Wall clock time and date at job start Fri Apr 10 2020 17:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46950 * 2 1 4 4 C 1.52998 * 109.47374 * 240.00000 * 2 1 3 5 5 C 1.50698 * 109.46753 * 64.99517 * 4 2 1 6 6 H 1.07996 * 120.00381 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99953 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99880 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00152 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47065 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46697 * 120.00340 * 9 7 5 12 12 H 1.48494 * 109.47346 * 240.00278 * 9 7 5 13 13 C 1.52999 * 109.47383 * 119.99720 * 2 1 3 14 14 N 1.46897 * 109.47238 * 296.17250 * 13 2 1 15 15 C 1.47910 * 111.00060 * 284.16554 * 14 13 2 16 16 C 1.54601 * 102.62524 * 265.48980 * 15 14 13 17 17 C 1.51570 * 102.83798 * 334.46259 * 16 15 14 18 18 C 1.38979 * 107.95450 * 15.93503 * 17 16 15 19 19 C 1.39374 * 119.10080 * 180.77280 * 18 17 16 20 20 C 1.37957 * 120.22438 * 359.71921 * 19 18 17 21 21 C 1.38244 * 120.27836 * 359.97438 * 20 19 18 22 22 C 1.37992 * 131.57186 * 196.32449 * 17 16 15 23 23 Cl 1.73604 * 119.97100 * 359.28722 * 22 17 16 24 24 H 1.08998 * 109.47369 * 294.73648 * 1 2 3 25 25 H 1.08991 * 109.47466 * 54.74405 * 1 2 3 26 26 H 1.09005 * 109.46937 * 174.74150 * 1 2 3 27 27 H 1.08996 * 109.47386 * 184.99643 * 4 2 1 28 28 H 1.08995 * 109.46876 * 305.00222 * 4 2 1 29 29 H 0.96997 * 120.00398 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.47132 * 56.17064 * 13 2 1 31 31 H 1.08999 * 109.47381 * 176.16801 * 13 2 1 32 32 H 1.08997 * 110.77431 * 23.77894 * 15 14 13 33 33 H 1.09002 * 110.77492 * 147.20250 * 15 14 13 34 34 H 1.09003 * 110.73642 * 216.12569 * 16 15 14 35 35 H 1.08994 * 110.89663 * 92.87576 * 16 15 14 36 36 H 1.07995 * 119.88654 * 179.69985 * 19 18 17 37 37 H 1.07995 * 119.86253 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.06778 * 180.16024 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4765 6 1 1.0805 0.9745 -2.3756 7 6 1.9932 -0.4016 -3.7282 8 7 2.6765 -1.5186 -3.8511 9 14 1.4983 0.5627 -5.2496 10 1 0.7409 1.7736 -4.8434 11 1 2.7162 0.9683 -5.9963 12 1 0.6450 -0.2871 -6.1185 13 6 2.0401 -0.7212 1.2492 14 7 1.6274 0.0227 2.4469 15 6 2.4583 1.2322 2.6321 16 6 3.5587 0.7412 3.6006 17 6 2.8830 -0.4065 4.3241 18 6 1.7548 -0.7667 3.5967 19 6 0.9453 -1.7986 4.0680 20 6 1.2670 -2.4544 5.2383 21 6 2.3947 -2.0937 5.9521 22 6 3.2026 -1.0674 5.4925 23 17 4.6189 -0.6117 6.3871 24 1 -0.3634 0.4300 0.9333 25 1 -0.3634 0.5931 -0.8391 26 1 -0.3633 -1.0234 -0.0942 27 1 3.1263 -0.7994 -1.2056 28 1 1.6054 -1.7197 -1.2951 29 1 2.9238 -1.8416 -4.7317 30 1 1.6218 -1.7271 1.2843 31 1 3.1279 -0.7810 1.2156 32 1 2.8916 1.5524 1.6846 33 1 1.8762 2.0357 3.0834 34 1 3.8361 1.5291 4.3009 35 1 4.4321 0.3903 3.0510 36 1 0.0629 -2.0856 3.5154 37 1 0.6353 -3.2529 5.5984 38 1 2.6447 -2.6111 6.8664 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180750148.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:38 Heat of formation + Delta-G solvation = 13.850747 kcal Electronic energy + Delta-G solvation = -19248.676002 eV Core-core repulsion = 16309.222866 eV Total energy + Delta-G solvation = -2939.453137 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.85427 -37.49635 -36.35919 -34.98635 -32.51185 -31.54726 -29.48404 -28.84405 -26.83582 -25.64276 -23.25401 -22.93209 -21.49763 -20.93115 -18.81311 -16.99104 -16.35011 -16.21406 -15.61457 -15.39578 -14.54702 -14.32569 -13.99940 -13.80420 -13.38594 -13.13680 -12.72780 -12.42165 -12.26371 -11.95211 -11.67721 -11.59605 -11.42987 -11.24751 -11.04602 -10.99956 -10.88482 -10.80062 -10.43778 -10.32703 -9.72951 -9.47351 -9.17067 -8.92637 -8.76369 -8.35253 -7.86017 -5.99734 -4.01059 1.08378 1.14169 2.02914 3.30885 3.38705 3.42349 3.45723 3.74549 4.44801 4.48453 4.69782 4.87714 5.07054 5.12518 5.24395 5.31778 5.36363 5.52893 5.56509 5.70437 5.76795 5.80178 6.01510 6.05793 6.07263 6.22595 6.26738 6.30700 6.44874 6.51876 6.64567 6.93992 7.02431 7.14619 7.23518 7.33975 7.65955 7.80561 7.99932 8.43497 9.05444 9.62699 11.11807 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031564 B = 0.003577 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.867943 B = 7825.952844 C = 8075.500716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.079 4.079 3 H 0.057 0.943 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.487 5.487 15 C 0.049 3.951 16 C -0.107 4.107 17 C -0.137 4.137 18 C 0.118 3.882 19 C -0.112 4.112 20 C -0.092 4.092 21 C -0.134 4.134 22 C -0.002 4.002 23 Cl -0.079 7.079 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.040 0.960 27 H 0.013 0.987 28 H 0.016 0.984 29 H 0.259 0.741 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.061 0.819 19.965 19.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.098 4.098 3 H 0.076 0.924 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.061 4.061 14 N -0.203 5.203 15 C -0.078 4.078 16 C -0.145 4.145 17 C -0.141 4.141 18 C 0.021 3.979 19 C -0.132 4.132 20 C -0.110 4.110 21 C -0.154 4.154 22 C -0.030 4.030 23 Cl -0.050 7.050 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.031 0.969 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.397 0.919 19.746 19.772 hybrid contribution 0.725 0.221 -0.707 1.037 sum 0.329 1.140 19.039 19.076 Atomic orbital electron populations 1.21592 0.95641 1.00797 1.00101 1.21247 0.96122 0.99092 0.93373 0.92426 1.19136 0.95967 0.95599 0.90354 1.21249 1.34596 1.08308 0.90884 0.92476 1.25020 0.95298 0.95086 0.99115 1.69973 1.39096 1.21238 1.23313 0.86576 0.78262 0.80140 0.83280 1.19728 1.21107 1.21075 1.22512 0.98203 0.97228 0.88139 1.60240 1.53011 1.05701 1.01386 1.23222 0.92030 0.92695 0.99868 1.21704 0.99218 0.95525 0.98043 1.20875 0.96791 1.00380 0.96043 1.19670 0.92248 0.93607 0.92391 1.20650 0.99888 0.95931 0.96752 1.20858 0.96412 0.99420 0.94344 1.20899 0.95610 0.97482 1.01373 1.20236 0.90786 0.98423 0.93513 1.98354 1.39789 1.92071 1.74818 0.93797 0.92776 0.94078 0.96878 0.96520 0.93127 0.90946 0.94057 0.88716 0.89469 0.89546 0.89651 0.85074 0.84774 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.86 37.16 0.33 -2.02 16 2 C -0.08 -1.57 2.37 -90.62 -0.21 -1.79 16 3 H 0.06 1.14 6.92 -51.93 -0.36 0.78 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 5 C -0.51 -14.10 8.47 -34.44 -0.29 -14.40 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.06 1.08 4.14 -3.83 -0.02 1.07 16 14 N -0.49 -7.27 4.32 -169.02 -0.73 -8.00 16 15 C 0.05 0.63 6.68 -2.43 -0.02 0.62 16 16 C -0.11 -1.29 6.70 -26.61 -0.18 -1.47 16 17 C -0.14 -1.82 6.11 -104.01 -0.64 -2.45 16 18 C 0.12 1.66 5.49 -83.41 -0.46 1.20 16 19 C -0.11 -1.38 10.05 -39.26 -0.39 -1.77 16 20 C -0.09 -0.94 10.02 -39.68 -0.40 -1.34 16 21 C -0.13 -1.43 9.84 -39.50 -0.39 -1.82 16 22 C 0.00 -0.03 6.31 -39.59 -0.25 -0.28 16 23 Cl -0.08 -0.88 28.78 -51.86 -1.49 -2.38 16 24 H 0.04 0.75 7.57 -51.93 -0.39 0.35 16 25 H 0.05 1.09 7.11 -51.93 -0.37 0.72 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 30 H 0.07 1.26 7.96 -51.93 -0.41 0.84 16 31 H 0.04 0.72 7.94 -51.93 -0.41 0.31 16 32 H 0.09 1.26 6.67 -51.93 -0.35 0.91 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 324.75 15.07 4.89 4.89 Total: -1.00 -29.55 324.75 -10.35 -39.90 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -5.61 Total: -2.48 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -3.13 Total: -22.43 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.01 Total: -33.98 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.49 Total: -2.38 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.55 -10.35 -39.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180750148.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.748 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds