Wall clock time and date at job start Fri Apr 10 2020 17:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 119.99582 * 2 1 4 4 C 1.39915 * 120.00213 * 180.02562 * 2 1 3 5 5 C 1.38881 * 120.00189 * 179.72750 * 4 2 1 6 6 C 1.38064 * 119.99905 * 179.71413 * 5 4 2 7 7 C 1.38871 * 119.99767 * 0.56005 * 6 5 4 8 8 N 1.40097 * 119.99591 * 179.70046 * 7 6 5 9 9 C 1.34775 * 120.00082 * 314.97558 * 8 7 6 10 10 S 1.71202 * 120.00032 * 3.76261 * 9 8 7 11 11 N 1.34780 * 120.00279 * 183.76022 * 9 8 7 12 12 C 1.46500 * 119.99943 * 0.02562 * 11 9 8 13 13 C 1.37046 * 119.99715 * 180.02562 * 11 9 8 14 14 H 1.07993 * 120.00420 * 321.55030 * 13 11 9 15 15 C 1.38882 * 119.99633 * 141.55621 * 13 11 9 16 16 N 1.31477 * 120.00006 * 161.65752 * 15 13 11 17 17 Si 1.86804 * 120.00147 * 341.65664 * 15 13 11 18 18 H 1.48502 * 109.47158 * 93.45505 * 17 15 13 19 19 H 1.48496 * 109.47163 * 213.45561 * 17 15 13 20 20 H 1.48499 * 109.46892 * 333.45634 * 17 15 13 21 21 C 1.38860 * 120.00537 * 359.71277 * 7 6 5 22 22 C 1.38068 * 120.00338 * 0.02562 * 21 7 6 23 23 H 1.09001 * 109.47350 * 269.99937 * 1 2 3 24 24 H 1.08997 * 109.47378 * 30.00118 * 1 2 3 25 25 H 1.08999 * 109.47186 * 149.99782 * 1 2 3 26 26 H 1.08994 * 109.47149 * 269.99809 * 3 2 1 27 27 H 1.09001 * 109.47285 * 30.00372 * 3 2 1 28 28 H 1.09008 * 109.46823 * 150.00264 * 3 2 1 29 29 H 1.08004 * 120.00275 * 359.96857 * 5 4 2 30 30 H 1.08000 * 120.00609 * 180.27050 * 6 5 4 31 31 H 0.97001 * 120.00374 * 134.98063 * 8 7 6 32 32 H 1.09000 * 109.46862 * 87.63554 * 12 11 9 33 33 H 1.08998 * 109.46896 * 207.62881 * 12 11 9 34 34 H 1.08999 * 109.46900 * 327.63046 * 12 11 9 35 35 H 0.97005 * 120.00046 * 179.97438 * 16 15 13 36 36 H 1.08004 * 120.00217 * 179.97438 * 21 7 6 37 37 H 1.08001 * 120.00008 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1646 -1.2117 -0.0005 5 6 3.5534 -1.2117 -0.0063 6 6 4.2437 -2.4073 -0.0008 7 6 3.5493 -3.6100 -0.0014 8 7 4.2499 -4.8232 -0.0022 9 6 5.3011 -4.9938 -0.8282 10 16 5.8405 -3.6965 -1.8065 11 7 5.9279 -6.1857 -0.8840 12 6 5.4661 -7.2960 -0.0473 13 6 6.9972 -6.3589 -1.7236 14 1 6.9949 -5.9023 -2.7022 15 6 8.0837 -7.1217 -1.3158 16 7 8.9290 -7.5909 -2.2068 17 14 8.3442 -7.4813 0.4988 18 1 7.7128 -8.7809 0.8415 19 1 9.7995 -7.5468 0.7864 20 1 7.7272 -6.4018 1.3107 21 6 2.1607 -3.6101 -0.0014 22 6 1.4702 -2.4144 -0.0014 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 2.3791 1.5834 -1.0276 27 1 1.6083 2.0284 0.5139 28 1 3.1499 1.1385 0.5138 29 1 4.0934 -0.2764 -0.0108 30 1 5.3237 -2.4074 -0.0009 31 1 3.9783 -5.5405 0.5916 32 1 4.6850 -7.8460 -0.5722 33 1 6.3014 -7.9637 0.1638 34 1 5.0684 -6.9044 0.8890 35 1 9.6881 -8.1235 -1.9219 36 1 1.6208 -4.5454 -0.0023 37 1 0.3902 -2.4146 -0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198745801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:54 Heat of formation + Delta-G solvation = 86.196434 kcal Electronic energy + Delta-G solvation = -19202.558784 eV Core-core repulsion = 16300.579250 eV Total energy + Delta-G solvation = -2901.979535 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.65900 -38.45758 -36.49945 -34.16297 -32.35449 -30.82564 -28.79321 -28.10212 -27.72725 -25.71829 -23.95163 -22.45088 -21.09953 -20.30936 -18.44522 -17.55938 -17.13333 -16.29631 -15.81064 -15.48548 -14.99474 -14.53494 -14.37167 -13.95855 -13.54070 -13.21343 -13.14741 -13.00881 -12.68884 -12.50875 -12.22993 -12.10426 -11.92818 -11.83877 -11.63572 -11.12500 -10.70195 -10.55417 -10.18954 -10.01765 -9.62551 -9.22867 -8.50644 -8.40904 -6.95747 -6.80297 -6.55775 -5.80870 -4.33408 1.81000 1.97531 2.55829 2.82751 3.00831 3.05324 3.18760 3.27702 3.78442 3.91667 4.21548 4.35769 4.70608 4.99772 5.04435 5.21823 5.23902 5.32816 5.39541 5.56623 5.58624 5.63236 5.68664 5.81582 5.86823 5.95146 6.01430 6.42510 6.51293 6.62077 6.81000 7.07600 7.17155 7.40122 7.46515 7.54808 7.81682 8.13533 8.30235 8.77392 8.90094 10.29725 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037372 B = 0.004223 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.038001 B = 6628.715373 C = 6911.316002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.645 5.645 3 C 0.097 3.903 4 C 0.202 3.798 5 C -0.192 4.192 6 C -0.019 4.019 7 C 0.100 3.900 8 N -0.659 5.659 9 C 0.475 3.525 10 S -0.701 6.701 11 N -0.388 5.388 12 C 0.038 3.962 13 C -0.298 4.298 14 H 0.137 0.863 15 C 0.069 3.931 16 N -0.830 5.830 17 Si 0.883 3.117 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.261 1.261 21 C -0.091 4.091 22 C -0.200 4.200 23 H 0.042 0.958 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.119 0.881 30 H 0.150 0.850 31 H 0.390 0.610 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.284 0.716 36 H 0.114 0.886 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.318 7.069 9.505 18.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.359 5.359 3 C -0.047 4.047 4 C 0.103 3.897 5 C -0.217 4.217 6 C -0.043 4.043 7 C 0.004 3.996 8 N -0.290 5.290 9 C 0.119 3.881 10 S -0.565 6.565 11 N -0.076 5.076 12 C -0.108 4.108 13 C -0.430 4.430 14 H 0.154 0.846 15 C -0.143 4.143 16 N -0.461 5.461 17 Si 0.710 3.290 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.185 1.185 21 C -0.113 4.113 22 C -0.224 4.224 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.137 0.863 30 H 0.168 0.832 31 H 0.228 0.772 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.132 0.868 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.707 7.769 8.710 18.003 hybrid contribution -0.227 -1.413 1.507 2.078 sum -13.934 6.356 10.217 18.411 Atomic orbital electron populations 1.21525 0.80229 1.02236 1.00537 1.46241 1.04476 1.03203 1.81966 1.21557 0.97236 0.84925 1.00934 1.17811 0.91243 0.85201 0.95487 1.20472 0.91463 0.98262 1.11484 1.21476 1.01985 0.89911 0.90972 1.17166 0.89780 0.84943 1.07701 1.41856 1.31627 1.15651 1.39893 1.21948 0.87861 0.88120 0.90213 1.92486 1.78105 1.31212 1.54695 1.43057 1.26464 1.04780 1.33342 1.22417 1.01704 0.91687 0.94966 1.19577 0.93948 1.31321 0.98124 0.84555 1.25428 0.95172 0.95012 0.98653 1.69698 1.13452 1.28703 1.34297 0.86866 0.78712 0.78659 0.84743 1.19768 1.20386 1.18532 1.20595 0.92254 0.97499 1.00974 1.20189 0.98694 0.90545 1.12929 0.93984 0.92135 0.91481 0.93721 0.92192 0.91232 0.86285 0.83213 0.77209 0.90870 0.90086 0.91946 0.90563 0.86763 0.86532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.89 10.19 59.85 0.61 1.50 16 2 N -0.64 -7.78 3.42 -187.49 -0.64 -8.42 16 3 C 0.10 0.95 10.18 59.85 0.61 1.56 16 4 C 0.20 3.00 6.56 -83.69 -0.55 2.45 16 5 C -0.19 -3.15 9.20 -39.41 -0.36 -3.51 16 6 C -0.02 -0.36 7.86 -39.41 -0.31 -0.67 16 7 C 0.10 1.81 5.94 -83.61 -0.50 1.31 16 8 N -0.66 -12.30 5.20 -11.36 -0.06 -12.36 16 9 C 0.47 11.00 7.52 -86.92 -0.65 10.35 16 10 S -0.70 -18.86 24.60 -107.50 -2.64 -21.50 16 11 N -0.39 -8.91 2.58 -124.14 -0.32 -9.23 16 12 C 0.04 0.68 8.86 59.85 0.53 1.21 16 13 C -0.30 -7.97 9.00 -14.98 -0.13 -8.10 16 14 H 0.14 4.18 7.35 -52.49 -0.39 3.80 16 15 C 0.07 1.78 5.35 -17.47 -0.09 1.69 16 16 N -0.83 -22.31 13.96 55.49 0.77 -21.53 16 17 Si 0.88 18.87 24.87 -169.99 -4.23 14.65 16 18 H -0.27 -5.23 6.64 56.52 0.38 -4.86 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 20 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 21 C -0.09 -1.40 9.96 -39.41 -0.39 -1.80 16 22 C -0.20 -2.85 9.20 -39.41 -0.36 -3.22 16 23 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 25 H 0.07 0.60 6.19 -51.93 -0.32 0.28 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.45 8.07 -51.93 -0.42 0.03 16 28 H 0.07 0.69 6.21 -51.92 -0.32 0.37 16 29 H 0.12 1.76 6.14 -52.48 -0.32 1.44 16 30 H 0.15 3.22 6.08 -44.00 -0.27 2.96 16 31 H 0.39 5.94 6.57 -40.82 -0.27 5.67 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.49 3.14 -51.93 -0.16 1.33 16 34 H 0.06 0.90 6.44 -51.93 -0.33 0.56 16 35 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 37 H 0.12 1.38 6.14 -52.49 -0.32 1.05 16 LS Contribution 306.51 15.07 4.62 4.62 Total: -1.00 -32.37 306.51 -8.50 -40.87 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -4.40 Total: 10.13 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.61 Total: 2.78 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.24 Total: -51.55 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -4.23 Total: 14.65 kcal Atomic # 16 Polarization: -18.86 SS G_CDS: -2.64 Total: -21.50 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.37 -8.50 -40.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198745801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.070 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds