Wall clock time and date at job start Fri Apr 10 2020 17:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 110.00321 * 2 1 4 4 C 1.54334 * 109.98888 * 238.96244 * 2 1 3 5 5 H 1.09005 * 110.51658 * 336.97909 * 4 2 1 6 6 C 1.50699 * 111.00235 * 100.12836 * 4 2 1 7 7 C 1.38238 * 120.00527 * 66.19439 * 6 4 2 8 8 C 1.38223 * 120.00917 * 179.77029 * 7 6 4 9 9 C 1.38261 * 120.02896 * 0.50295 * 8 7 6 10 10 C 1.38198 * 120.01254 * 359.74666 * 9 8 7 11 11 C 1.38329 * 120.00820 * 246.46499 * 6 4 2 12 12 Cl 1.73605 * 120.01185 * 359.96045 * 11 6 4 13 13 C 1.55161 * 103.01893 * 218.66905 * 4 2 1 14 14 C 1.54904 * 101.58494 * 35.30592 * 13 4 2 15 15 N 1.47025 * 109.88032 * 121.09607 * 2 1 3 16 16 C 1.36928 * 125.65080 * 298.39119 * 15 2 1 17 17 H 1.08007 * 119.99618 * 343.31629 * 16 15 2 18 18 C 1.38809 * 120.00364 * 163.31628 * 16 15 2 19 19 N 1.31614 * 120.00042 * 332.51468 * 18 16 15 20 20 Si 1.86801 * 119.99930 * 152.50879 * 18 16 15 21 21 H 1.48500 * 109.46970 * 180.02562 * 20 18 16 22 22 H 1.48495 * 109.47110 * 60.00307 * 20 18 16 23 23 H 1.48500 * 109.47112 * 300.00036 * 20 18 16 24 24 H 1.09003 * 109.46959 * 300.36097 * 1 2 3 25 25 H 1.08997 * 109.46730 * 60.35311 * 1 2 3 26 26 H 1.08997 * 109.47374 * 180.35873 * 1 2 3 27 27 H 1.08992 * 109.47579 * 174.17520 * 3 2 1 28 28 H 1.09007 * 109.46853 * 294.18023 * 3 2 1 29 29 H 1.09004 * 109.46884 * 54.17124 * 3 2 1 30 30 H 1.08002 * 119.99642 * 359.97438 * 7 6 4 31 31 H 1.08002 * 119.98166 * 180.22944 * 8 7 6 32 32 H 1.08003 * 119.99781 * 179.76998 * 9 8 7 33 33 H 1.07994 * 120.00714 * 180.02562 * 10 9 8 34 34 H 1.09004 * 111.00256 * 277.22745 * 13 4 2 35 35 H 1.08997 * 111.03668 * 153.39708 * 13 4 2 36 36 H 1.08997 * 110.36687 * 204.15626 * 14 13 4 37 37 H 1.09001 * 110.45781 * 81.87275 * 14 13 4 38 38 H 0.97005 * 119.99798 * 356.13627 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0534 1.4377 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 1.3052 -1.4406 -1.6197 6 6 2.4747 0.2208 -2.3192 7 6 3.5537 1.0601 -2.1137 8 6 3.9393 1.9452 -3.1029 9 6 3.2399 1.9989 -4.2943 10 6 2.1578 1.1639 -4.4989 11 6 1.7746 0.2740 -3.5111 12 17 0.4157 -0.7755 -3.7675 13 6 3.2863 -1.5185 -0.6914 14 6 2.8099 -1.8826 0.7368 15 7 2.0300 -0.7141 1.1839 16 6 1.8039 -0.3565 2.4862 17 1 1.4557 0.6388 2.7202 18 6 2.0220 -1.2730 3.5056 19 7 1.9120 -2.5624 3.2659 20 14 2.4718 -0.6762 5.2177 21 1 2.6510 -1.8438 6.1176 22 1 1.3856 0.1906 5.7410 23 1 3.7370 0.0988 5.1552 24 1 -0.3633 0.5194 0.8868 25 1 -0.3633 0.5083 -0.8931 26 1 -0.3634 -1.0276 0.0064 27 1 3.1383 1.4295 0.1043 28 1 1.7821 1.9231 -0.9376 29 1 1.6124 1.9849 0.8332 30 1 4.0976 1.0220 -1.1814 31 1 4.7847 2.5981 -2.9433 32 1 3.5393 2.6933 -5.0654 33 1 1.6118 1.2057 -5.4297 34 1 4.1670 -0.8770 -0.6580 35 1 3.4812 -2.4156 -1.2789 36 1 3.6655 -2.0413 1.3932 37 1 2.1805 -2.7722 0.7133 38 1 1.6241 -2.8705 2.3924 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175714437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:48 Heat of formation + Delta-G solvation = 41.884613 kcal Electronic energy + Delta-G solvation = -20469.221216 eV Core-core repulsion = 17530.983720 eV Total energy + Delta-G solvation = -2938.237497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.14015 -37.80127 -36.33758 -33.49066 -31.57759 -31.01881 -30.71591 -28.24982 -26.56520 -25.17492 -23.63648 -22.47572 -21.85773 -20.09951 -18.75257 -17.09006 -16.60595 -15.74118 -15.32193 -14.67063 -14.19502 -13.95175 -13.70852 -13.60766 -13.24616 -12.86074 -12.66293 -12.26692 -11.99507 -11.81784 -11.61953 -11.33229 -11.31873 -11.08081 -10.80078 -10.68465 -10.47318 -10.31132 -10.23502 -9.95464 -9.86681 -9.80784 -9.44182 -8.71975 -8.45488 -8.33567 -6.88433 -6.04139 -3.06015 1.22047 1.32672 2.24789 3.52328 3.56052 3.67334 3.73787 4.59236 4.77854 4.81480 4.98987 5.20368 5.27089 5.37698 5.40897 5.44746 5.61163 5.68329 5.77155 5.97740 6.01285 6.05695 6.16600 6.25347 6.26447 6.32479 6.38673 6.47077 6.59491 6.64638 6.67809 6.71881 6.86656 6.99619 7.01380 7.08592 7.21096 7.89242 8.56023 9.10388 9.89700 10.45724 11.30652 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027112 B = 0.005634 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.522003 B = 4968.999615 C = 5355.636736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.193 3.807 3 C -0.150 4.150 4 C -0.065 4.065 5 H 0.090 0.910 6 C -0.042 4.042 7 C -0.096 4.096 8 C -0.121 4.121 9 C -0.120 4.120 10 C -0.116 4.116 11 C -0.036 4.036 12 Cl -0.072 7.072 13 C -0.128 4.128 14 C 0.144 3.856 15 N -0.590 5.590 16 C -0.326 4.326 17 H 0.064 0.936 18 C -0.028 4.028 19 N -0.921 5.921 20 Si 1.064 2.936 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.295 1.295 24 H 0.053 0.947 25 H 0.037 0.963 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.140 0.860 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.026 0.974 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.353 7.077 -15.361 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.104 3.896 3 C -0.209 4.209 4 C -0.084 4.084 5 H 0.108 0.892 6 C -0.043 4.043 7 C -0.114 4.114 8 C -0.139 4.139 9 C -0.138 4.138 10 C -0.134 4.134 11 C -0.063 4.063 12 Cl -0.043 7.043 13 C -0.167 4.167 14 C 0.019 3.981 15 N -0.314 5.314 16 C -0.454 4.454 17 H 0.082 0.918 18 C -0.229 4.229 19 N -0.563 5.563 20 Si 0.894 3.106 21 H -0.212 1.212 22 H -0.222 1.222 23 H -0.223 1.223 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.157 0.843 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.618 6.502 -13.710 15.398 hybrid contribution -0.714 0.496 -1.578 1.802 sum 1.904 6.998 -15.288 16.922 Atomic orbital electron populations 1.22127 0.97273 1.00916 0.99891 1.20165 0.91952 0.91397 0.86040 1.22491 1.00926 0.97793 0.99671 1.21390 0.98680 0.95566 0.92796 0.89213 1.19704 0.94380 0.97016 0.93196 1.21337 0.96132 0.94684 0.99249 1.21218 0.99982 0.99112 0.93557 1.21005 0.95674 0.99321 0.97844 1.20946 0.98093 0.95915 0.98485 1.20832 0.92543 0.96728 0.96195 1.98351 1.43812 1.65767 1.96360 1.22959 0.96422 0.99127 0.98155 1.21529 0.94737 0.90725 0.91131 1.44645 1.57526 1.28581 1.00678 1.19655 1.46810 0.97657 0.81275 0.91831 1.25661 1.00448 0.94027 1.02768 1.70788 1.46265 1.14279 1.24952 0.83521 0.76302 0.74968 0.75802 1.21213 1.22179 1.22277 0.92786 0.94426 0.93424 0.92571 0.93831 0.93317 0.84286 0.85721 0.85643 0.85445 0.91505 0.91846 0.93008 0.95649 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.45 37.16 0.31 -2.58 16 2 C 0.19 3.92 0.92 -130.83 -0.12 3.80 16 3 C -0.15 -2.80 6.92 37.16 0.26 -2.55 16 4 C -0.07 -1.15 2.50 -89.93 -0.23 -1.38 16 5 H 0.09 1.62 6.05 -51.93 -0.31 1.31 16 6 C -0.04 -0.64 3.93 -104.59 -0.41 -1.05 16 7 C -0.10 -1.33 6.38 -39.59 -0.25 -1.59 16 8 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 9 C -0.12 -1.28 10.05 -39.59 -0.40 -1.68 16 10 C -0.12 -1.36 9.83 -39.55 -0.39 -1.75 16 11 C -0.04 -0.51 6.31 -39.50 -0.25 -0.76 16 12 Cl -0.07 -1.00 27.07 -51.86 -1.40 -2.40 16 13 C -0.13 -2.33 6.43 -24.58 -0.16 -2.49 16 14 C 0.14 3.32 5.27 -2.53 -0.01 3.31 16 15 N -0.59 -14.43 2.78 -155.36 -0.43 -14.86 16 16 C -0.33 -8.97 9.27 -15.06 -0.14 -9.11 16 17 H 0.06 1.77 7.68 -52.48 -0.40 1.36 16 18 C -0.03 -0.78 5.09 -17.43 -0.09 -0.87 16 19 N -0.92 -27.76 12.97 55.49 0.72 -27.04 16 20 Si 1.06 25.47 30.00 -169.99 -5.10 20.37 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 24 H 0.05 1.16 8.02 -51.93 -0.42 0.74 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 1.03 5.85 -51.93 -0.30 0.72 16 28 H 0.04 0.73 6.19 -51.92 -0.32 0.41 16 29 H 0.05 0.97 7.85 -51.93 -0.41 0.56 16 30 H 0.14 2.00 5.03 -52.49 -0.26 1.73 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 33 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.07 1.15 6.39 -51.93 -0.33 0.82 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.05 1.30 7.91 -51.93 -0.41 0.89 16 37 H 0.03 0.63 6.77 -51.93 -0.35 0.28 16 38 H 0.27 8.12 5.86 -40.82 -0.24 7.88 16 LS Contribution 307.75 15.07 4.64 4.64 Total: -1.00 -29.97 307.75 -8.94 -38.91 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.10 Total: 0.85 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -2.27 Total: -20.47 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.29 Total: -41.90 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.10 Total: 20.37 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.40 Total: -2.40 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.97 -8.94 -38.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175714437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.797 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds