 1.21257 0.97822 1.00023 0.89288 1.98365 1.72801 1.94682 1.39933 1.19631 0.96175 0.96155 0.96220 1.20326 0.98559 0.97759 0.93339 0.94589 0.92203 0.95815 0.93118 0.84624 0.90134 0.91084 0.89811 0.87290 0.82260 0.81719 0.83595 0.93505 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.60 8.92 71.98 0.64 -6.96 16 2 C 0.22 11.37 2.39 44.17 0.11 11.48 16 3 H 0.00 -0.27 7.28 -2.38 -0.02 -0.29 16 4 C -0.51 -29.11 8.84 25.60 0.23 -28.89 16 5 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 6 C 0.01 0.43 5.30 84.65 0.45 0.88 16 7 N -0.92 -54.74 11.32 21.45 0.24 -54.49 16 8 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 N -0.68 -29.08 6.05 -473.20 -2.86 -31.94 16 13 C 0.09 3.28 2.31 44.94 0.10 3.38 16 14 H 0.02 0.86 7.09 -2.39 -0.02 0.85 16 15 C -0.11 -2.92 5.36 30.62 0.16 -2.75 16 16 C -0.07 -1.46 5.67 29.74 0.17 -1.29 16 17 C -0.08 -1.82 5.74 -19.86 -0.11 -1.93 16 18 C -0.11 -1.98 9.61 22.36 0.21 -1.77 16 19 C -0.11 -1.82 10.05 22.20 0.22 -1.60 16 20 C -0.12 -2.62 9.82 22.23 0.22 -2.40 16 21 C -0.06 -1.66 6.31 22.42 0.14 -1.52 16 22 Cl -0.09 -2.74 27.26 -2.72 -0.07 -2.81 16 23 C -0.08 -2.45 5.74 -19.84 -0.11 -2.56 16 24 C -0.06 -2.29 4.47 29.74 0.13 -2.16 16 25 H 0.04 1.65 8.13 -2.38 -0.02 1.63 16 26 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 27 H 0.02 1.02 7.44 -2.39 -0.02 1.00 16 28 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 29 H 0.34 13.10 7.98 -89.69 -0.72 12.39 16 30 H 0.08 1.87 7.94 -2.39 -0.02 1.85 16 31 H 0.07 1.85 8.10 -2.39 -0.02 1.83 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.11 1.53 8.12 -2.39 -0.02 1.51 16 34 H 0.16 1.70 8.05 -2.91 -0.02 1.67 16 35 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 36 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 37 H 0.05 2.03 6.72 -2.39 -0.02 2.01 16 38 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -65.42 317.48 2.24 -63.18 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.34 Total: 16.99 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 2.56 Total: -38.09 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -2.62 Total: -86.43 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 17 Polarization: -2.74 SS G_CDS: -0.07 Total: -2.81 kcal Total: -65.42 2.24 -63.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170910288.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.112 kcal (2) G-P(sol) polarization free energy of solvation -65.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds