Wall clock time and date at job start Fri Apr 10 2020 17:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 110.00321 * 2 1 4 4 C 1.54334 * 109.98888 * 238.96244 * 2 1 3 5 5 H 1.09005 * 110.51658 * 336.97909 * 4 2 1 6 6 C 1.50699 * 111.00235 * 100.12836 * 4 2 1 7 7 C 1.38238 * 120.00527 * 66.19439 * 6 4 2 8 8 C 1.38223 * 120.00917 * 179.77029 * 7 6 4 9 9 C 1.38261 * 120.02896 * 0.50295 * 8 7 6 10 10 C 1.38198 * 120.01254 * 359.74666 * 9 8 7 11 11 C 1.38329 * 120.00820 * 246.46499 * 6 4 2 12 12 Cl 1.73605 * 120.01185 * 359.96045 * 11 6 4 13 13 C 1.55161 * 103.01893 * 218.66905 * 4 2 1 14 14 C 1.54904 * 101.58494 * 35.30592 * 13 4 2 15 15 N 1.47025 * 109.88032 * 121.09607 * 2 1 3 16 16 C 1.36928 * 125.65080 * 298.39119 * 15 2 1 17 17 H 1.08007 * 119.99618 * 343.31629 * 16 15 2 18 18 C 1.38809 * 120.00364 * 163.31628 * 16 15 2 19 19 N 1.31614 * 120.00042 * 332.51468 * 18 16 15 20 20 Si 1.86801 * 119.99930 * 152.50879 * 18 16 15 21 21 H 1.48500 * 109.46970 * 180.02562 * 20 18 16 22 22 H 1.48495 * 109.47110 * 60.00307 * 20 18 16 23 23 H 1.48500 * 109.47112 * 300.00036 * 20 18 16 24 24 H 1.09003 * 109.46959 * 300.36097 * 1 2 3 25 25 H 1.08997 * 109.46730 * 60.35311 * 1 2 3 26 26 H 1.08997 * 109.47374 * 180.35873 * 1 2 3 27 27 H 1.08992 * 109.47579 * 174.17520 * 3 2 1 28 28 H 1.09007 * 109.46853 * 294.18023 * 3 2 1 29 29 H 1.09004 * 109.46884 * 54.17124 * 3 2 1 30 30 H 1.08002 * 119.99642 * 359.97438 * 7 6 4 31 31 H 1.08002 * 119.98166 * 180.22944 * 8 7 6 32 32 H 1.08003 * 119.99781 * 179.76998 * 9 8 7 33 33 H 1.07994 * 120.00714 * 180.02562 * 10 9 8 34 34 H 1.09004 * 111.00256 * 277.22745 * 13 4 2 35 35 H 1.08997 * 111.03668 * 153.39708 * 13 4 2 36 36 H 1.08997 * 110.36687 * 204.15626 * 14 13 4 37 37 H 1.09001 * 110.45781 * 81.87275 * 14 13 4 38 38 H 0.97005 * 119.99798 * 356.13627 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0534 1.4377 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 1.3052 -1.4406 -1.6197 6 6 2.4747 0.2208 -2.3192 7 6 3.5537 1.0601 -2.1137 8 6 3.9393 1.9452 -3.1029 9 6 3.2399 1.9989 -4.2943 10 6 2.1578 1.1639 -4.4989 11 6 1.7746 0.2740 -3.5111 12 17 0.4157 -0.7755 -3.7675 13 6 3.2863 -1.5185 -0.6914 14 6 2.8099 -1.8826 0.7368 15 7 2.0300 -0.7141 1.1839 16 6 1.8039 -0.3565 2.4862 17 1 1.4557 0.6388 2.7202 18 6 2.0220 -1.2730 3.5056 19 7 1.9120 -2.5624 3.2659 20 14 2.4718 -0.6762 5.2177 21 1 2.6510 -1.8438 6.1176 22 1 1.3856 0.1906 5.7410 23 1 3.7370 0.0988 5.1552 24 1 -0.3633 0.5194 0.8868 25 1 -0.3633 0.5083 -0.8931 26 1 -0.3634 -1.0276 0.0064 27 1 3.1383 1.4295 0.1043 28 1 1.7821 1.9231 -0.9376 29 1 1.6124 1.9849 0.8332 30 1 4.0976 1.0220 -1.1814 31 1 4.7847 2.5981 -2.9433 32 1 3.5393 2.6933 -5.0654 33 1 1.6118 1.2057 -5.4297 34 1 4.1670 -0.8770 -0.6580 35 1 3.4812 -2.4156 -1.2789 36 1 3.6655 -2.0413 1.3932 37 1 2.1805 -2.7722 0.7133 38 1 1.6241 -2.8705 2.3924 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175714437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:48 Heat of formation + Delta-G solvation = 26.837358 kcal Electronic energy + Delta-G solvation = -20469.873714 eV Core-core repulsion = 17530.983720 eV Total energy + Delta-G solvation = -2938.889995 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.41199 -39.17703 -37.36756 -35.31340 -33.16526 -32.57929 -31.70640 -29.92452 -28.10845 -26.78231 -25.49377 -23.60149 -23.01999 -21.76369 -20.37916 -18.79722 -17.88209 -16.97735 -16.55652 -16.13814 -15.70163 -15.49297 -15.24175 -14.98615 -14.76418 -14.23555 -14.12484 -13.77552 -13.51769 -13.30956 -13.03547 -12.77199 -12.60111 -12.43926 -12.27539 -12.14241 -12.06031 -11.98063 -11.85737 -11.76268 -11.48871 -11.33586 -11.24099 -10.44264 -9.69220 -9.51227 -8.94305 -8.26345 -5.23990 0.25419 0.36584 1.23117 1.57314 1.65464 1.83581 2.65487 2.72064 3.26028 3.39286 3.66402 3.75294 3.93685 4.02543 4.17057 4.27185 4.34878 4.39594 4.44665 4.46533 4.63063 4.73787 4.76678 4.79086 4.84841 4.95110 5.02599 5.06084 5.10891 5.17145 5.28570 5.33547 5.37892 5.51854 5.54213 5.65137 5.78541 5.94049 6.39149 6.99468 7.79679 8.39396 9.08286 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027112 B = 0.005634 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.522003 B = 4968.999615 C = 5355.636736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.181 3.819 3 C -0.136 4.136 4 C -0.052 4.052 5 H 0.082 0.918 6 C -0.063 4.063 7 C -0.107 4.107 8 C -0.115 4.115 9 C -0.107 4.107 10 C -0.115 4.115 11 C -0.047 4.047 12 Cl -0.080 7.080 13 C -0.114 4.114 14 C 0.148 3.852 15 N -0.607 5.607 16 C -0.323 4.323 17 H 0.058 0.942 18 C -0.084 4.084 19 N -0.953 5.953 20 Si 1.113 2.887 21 H -0.295 1.295 22 H -0.278 1.278 23 H -0.281 1.281 24 H 0.033 0.967 25 H 0.063 0.937 26 H 0.028 0.972 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.130 0.870 31 H 0.152 0.848 32 H 0.162 0.838 33 H 0.149 0.851 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.022 0.978 37 H -0.001 1.001 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.404 9.506 -17.690 20.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.094 3.906 3 C -0.194 4.194 4 C -0.071 4.071 5 H 0.100 0.900 6 C -0.064 4.064 7 C -0.125 4.125 8 C -0.132 4.132 9 C -0.124 4.124 10 C -0.133 4.133 11 C -0.074 4.074 12 Cl -0.051 7.051 13 C -0.152 4.152 14 C 0.022 3.978 15 N -0.332 5.332 16 C -0.452 4.452 17 H 0.076 0.924 18 C -0.279 4.279 19 N -0.597 5.597 20 Si 0.938 3.062 21 H -0.221 1.221 22 H -0.204 1.204 23 H -0.207 1.207 24 H 0.052 0.948 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.147 0.853 31 H 0.170 0.830 32 H 0.180 0.820 33 H 0.167 0.833 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.040 0.960 37 H 0.017 0.983 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.662 8.963 -16.077 18.767 hybrid contribution -1.052 -0.195 -0.984 1.453 sum 2.610 8.768 -17.060 19.358 Atomic orbital electron populations 1.22029 0.97484 0.99727 1.00077 1.20441 0.91861 0.92442 0.85867 1.22340 1.00881 0.96184 0.99991 1.21158 0.97784 0.95708 0.92436 0.90002 1.19443 0.96074 0.97806 0.93065 1.21319 0.95908 0.95443 0.99838 1.21542 1.00456 0.98273 0.92971 1.21455 0.94220 0.98653 0.98119 1.21279 0.98414 0.95030 0.98601 1.20980 0.92491 0.97409 0.96504 1.98350 1.44251 1.66200 1.96334 1.22857 0.97175 1.00346 0.94845 1.21398 0.93070 0.89675 0.93635 1.44880 1.58146 1.29074 1.01087 1.19852 1.45195 0.97114 0.82996 0.92423 1.26975 1.00827 0.93740 1.06347 1.70901 1.49061 1.15407 1.24349 0.82858 0.76986 0.74520 0.71787 1.22100 1.20422 1.20719 0.94813 0.91856 0.95254 0.92221 0.91569 0.95209 0.85278 0.82992 0.82000 0.83289 0.90204 0.89910 0.96005 0.98307 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.51 8.45 71.98 0.61 -4.90 16 2 C 0.18 7.39 0.92 3.96 0.00 7.39 16 3 C -0.14 -4.93 6.92 71.98 0.50 -4.43 16 4 C -0.05 -1.80 2.50 -10.35 -0.03 -1.83 16 5 H 0.08 2.95 6.05 -2.38 -0.01 2.94 16 6 C -0.06 -1.78 3.93 -19.84 -0.08 -1.85 16 7 C -0.11 -2.66 6.38 22.27 0.14 -2.52 16 8 C -0.11 -2.10 10.05 22.27 0.22 -1.88 16 9 C -0.11 -1.70 10.05 22.27 0.22 -1.48 16 10 C -0.11 -2.22 9.83 22.29 0.22 -2.00 16 11 C -0.05 -1.20 6.31 22.32 0.14 -1.06 16 12 Cl -0.08 -2.11 27.07 -2.72 -0.07 -2.18 16 13 C -0.11 -4.13 6.43 31.99 0.21 -3.93 16 14 C 0.15 7.11 5.27 86.85 0.46 7.57 16 15 N -0.61 -30.62 2.78 -645.45 -1.79 -32.42 16 16 C -0.32 -18.25 9.27 84.03 0.78 -17.47 16 17 H 0.06 3.27 7.68 -2.91 -0.02 3.25 16 18 C -0.08 -4.87 5.09 84.86 0.43 -4.44 16 19 N -0.95 -59.87 12.97 21.65 0.28 -59.59 16 20 Si 1.11 52.37 30.00 68.60 2.06 54.43 16 21 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H 0.03 1.47 8.02 -2.39 -0.02 1.45 16 25 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.03 1.26 8.14 -2.39 -0.02 1.25 16 27 H 0.06 2.12 5.85 -2.39 -0.01 2.10 16 28 H 0.07 2.10 6.19 -2.38 -0.01 2.08 16 29 H 0.03 1.16 7.85 -2.38 -0.02 1.14 16 30 H 0.13 3.43 5.03 -2.91 -0.01 3.42 16 31 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.08 2.68 6.39 -2.38 -0.02 2.67 16 35 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.02 1.15 7.91 -2.39 -0.02 1.13 16 37 H 0.00 -0.04 6.77 -2.39 -0.02 -0.06 16 38 H 0.25 16.27 5.86 -92.70 -0.54 15.72 16 Total: -1.00 -67.35 307.75 5.58 -61.77 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.28 Total: 10.81 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 3.83 Total: -32.82 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -1.51 Total: -92.01 kcal Atomic # 14 Polarization: 52.37 SS G_CDS: 2.06 Total: 54.43 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -0.07 Total: -2.18 kcal Total: -67.35 5.58 -61.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175714437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.609 kcal (2) G-P(sol) polarization free energy of solvation -67.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds