Wall clock time and date at job start Fri Apr 10 2020 17:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46950 * 2 1 4 4 C 1.52998 * 109.47374 * 240.00000 * 2 1 3 5 5 C 1.50698 * 109.46753 * 64.99517 * 4 2 1 6 6 H 1.07996 * 120.00381 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99953 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99880 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00152 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47065 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46697 * 120.00340 * 9 7 5 12 12 H 1.48494 * 109.47346 * 240.00278 * 9 7 5 13 13 C 1.52999 * 109.47383 * 119.99720 * 2 1 3 14 14 N 1.46897 * 109.47238 * 296.17250 * 13 2 1 15 15 C 1.47910 * 111.00060 * 284.16554 * 14 13 2 16 16 C 1.54601 * 102.62524 * 265.48980 * 15 14 13 17 17 C 1.51570 * 102.83798 * 334.46259 * 16 15 14 18 18 C 1.38979 * 107.95450 * 15.93503 * 17 16 15 19 19 C 1.39374 * 119.10080 * 180.77280 * 18 17 16 20 20 C 1.37957 * 120.22438 * 359.71921 * 19 18 17 21 21 C 1.38244 * 120.27836 * 359.97438 * 20 19 18 22 22 C 1.37992 * 131.57186 * 196.32449 * 17 16 15 23 23 Cl 1.73604 * 119.97100 * 359.28722 * 22 17 16 24 24 H 1.08998 * 109.47369 * 294.73648 * 1 2 3 25 25 H 1.08991 * 109.47466 * 54.74405 * 1 2 3 26 26 H 1.09005 * 109.46937 * 174.74150 * 1 2 3 27 27 H 1.08996 * 109.47386 * 184.99643 * 4 2 1 28 28 H 1.08995 * 109.46876 * 305.00222 * 4 2 1 29 29 H 0.96997 * 120.00398 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.47132 * 56.17064 * 13 2 1 31 31 H 1.08999 * 109.47381 * 176.16801 * 13 2 1 32 32 H 1.08997 * 110.77431 * 23.77894 * 15 14 13 33 33 H 1.09002 * 110.77492 * 147.20250 * 15 14 13 34 34 H 1.09003 * 110.73642 * 216.12569 * 16 15 14 35 35 H 1.08994 * 110.89663 * 92.87576 * 16 15 14 36 36 H 1.07995 * 119.88654 * 179.69985 * 19 18 17 37 37 H 1.07995 * 119.86253 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.06778 * 180.16024 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4765 6 1 1.0805 0.9745 -2.3756 7 6 1.9932 -0.4016 -3.7282 8 7 2.6765 -1.5186 -3.8511 9 14 1.4983 0.5627 -5.2496 10 1 0.7409 1.7736 -4.8434 11 1 2.7162 0.9683 -5.9963 12 1 0.6450 -0.2871 -6.1185 13 6 2.0401 -0.7212 1.2492 14 7 1.6274 0.0227 2.4469 15 6 2.4583 1.2322 2.6321 16 6 3.5587 0.7412 3.6006 17 6 2.8830 -0.4065 4.3241 18 6 1.7548 -0.7667 3.5967 19 6 0.9453 -1.7986 4.0680 20 6 1.2670 -2.4544 5.2383 21 6 2.3947 -2.0937 5.9521 22 6 3.2026 -1.0674 5.4925 23 17 4.6189 -0.6117 6.3871 24 1 -0.3634 0.4300 0.9333 25 1 -0.3634 0.5931 -0.8391 26 1 -0.3633 -1.0234 -0.0942 27 1 3.1263 -0.7994 -1.2056 28 1 1.6054 -1.7197 -1.2951 29 1 2.9238 -1.8416 -4.7317 30 1 1.6218 -1.7271 1.2843 31 1 3.1279 -0.7810 1.2156 32 1 2.8916 1.5524 1.6846 33 1 1.8762 2.0357 3.0834 34 1 3.8361 1.5291 4.3009 35 1 4.4321 0.3903 3.0510 36 1 0.0629 -2.0856 3.5154 37 1 0.6353 -3.2529 5.5984 38 1 2.6447 -2.6111 6.8664 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180750148.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:37 Heat of formation + Delta-G solvation = -0.672476 kcal Electronic energy + Delta-G solvation = -19249.305777 eV Core-core repulsion = 16309.222866 eV Total energy + Delta-G solvation = -2940.082911 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.86881 -38.57191 -37.34122 -36.50141 -34.37899 -32.74990 -30.58227 -29.84156 -28.72602 -27.06164 -24.90569 -24.09025 -22.42750 -22.11784 -20.39636 -18.59216 -17.78473 -17.30790 -16.63020 -16.52847 -16.36868 -15.43856 -15.34376 -15.07521 -14.60814 -14.34242 -14.13481 -13.86851 -13.47007 -13.28464 -13.08487 -12.88364 -12.76042 -12.60234 -12.53422 -12.25526 -12.21954 -12.09418 -12.00500 -11.88474 -11.47667 -11.09055 -11.05430 -10.53509 -10.36132 -9.66562 -8.92965 -8.17036 -6.25977 0.16303 0.22192 1.13446 1.40540 1.41436 1.54102 2.41671 2.51162 2.72961 3.16888 3.52053 3.73680 3.96858 4.01442 4.10853 4.27413 4.30817 4.40978 4.44752 4.48695 4.57352 4.71799 4.79722 4.87024 4.90054 4.98933 5.05634 5.19016 5.25935 5.32307 5.37908 5.46323 5.50022 5.54983 5.63895 5.79809 5.88512 5.91277 6.22299 6.31533 6.90122 7.42551 8.95239 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031564 B = 0.003577 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.867943 B = 7825.952844 C = 8075.500716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.069 4.069 3 H 0.058 0.942 4 C 0.033 3.967 5 C -0.526 4.526 6 H 0.062 0.938 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.079 3.921 14 N -0.490 5.490 15 C 0.047 3.953 16 C -0.102 4.102 17 C -0.148 4.148 18 C 0.089 3.911 19 C -0.120 4.120 20 C -0.085 4.085 21 C -0.128 4.128 22 C -0.016 4.016 23 Cl -0.073 7.073 24 H 0.066 0.934 25 H 0.039 0.961 26 H 0.035 0.965 27 H -0.014 1.014 28 H -0.010 1.010 29 H 0.261 0.739 30 H 0.066 0.934 31 H 0.030 0.970 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.136 0.864 37 H 0.168 0.832 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.858 1.296 21.374 21.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 H 0.076 0.924 4 C -0.005 4.005 5 C -0.564 4.564 6 H 0.080 0.920 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.206 1.206 13 C -0.046 4.046 14 N -0.207 5.207 15 C -0.080 4.080 16 C -0.140 4.140 17 C -0.152 4.152 18 C -0.008 4.008 19 C -0.140 4.140 20 C -0.103 4.103 21 C -0.147 4.147 22 C -0.043 4.043 23 Cl -0.044 7.044 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.004 0.996 28 H 0.009 0.991 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.154 0.846 37 H 0.185 0.815 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.198 1.407 21.182 21.263 hybrid contribution 1.001 0.013 -1.039 1.443 sum -0.197 1.420 20.143 20.194 Atomic orbital electron populations 1.21481 0.94588 1.00383 1.00629 1.21019 0.96805 0.98566 0.92369 0.92356 1.19012 0.94124 0.94707 0.92614 1.21645 1.34289 1.08547 0.91940 0.92012 1.25930 0.95260 0.96063 1.02600 1.70105 1.40376 1.22968 1.24201 0.85474 0.78049 0.78942 0.79069 1.18504 1.20621 1.20615 1.22146 0.97276 0.96791 0.88421 1.60188 1.53509 1.06041 1.00942 1.23288 0.92398 0.92414 0.99888 1.21664 0.98560 0.95807 0.97983 1.20998 0.96832 1.00791 0.96563 1.19822 0.93599 0.94993 0.92371 1.20921 0.99910 0.95574 0.97555 1.21236 0.96422 0.99449 0.93209 1.21285 0.94984 0.96547 1.01914 1.20440 0.91404 0.98927 0.93520 1.98354 1.39469 1.92097 1.74509 0.91540 0.94148 0.94584 0.99557 0.99120 0.92974 0.91558 0.95154 0.89480 0.88028 0.88036 0.90343 0.84609 0.81473 0.82522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.26 8.86 71.98 0.64 -3.63 16 2 C -0.07 -2.76 2.37 -10.79 -0.03 -2.79 16 3 H 0.06 2.33 6.92 -2.38 -0.02 2.32 16 4 C 0.03 1.72 4.45 29.85 0.13 1.85 16 5 C -0.53 -29.45 8.47 25.60 0.22 -29.23 16 6 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 7 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 8 N -0.94 -56.97 13.29 21.45 0.28 -56.69 16 9 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 13 C 0.08 2.74 4.14 86.30 0.36 3.10 16 14 N -0.49 -14.38 4.32 -688.65 -2.97 -17.35 16 15 C 0.05 1.18 6.68 86.65 0.58 1.76 16 16 C -0.10 -2.40 6.70 30.67 0.21 -2.20 16 17 C -0.15 -3.76 6.11 -19.47 -0.12 -3.88 16 18 C 0.09 2.41 5.49 38.28 0.21 2.62 16 19 C -0.12 -2.75 10.05 22.48 0.23 -2.52 16 20 C -0.08 -1.50 10.02 22.20 0.22 -1.28 16 21 C -0.13 -2.38 9.84 22.33 0.22 -2.16 16 22 C -0.02 -0.36 6.31 22.27 0.14 -0.22 16 23 Cl -0.07 -1.51 28.78 -2.72 -0.08 -1.59 16 24 H 0.07 2.19 7.57 -2.39 -0.02 2.17 16 25 H 0.04 1.60 7.11 -2.39 -0.02 1.58 16 26 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 27 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 28 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 30 H 0.07 2.35 7.96 -2.39 -0.02 2.33 16 31 H 0.03 1.10 7.94 -2.39 -0.02 1.08 16 32 H 0.09 2.31 6.67 -2.39 -0.02 2.30 16 33 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 37 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -63.79 324.75 3.76 -60.02 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 1.04 Total: 7.53 kcal Atomic # 6 Polarization: -41.66 SS G_CDS: 3.47 Total: -38.20 kcal Atomic # 7 Polarization: -71.35 SS G_CDS: -2.69 Total: -74.04 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.59 kcal Total: -63.79 3.76 -60.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180750148.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.349 kcal (2) G-P(sol) polarization free energy of solvation -63.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds