Wall clock time and date at job start Fri Apr 10 2020 17:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 119.99582 * 2 1 4 4 C 1.39915 * 120.00213 * 180.02562 * 2 1 3 5 5 C 1.38881 * 120.00189 * 179.72750 * 4 2 1 6 6 C 1.38064 * 119.99905 * 179.71413 * 5 4 2 7 7 C 1.38871 * 119.99767 * 0.56005 * 6 5 4 8 8 N 1.40097 * 119.99591 * 179.70046 * 7 6 5 9 9 C 1.34775 * 120.00082 * 314.97558 * 8 7 6 10 10 S 1.71202 * 120.00032 * 3.76261 * 9 8 7 11 11 N 1.34780 * 120.00279 * 183.76022 * 9 8 7 12 12 C 1.46500 * 119.99943 * 0.02562 * 11 9 8 13 13 C 1.37046 * 119.99715 * 180.02562 * 11 9 8 14 14 H 1.07993 * 120.00420 * 321.55030 * 13 11 9 15 15 C 1.38882 * 119.99633 * 141.55621 * 13 11 9 16 16 N 1.31477 * 120.00006 * 161.65752 * 15 13 11 17 17 Si 1.86804 * 120.00147 * 341.65664 * 15 13 11 18 18 H 1.48502 * 109.47158 * 93.45505 * 17 15 13 19 19 H 1.48496 * 109.47163 * 213.45561 * 17 15 13 20 20 H 1.48499 * 109.46892 * 333.45634 * 17 15 13 21 21 C 1.38860 * 120.00537 * 359.71277 * 7 6 5 22 22 C 1.38068 * 120.00338 * 0.02562 * 21 7 6 23 23 H 1.09001 * 109.47350 * 269.99937 * 1 2 3 24 24 H 1.08997 * 109.47378 * 30.00118 * 1 2 3 25 25 H 1.08999 * 109.47186 * 149.99782 * 1 2 3 26 26 H 1.08994 * 109.47149 * 269.99809 * 3 2 1 27 27 H 1.09001 * 109.47285 * 30.00372 * 3 2 1 28 28 H 1.09008 * 109.46823 * 150.00264 * 3 2 1 29 29 H 1.08004 * 120.00275 * 359.96857 * 5 4 2 30 30 H 1.08000 * 120.00609 * 180.27050 * 6 5 4 31 31 H 0.97001 * 120.00374 * 134.98063 * 8 7 6 32 32 H 1.09000 * 109.46862 * 87.63554 * 12 11 9 33 33 H 1.08998 * 109.46896 * 207.62881 * 12 11 9 34 34 H 1.08999 * 109.46900 * 327.63046 * 12 11 9 35 35 H 0.97005 * 120.00046 * 179.97438 * 16 15 13 36 36 H 1.08004 * 120.00217 * 179.97438 * 21 7 6 37 37 H 1.08001 * 120.00008 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1646 -1.2117 -0.0005 5 6 3.5534 -1.2117 -0.0063 6 6 4.2437 -2.4073 -0.0008 7 6 3.5493 -3.6100 -0.0014 8 7 4.2499 -4.8232 -0.0022 9 6 5.3011 -4.9938 -0.8282 10 16 5.8405 -3.6965 -1.8065 11 7 5.9279 -6.1857 -0.8840 12 6 5.4661 -7.2960 -0.0473 13 6 6.9972 -6.3589 -1.7236 14 1 6.9949 -5.9023 -2.7022 15 6 8.0837 -7.1217 -1.3158 16 7 8.9290 -7.5909 -2.2068 17 14 8.3442 -7.4813 0.4988 18 1 7.7128 -8.7809 0.8415 19 1 9.7995 -7.5468 0.7864 20 1 7.7272 -6.4018 1.3107 21 6 2.1607 -3.6101 -0.0014 22 6 1.4702 -2.4144 -0.0014 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 2.3791 1.5834 -1.0276 27 1 1.6083 2.0284 0.5139 28 1 3.1499 1.1385 0.5138 29 1 4.0934 -0.2764 -0.0108 30 1 5.3237 -2.4074 -0.0009 31 1 3.9783 -5.5405 0.5916 32 1 4.6850 -7.8460 -0.5722 33 1 6.3014 -7.9637 0.1638 34 1 5.0684 -6.9044 0.8890 35 1 9.6881 -8.1235 -1.9219 36 1 1.6208 -4.5454 -0.0023 37 1 0.3902 -2.4146 -0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198745801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:54 Heat of formation + Delta-G solvation = 65.473056 kcal Electronic energy + Delta-G solvation = -19203.457417 eV Core-core repulsion = 16300.579250 eV Total energy + Delta-G solvation = -2902.878168 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.06651 -39.93652 -37.79033 -35.59997 -34.18499 -32.02331 -30.09160 -29.28423 -28.91863 -27.42128 -25.13631 -23.86319 -22.54222 -21.64911 -20.16408 -19.19546 -18.48795 -17.86835 -17.29452 -16.61615 -16.22443 -15.92506 -15.82653 -15.28995 -14.90341 -14.78304 -14.68054 -14.37174 -13.89545 -13.72031 -13.44149 -13.20484 -13.08530 -12.81477 -12.77539 -12.75693 -12.44704 -12.01897 -11.95210 -11.63171 -11.18472 -10.75833 -9.95745 -9.78817 -8.74412 -8.69689 -8.13741 -7.70022 -6.36386 0.36548 0.69228 0.95617 1.13595 1.33874 1.35810 1.43231 1.99952 2.14808 2.36125 2.63988 2.81219 3.08528 3.90304 4.03161 4.15811 4.22519 4.31604 4.47121 4.49887 4.53405 4.62241 4.69590 4.78480 4.88234 4.94116 4.96896 5.07374 5.28240 5.32659 5.43704 5.55449 5.79110 5.82248 6.07218 6.26563 6.47621 6.55458 6.67170 6.88932 6.92448 8.41606 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037372 B = 0.004223 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.038001 B = 6628.715373 C = 6911.316002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.646 5.646 3 C 0.090 3.910 4 C 0.208 3.792 5 C -0.206 4.206 6 C -0.037 4.037 7 C 0.061 3.939 8 N -0.631 5.631 9 C 0.497 3.503 10 S -0.793 6.793 11 N -0.393 5.393 12 C 0.030 3.970 13 C -0.321 4.321 14 H 0.077 0.923 15 C 0.028 3.972 16 N -0.878 5.878 17 Si 0.953 3.047 18 H -0.225 1.225 19 H -0.283 1.283 20 H -0.264 1.264 21 C -0.077 4.077 22 C -0.197 4.197 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.412 0.588 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.291 0.709 36 H 0.144 0.856 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.820 6.536 12.452 22.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.359 5.359 3 C -0.053 4.053 4 C 0.106 3.894 5 C -0.231 4.231 6 C -0.061 4.061 7 C -0.034 4.034 8 N -0.264 5.264 9 C 0.136 3.864 10 S -0.660 6.660 11 N -0.082 5.082 12 C -0.114 4.114 13 C -0.452 4.452 14 H 0.095 0.905 15 C -0.180 4.180 16 N -0.511 5.511 17 Si 0.775 3.225 18 H -0.149 1.149 19 H -0.209 1.209 20 H -0.188 1.188 21 C -0.098 4.098 22 C -0.221 4.221 23 H 0.075 0.925 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.142 0.858 30 H 0.130 0.870 31 H 0.254 0.746 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.162 0.838 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -17.303 7.240 11.699 22.106 hybrid contribution 0.660 -1.025 0.586 1.353 sum -16.643 6.215 12.285 21.599 Atomic orbital electron populations 1.21774 0.78055 1.03482 1.01857 1.46575 1.05963 1.02779 1.80546 1.21718 0.97532 0.84777 1.01270 1.17966 0.90736 0.86909 0.93834 1.20522 0.92695 0.97646 1.12216 1.21216 1.00416 0.91679 0.92816 1.17400 0.91037 0.84104 1.10842 1.41655 1.29773 1.16593 1.38365 1.21501 0.88414 0.87076 0.89364 1.92657 1.80628 1.34518 1.58192 1.43066 1.25730 1.05799 1.33645 1.22750 1.02441 0.90190 0.96018 1.19019 0.96716 1.32321 0.97169 0.90521 1.26202 0.93986 0.94178 1.03660 1.69794 1.14383 1.30009 1.36897 0.85809 0.78546 0.80362 0.77805 1.14895 1.20903 1.18814 1.20871 0.90800 0.99326 0.98831 1.20586 1.00314 0.89743 1.11442 0.92479 0.90148 0.91103 0.93787 0.89298 0.91861 0.85849 0.86951 0.74646 0.88039 0.90318 0.88001 0.89880 0.83781 0.83218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.26 10.19 127.77 1.30 2.56 16 2 N -0.65 -13.69 3.42 -747.09 -2.55 -16.24 16 3 C 0.09 1.57 10.18 127.77 1.30 2.87 16 4 C 0.21 5.73 6.56 38.16 0.25 5.98 16 5 C -0.21 -6.80 9.20 22.38 0.21 -6.59 16 6 C -0.04 -1.45 7.86 22.38 0.18 -1.27 16 7 C 0.06 2.16 5.94 38.12 0.23 2.39 16 8 N -0.63 -22.69 5.20 -189.85 -0.99 -23.68 16 9 C 0.50 23.32 7.52 179.05 1.35 24.67 16 10 S -0.79 -45.33 24.60 -56.49 -1.39 -46.72 16 11 N -0.39 -18.06 2.58 -546.68 -1.41 -19.47 16 12 C 0.03 0.96 8.86 127.77 1.13 2.09 16 13 C -0.32 -17.88 9.00 84.03 0.76 -17.13 16 14 H 0.08 5.12 7.35 -2.91 -0.02 5.10 16 15 C 0.03 1.46 5.35 84.90 0.45 1.91 16 16 N -0.88 -48.96 13.96 21.65 0.30 -48.66 16 17 Si 0.95 38.13 24.87 68.60 1.71 39.84 16 18 H -0.22 -7.37 6.64 99.48 0.66 -6.71 16 19 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 21 C -0.08 -2.13 9.96 22.38 0.22 -1.91 16 22 C -0.20 -4.95 9.20 22.38 0.21 -4.74 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.08 0.83 8.07 -2.39 -0.02 0.82 16 25 H 0.07 0.95 6.19 -2.39 -0.01 0.93 16 26 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.09 1.05 8.07 -2.39 -0.02 1.03 16 28 H 0.06 1.19 6.21 -2.38 -0.01 1.17 16 29 H 0.12 3.78 6.14 -2.91 -0.02 3.76 16 30 H 0.11 5.20 6.08 -8.31 -0.05 5.15 16 31 H 0.41 11.11 6.57 -92.71 -0.61 10.50 16 32 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.08 2.59 3.14 -2.39 -0.01 2.59 16 34 H 0.10 2.43 6.44 -2.39 -0.02 2.42 16 35 H 0.29 14.64 8.31 -92.70 -0.77 13.87 16 36 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 37 H 0.15 2.76 6.14 -2.91 -0.02 2.75 16 Total: -1.00 -77.87 306.51 3.67 -74.21 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.41 Total: 29.90 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 7.58 Total: 10.82 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -4.65 Total: -108.04 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 1.71 Total: 39.84 kcal Atomic # 16 Polarization: -45.33 SS G_CDS: -1.39 Total: -46.72 kcal Total: -77.87 3.67 -74.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198745801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.678 kcal (2) G-P(sol) polarization free energy of solvation -77.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds