Wall clock time and date at job start Fri Apr 10 2020 17:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47370 * 120.00589 * 2 1 3 5 5 H 1.07995 * 120.00183 * 120.00216 * 4 2 1 6 6 C 1.37877 * 119.99645 * 299.99378 * 4 2 1 7 7 N 1.31509 * 120.00197 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99739 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46782 * 90.00533 * 8 6 4 10 10 H 1.48497 * 109.47254 * 210.00268 * 8 6 4 11 11 H 1.48493 * 109.47526 * 330.00846 * 8 6 4 12 12 N 1.46907 * 109.46936 * 240.00125 * 2 1 3 13 13 C 1.46904 * 110.99839 * 155.05485 * 12 2 1 14 14 H 1.08995 * 109.67846 * 34.31959 * 13 12 2 15 15 C 1.53316 * 109.72123 * 154.89357 * 13 12 2 16 16 C 1.52722 * 108.40336 * 189.63474 * 15 13 12 17 17 C 1.50631 * 110.56957 * 308.89894 * 16 15 13 18 18 C 1.39026 * 117.75684 * 197.68057 * 17 16 15 19 19 Cl 1.73602 * 119.74329 * 0.26801 * 18 17 16 20 20 C 1.38053 * 120.51553 * 180.26799 * 18 17 16 21 21 C 1.38240 * 119.76241 * 0.03375 * 20 18 17 22 22 C 1.37943 * 119.78119 * 359.86761 * 21 20 18 23 23 C 1.37637 * 122.57319 * 17.75048 * 17 16 15 24 24 C 1.50640 * 122.55906 * 359.25001 * 23 17 16 25 25 H 1.08993 * 109.47289 * 65.45989 * 1 2 3 26 26 H 1.09006 * 109.47343 * 185.46224 * 1 2 3 27 27 H 1.09007 * 109.46750 * 305.45407 * 1 2 3 28 28 H 0.97003 * 120.00465 * 179.97438 * 7 6 4 29 29 H 1.00899 * 110.99338 * 31.10194 * 12 2 1 30 30 H 1.09001 * 109.70594 * 69.88655 * 15 13 12 31 31 H 1.08997 * 109.64388 * 309.34828 * 15 13 12 32 32 H 1.09003 * 109.25383 * 188.63114 * 16 15 13 33 33 H 1.09003 * 109.25139 * 69.16718 * 16 15 13 34 34 H 1.08008 * 120.11864 * 180.02562 * 20 18 17 35 35 H 1.07996 * 120.11230 * 179.84895 * 21 20 18 36 36 H 1.07992 * 119.71154 * 179.97438 * 22 21 20 37 37 H 1.08999 * 109.25084 * 138.14032 * 24 23 17 38 38 H 1.09003 * 109.25631 * 257.57083 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9430 0.8295 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.6299 -0.5461 4.4122 10 1 1.3434 -0.9496 5.1119 11 1 2.4861 -2.5664 3.7117 12 7 2.0196 -0.6925 -1.1995 13 6 3.3675 -0.2325 -1.5596 14 1 3.9303 -0.0014 -0.6552 15 6 4.0920 -1.3253 -2.3543 16 6 5.5572 -0.9213 -2.5041 17 6 5.6671 0.4834 -3.0367 18 6 6.8842 0.8756 -3.5823 19 17 8.2062 -0.2483 -3.6357 20 6 7.0497 2.1518 -4.0820 21 6 5.9975 3.0474 -4.0391 22 6 4.7887 2.6589 -3.4998 23 6 4.6187 1.3744 -2.9989 24 6 3.2685 1.0140 -2.4367 25 1 -0.3633 0.4268 -0.9348 26 1 -0.3634 -1.0230 0.0978 27 1 -0.3633 0.5961 0.8372 28 1 0.7084 1.1607 3.4845 29 1 1.3796 -0.5759 -1.9708 30 1 3.6366 -1.4265 -3.3394 31 1 4.0252 -2.2726 -1.8194 32 1 6.0503 -1.6066 -3.1936 33 1 6.0464 -0.9762 -1.5316 34 1 7.9979 2.4496 -4.5048 35 1 6.1214 4.0479 -4.4261 36 1 3.9676 3.3595 -3.4665 37 1 2.8945 1.8453 -1.8390 38 1 2.5769 0.8223 -3.2571 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171021705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:28 Heat of formation + Delta-G solvation = -14.595730 kcal Electronic energy + Delta-G solvation = -19500.105731 eV Core-core repulsion = 16559.419063 eV Total energy + Delta-G solvation = -2940.686668 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.14679 -38.51072 -37.38960 -36.07818 -34.10966 -32.99355 -31.33815 -29.95397 -28.04620 -27.23013 -24.56644 -23.16975 -23.07403 -22.13826 -20.34424 -18.23575 -17.65283 -16.90361 -16.85047 -16.34944 -15.76105 -15.50433 -15.26580 -15.06528 -14.53011 -14.40454 -14.13222 -13.94993 -13.40500 -13.18591 -12.92059 -12.81062 -12.74481 -12.60983 -12.45756 -12.25896 -12.15076 -11.98818 -11.95745 -11.74365 -11.45924 -11.22309 -11.04649 -10.50176 -9.60012 -9.56792 -8.95295 -8.07652 -6.17656 0.18306 0.31364 1.17345 1.40681 1.41959 1.52525 2.44131 2.63226 3.19464 3.46978 3.68165 3.81345 3.97452 4.06146 4.11818 4.26363 4.42765 4.48839 4.57624 4.61863 4.77669 4.80499 4.85380 4.92941 4.98286 5.02771 5.07284 5.13774 5.21379 5.35494 5.37568 5.48221 5.55225 5.61617 5.74534 5.87483 5.88777 6.34310 6.51849 6.95634 7.03832 7.51463 8.97146 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020999 B = 0.004562 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.084559 B = 6136.435561 C = 6611.902356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.217 3.783 3 H -0.027 1.027 4 C -0.508 4.508 5 H 0.049 0.951 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.952 3.048 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.679 5.679 13 C 0.098 3.902 14 H 0.047 0.953 15 C -0.096 4.096 16 C -0.078 4.078 17 C -0.079 4.079 18 C -0.048 4.048 19 Cl -0.070 7.070 20 C -0.117 4.117 21 C -0.107 4.107 22 C -0.123 4.123 23 C -0.070 4.070 24 C -0.099 4.099 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.058 0.942 28 H 0.260 0.740 29 H 0.329 0.671 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.153 0.847 35 H 0.161 0.839 36 H 0.138 0.862 37 H 0.059 0.941 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.776 2.756 -15.483 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.109 3.891 3 H -0.009 1.009 4 C -0.547 4.547 5 H 0.067 0.933 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.779 3.221 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.195 1.195 12 N -0.309 5.309 13 C -0.013 4.013 14 H 0.065 0.935 15 C -0.134 4.134 16 C -0.115 4.115 17 C -0.079 4.079 18 C -0.075 4.075 19 Cl -0.042 7.042 20 C -0.135 4.135 21 C -0.125 4.125 22 C -0.142 4.142 23 C -0.071 4.071 24 C -0.138 4.138 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.171 0.829 35 H 0.179 0.821 36 H 0.156 0.844 37 H 0.078 0.922 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.020 2.194 -14.979 18.725 hybrid contribution -0.001 0.527 0.895 1.038 sum 11.020 2.720 -14.084 18.088 Atomic orbital electron populations 1.21752 0.97654 0.99858 0.99553 1.18937 0.91855 0.90473 0.87857 1.00943 1.21432 1.30285 1.11779 0.91168 0.93304 1.25656 0.95652 0.95878 1.01679 1.70005 1.38129 1.24292 1.23808 0.85637 0.77945 0.79146 0.79396 1.20539 1.20790 1.19540 1.60665 1.02738 1.60714 1.06764 1.21394 0.91147 0.92713 0.96036 0.93451 1.21448 0.93613 0.98309 1.00021 1.20506 0.97592 0.92172 1.01232 1.19611 0.91941 0.97121 0.99274 1.21100 0.89209 0.92568 1.04598 1.98344 1.46539 1.62035 1.97239 1.21262 1.01073 0.91177 1.00005 1.21341 0.91750 1.00633 0.98813 1.21544 0.99069 0.95382 0.98164 1.19647 0.94872 0.94031 0.98578 1.21165 0.94138 0.99254 0.99240 0.94660 0.94972 0.92315 0.93122 0.85305 0.90968 0.91403 0.89051 0.91158 0.82927 0.82117 0.84376 0.92218 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.19 8.93 71.98 0.64 -5.54 16 2 C 0.22 10.85 2.43 44.17 0.11 10.96 16 3 H -0.03 -1.49 7.29 -2.39 -0.02 -1.50 16 4 C -0.51 -28.42 8.50 25.60 0.22 -28.20 16 5 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 6 C 0.01 0.52 5.30 84.66 0.45 0.97 16 7 N -0.92 -53.38 11.38 21.45 0.24 -53.13 16 8 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 9 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 12 N -0.68 -27.85 6.07 -473.21 -2.87 -30.72 16 13 C 0.10 3.56 2.28 44.93 0.10 3.67 16 14 H 0.05 2.09 7.60 -2.39 -0.02 2.07 16 15 C -0.10 -2.91 5.59 30.61 0.17 -2.74 16 16 C -0.08 -2.14 5.01 29.73 0.15 -2.00 16 17 C -0.08 -2.17 5.74 -19.84 -0.11 -2.28 16 18 C -0.05 -1.17 6.31 22.41 0.14 -1.03 16 19 Cl -0.07 -1.57 27.26 -2.72 -0.07 -1.65 16 20 C -0.12 -2.35 9.82 22.23 0.22 -2.13 16 21 C -0.11 -2.04 10.05 22.20 0.22 -1.81 16 22 C -0.12 -2.86 9.61 22.36 0.21 -2.64 16 23 C -0.07 -1.96 5.74 -19.86 -0.11 -2.08 16 24 C -0.10 -3.07 4.98 29.74 0.15 -2.92 16 25 H 0.03 1.42 8.01 -2.39 -0.02 1.40 16 26 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.06 3.11 6.24 -2.38 -0.01 3.10 16 28 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.33 11.87 7.88 -89.69 -0.71 11.17 16 30 H 0.07 1.97 8.10 -2.39 -0.02 1.95 16 31 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.09 2.22 7.23 -2.39 -0.02 2.20 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 35 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 36 H 0.14 2.76 8.05 -2.91 -0.02 2.74 16 37 H 0.06 2.04 7.62 -2.39 -0.02 2.02 16 38 H 0.09 2.45 7.94 -2.39 -0.02 2.43 16 Total: -1.00 -61.11 318.47 2.23 -58.88 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.35 Total: 17.72 kcal Atomic # 6 Polarization: -40.34 SS G_CDS: 2.56 Total: -37.79 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -2.63 Total: -83.85 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.07 Total: -1.65 kcal Total: -61.11 2.23 -58.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171021705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.280 kcal (2) G-P(sol) polarization free energy of solvation -61.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds