Wall clock time and date at job start Fri Apr 10 2020 17:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47370 * 120.00589 * 2 1 3 5 5 H 1.07995 * 120.00183 * 120.00216 * 4 2 1 6 6 C 1.37877 * 119.99645 * 299.99378 * 4 2 1 7 7 N 1.31509 * 120.00197 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99739 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46782 * 90.00533 * 8 6 4 10 10 H 1.48497 * 109.47254 * 210.00268 * 8 6 4 11 11 H 1.48493 * 109.47526 * 330.00846 * 8 6 4 12 12 N 1.46907 * 109.46936 * 240.00125 * 2 1 3 13 13 C 1.46904 * 110.99839 * 155.05485 * 12 2 1 14 14 H 1.08995 * 109.67846 * 34.31959 * 13 12 2 15 15 C 1.53316 * 109.72123 * 154.89357 * 13 12 2 16 16 C 1.52722 * 108.40336 * 189.63474 * 15 13 12 17 17 C 1.50631 * 110.56957 * 308.89894 * 16 15 13 18 18 C 1.39026 * 117.75684 * 197.68057 * 17 16 15 19 19 Cl 1.73602 * 119.74329 * 0.26801 * 18 17 16 20 20 C 1.38053 * 120.51553 * 180.26799 * 18 17 16 21 21 C 1.38240 * 119.76241 * 0.03375 * 20 18 17 22 22 C 1.37943 * 119.78119 * 359.86761 * 21 20 18 23 23 C 1.37637 * 122.57319 * 17.75048 * 17 16 15 24 24 C 1.50640 * 122.55906 * 359.25001 * 23 17 16 25 25 H 1.08993 * 109.47289 * 65.45989 * 1 2 3 26 26 H 1.09006 * 109.47343 * 185.46224 * 1 2 3 27 27 H 1.09007 * 109.46750 * 305.45407 * 1 2 3 28 28 H 0.97003 * 120.00465 * 179.97438 * 7 6 4 29 29 H 1.00899 * 110.99338 * 31.10194 * 12 2 1 30 30 H 1.09001 * 109.70594 * 69.88655 * 15 13 12 31 31 H 1.08997 * 109.64388 * 309.34828 * 15 13 12 32 32 H 1.09003 * 109.25383 * 188.63114 * 16 15 13 33 33 H 1.09003 * 109.25139 * 69.16718 * 16 15 13 34 34 H 1.08008 * 120.11864 * 180.02562 * 20 18 17 35 35 H 1.07996 * 120.11230 * 179.84895 * 21 20 18 36 36 H 1.07992 * 119.71154 * 179.97438 * 22 21 20 37 37 H 1.08999 * 109.25084 * 138.14032 * 24 23 17 38 38 H 1.09003 * 109.25631 * 257.57083 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9430 0.8295 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.6299 -0.5461 4.4122 10 1 1.3434 -0.9496 5.1119 11 1 2.4861 -2.5664 3.7117 12 7 2.0196 -0.6925 -1.1995 13 6 3.3675 -0.2325 -1.5596 14 1 3.9303 -0.0014 -0.6552 15 6 4.0920 -1.3253 -2.3543 16 6 5.5572 -0.9213 -2.5041 17 6 5.6671 0.4834 -3.0367 18 6 6.8842 0.8756 -3.5823 19 17 8.2062 -0.2483 -3.6357 20 6 7.0497 2.1518 -4.0820 21 6 5.9975 3.0474 -4.0391 22 6 4.7887 2.6589 -3.4998 23 6 4.6187 1.3744 -2.9989 24 6 3.2685 1.0140 -2.4367 25 1 -0.3633 0.4268 -0.9348 26 1 -0.3634 -1.0230 0.0978 27 1 -0.3633 0.5961 0.8372 28 1 0.7084 1.1607 3.4845 29 1 1.3796 -0.5759 -1.9708 30 1 3.6366 -1.4265 -3.3394 31 1 4.0252 -2.2726 -1.8194 32 1 6.0503 -1.6066 -3.1936 33 1 6.0464 -0.9762 -1.5316 34 1 7.9979 2.4496 -4.5048 35 1 6.1214 4.0479 -4.4261 36 1 3.9676 3.3595 -3.4665 37 1 2.8945 1.8453 -1.8390 38 1 2.5769 0.8223 -3.2571 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171021705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:29 Heat of formation + Delta-G solvation = -0.028026 kcal Electronic energy + Delta-G solvation = -19499.474028 eV Core-core repulsion = 16559.419063 eV Total energy + Delta-G solvation = -2940.054965 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.07102 -37.14101 -36.37145 -34.49809 -32.47503 -31.69375 -29.92231 -28.72742 -26.57799 -25.12545 -23.39293 -22.12826 -21.87256 -20.22204 -19.08924 -16.68916 -16.14793 -15.73116 -15.45361 -14.80864 -14.53384 -14.10949 -13.79345 -13.59204 -13.30793 -13.03682 -12.74529 -12.63120 -12.13159 -11.77291 -11.63793 -11.40865 -11.22344 -11.06407 -10.91773 -10.83099 -10.67491 -10.39480 -10.33486 -10.13138 -9.97207 -9.63726 -9.10780 -8.60271 -8.57589 -8.38863 -7.23180 -5.96540 -3.99240 1.15234 1.29041 2.13346 3.33312 3.39897 3.44606 3.60253 4.45648 4.67067 4.70891 4.93916 5.13382 5.18757 5.25919 5.34606 5.35029 5.45825 5.66804 5.72404 5.77912 5.86275 6.04498 6.15611 6.19389 6.22759 6.29009 6.36943 6.65535 6.66192 6.72825 6.78476 6.85301 6.99348 7.06236 7.48061 7.74703 7.93881 8.29493 8.37160 8.75976 9.08290 9.65883 11.10313 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020999 B = 0.004562 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.084559 B = 6136.435561 C = 6611.902356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.211 3.789 3 H 0.002 0.998 4 C -0.492 4.492 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.894 3.106 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.678 5.678 13 C 0.096 3.904 14 H 0.086 0.914 15 C -0.106 4.106 16 C -0.084 4.084 17 C -0.061 4.061 18 C -0.038 4.038 19 Cl -0.076 7.076 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.050 4.050 24 C -0.111 4.111 25 H 0.004 0.996 26 H 0.036 0.964 27 H 0.084 0.916 28 H 0.259 0.741 29 H 0.316 0.684 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.078 0.922 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.728 2.403 -14.034 17.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.103 3.897 3 H 0.020 0.980 4 C -0.531 4.531 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.722 3.278 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.307 5.307 13 C -0.015 4.015 14 H 0.104 0.896 15 C -0.144 4.144 16 C -0.121 4.121 17 C -0.062 4.062 18 C -0.064 4.064 19 Cl -0.047 7.047 20 C -0.138 4.138 21 C -0.133 4.133 22 C -0.135 4.135 23 C -0.051 4.051 24 C -0.150 4.150 25 H 0.023 0.977 26 H 0.055 0.945 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.132 0.868 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.096 0.904 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.965 1.846 -13.511 16.889 hybrid contribution 0.276 0.599 0.499 0.827 sum 10.241 2.445 -13.012 16.738 Atomic orbital electron populations 1.21933 0.98310 1.00535 0.99081 1.19182 0.91442 0.92102 0.86925 0.98046 1.21177 1.30317 1.11988 0.89583 0.92054 1.24949 0.95413 0.95166 0.99011 1.69888 1.37378 1.23299 1.23256 0.86561 0.78400 0.80167 0.82659 1.20901 1.21396 1.19878 1.60785 1.01451 1.61120 1.07320 1.21473 0.92873 0.90409 0.96737 0.89553 1.21561 0.92799 0.99963 1.00063 1.20587 0.98771 0.91376 1.01382 1.19582 0.91152 0.97198 0.98242 1.20972 0.89414 0.91666 1.04350 1.98344 1.47054 1.62088 1.97256 1.20895 0.99902 0.91932 1.01105 1.20960 0.92827 0.99333 1.00220 1.21330 0.97774 0.96017 0.98416 1.19685 0.95495 0.92766 0.97118 1.21391 0.92594 1.01396 0.99608 0.97673 0.94508 0.89687 0.93151 0.86780 0.92511 0.90324 0.90500 0.90003 0.85363 0.85418 0.85654 0.90401 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.93 37.16 0.33 -2.99 16 2 C 0.21 5.14 2.43 -68.86 -0.17 4.97 16 3 H 0.00 0.05 7.29 -51.93 -0.38 -0.33 16 4 C -0.49 -13.43 8.50 -34.44 -0.29 -13.72 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.54 11.38 55.43 0.63 -24.91 16 8 Si 0.89 21.53 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.68 -13.74 6.07 -100.92 -0.61 -14.35 16 13 C 0.10 1.71 2.28 -67.68 -0.15 1.56 16 14 H 0.09 1.80 7.60 -51.93 -0.39 1.41 16 15 C -0.11 -1.61 5.59 -26.71 -0.15 -1.76 16 16 C -0.08 -1.17 5.01 -28.06 -0.14 -1.31 16 17 C -0.06 -0.87 5.74 -104.58 -0.60 -1.47 16 18 C -0.04 -0.49 6.31 -39.36 -0.25 -0.74 16 19 Cl -0.08 -0.91 27.26 -51.86 -1.41 -2.33 16 20 C -0.12 -1.38 9.82 -39.65 -0.39 -1.77 16 21 C -0.12 -1.27 10.05 -39.69 -0.40 -1.67 16 22 C -0.12 -1.47 9.61 -39.44 -0.38 -1.85 16 23 C -0.05 -0.71 5.74 -104.62 -0.60 -1.31 16 24 C -0.11 -1.72 4.98 -28.05 -0.14 -1.86 16 25 H 0.00 0.09 8.01 -51.93 -0.42 -0.33 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.08 2.22 6.24 -51.93 -0.32 1.90 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.32 5.79 7.88 -39.29 -0.31 5.48 16 30 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 0.97 7.23 -51.93 -0.38 0.60 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.13 1.37 8.05 -52.49 -0.42 0.95 16 37 H 0.08 1.29 7.62 -51.93 -0.40 0.90 16 38 H 0.07 1.06 7.94 -51.93 -0.41 0.65 16 LS Contribution 318.47 15.07 4.80 4.80 Total: -1.00 -28.15 318.47 -10.55 -38.70 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.51 Total: 4.07 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -3.42 Total: -22.48 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.02 Total: -39.26 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.41 Total: -2.33 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.15 -10.55 -38.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171021705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.672 kcal (2) G-P(sol) polarization free energy of solvation -28.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds