Wall clock time and date at job start Fri Apr 10 2020 17:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47024 * 2 1 4 4 C 1.52998 * 109.47363 * 240.00035 * 2 1 3 5 5 C 1.50703 * 109.47147 * 64.99577 * 4 2 1 6 6 H 1.07995 * 120.00013 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99685 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00446 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99646 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47209 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46956 * 120.00059 * 9 7 5 12 12 H 1.48499 * 109.47265 * 240.00153 * 9 7 5 13 13 C 1.52997 * 109.47387 * 119.99558 * 2 1 3 14 14 N 1.46906 * 109.47433 * 295.33172 * 13 2 1 15 15 C 1.47901 * 110.99890 * 294.39493 * 14 13 2 16 16 C 1.54600 * 102.79804 * 210.98379 * 15 14 13 17 17 C 1.51583 * 102.82978 * 25.44880 * 16 15 14 18 18 C 1.37932 * 131.54323 * 164.01248 * 17 16 15 19 19 C 1.38269 * 120.10009 * 180.28646 * 18 17 16 20 20 C 1.38432 * 119.86765 * 359.97438 * 19 18 17 21 21 Cl 1.73598 * 119.87902 * 179.89942 * 20 19 18 22 22 C 1.38019 * 120.23777 * 359.87936 * 20 19 18 23 23 C 1.38973 * 107.95209 * 344.04029 * 17 16 15 24 24 H 1.08995 * 109.47403 * 304.82082 * 1 2 3 25 25 H 1.09000 * 109.47380 * 64.82492 * 1 2 3 26 26 H 1.09000 * 109.46560 * 184.82261 * 1 2 3 27 27 H 1.09001 * 109.47266 * 184.99821 * 4 2 1 28 28 H 1.08995 * 109.46975 * 304.99927 * 4 2 1 29 29 H 0.96998 * 119.99929 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47519 * 175.33227 * 13 2 1 31 31 H 1.09003 * 109.47046 * 55.33219 * 13 2 1 32 32 H 1.09005 * 110.78415 * 92.60579 * 15 14 13 33 33 H 1.09003 * 110.77929 * 329.36230 * 15 14 13 34 34 H 1.09006 * 110.73676 * 143.78096 * 16 15 14 35 35 H 1.09000 * 110.74057 * 267.11000 * 16 15 14 36 36 H 1.08003 * 119.94624 * 0.25695 * 18 17 16 37 37 H 1.07999 * 120.06789 * 179.97438 * 19 18 17 38 38 H 1.08005 * 119.90803 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5193 -3.8511 9 14 1.4975 0.5620 -5.2497 10 1 0.7411 1.7736 -4.8435 11 1 2.7153 0.9667 -5.9970 12 1 0.6432 -0.2874 -6.1180 13 6 2.0400 -0.7211 1.2492 14 7 1.6446 0.0334 2.4461 15 6 2.3176 1.3498 2.4891 16 6 2.4654 1.6095 4.0059 17 6 2.4694 0.2099 4.5882 18 6 2.8515 -0.2650 5.8255 19 6 2.7597 -1.6152 6.1087 20 6 2.2829 -2.4902 5.1478 21 17 2.1700 -4.1859 5.5020 22 6 1.8965 -2.0193 3.9093 23 6 1.9848 -0.6591 3.6179 24 1 -0.3634 0.5868 0.8436 25 1 -0.3634 0.4371 -0.9300 26 1 -0.3632 -1.0241 0.0864 27 1 3.1263 -0.7994 -1.2056 28 1 1.6054 -1.7197 -1.2951 29 1 2.9222 -1.8426 -4.7318 30 1 3.1268 -0.7941 1.2084 31 1 1.6100 -1.7218 1.2921 32 1 1.6977 2.1165 2.0241 33 1 3.2946 1.3005 2.0082 34 1 3.4046 2.1195 4.2205 35 1 1.6186 2.1824 4.3838 36 1 3.2234 0.4189 6.5742 37 1 3.0594 -1.9865 7.0775 38 1 1.5256 -2.7067 3.1634 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205353699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:01 Heat of formation + Delta-G solvation = 9.943314 kcal Electronic energy + Delta-G solvation = -19151.082799 eV Core-core repulsion = 16211.460223 eV Total energy + Delta-G solvation = -2939.622576 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.77486 -37.54729 -36.33521 -34.90650 -32.71704 -31.78996 -29.55159 -28.76732 -26.86507 -25.57652 -23.18345 -23.02216 -21.47869 -20.99233 -18.82488 -16.97947 -16.48731 -16.01001 -15.61153 -15.51725 -14.57035 -14.31186 -14.01371 -13.82148 -13.46491 -13.10612 -12.88144 -12.47473 -12.23592 -11.97488 -11.65805 -11.56827 -11.48088 -11.31711 -11.16946 -10.93098 -10.87924 -10.77654 -10.44914 -10.32967 -9.80988 -9.70484 -9.24245 -8.99966 -8.78270 -8.36906 -7.70188 -6.01250 -4.02822 1.07909 1.24341 2.02603 3.29857 3.37731 3.41128 3.45150 3.88303 4.41737 4.46879 4.60737 4.84559 5.04925 5.09323 5.16130 5.34753 5.36276 5.50377 5.63625 5.68853 5.70617 5.72096 5.87765 6.00393 6.04589 6.17836 6.26528 6.30133 6.42377 6.48135 6.59743 6.89130 6.97195 7.12143 7.19086 7.24520 7.63734 7.77832 7.97948 8.41030 9.03414 9.60995 11.10275 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024277 B = 0.003768 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.069249 B = 7429.008225 C = 8238.700528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.082 4.082 3 H 0.058 0.942 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.057 0.943 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.053 3.947 14 N -0.469 5.469 15 C 0.047 3.953 16 C -0.083 4.083 17 C -0.145 4.145 18 C -0.069 4.069 19 C -0.146 4.146 20 C -0.006 4.006 21 Cl -0.073 7.073 22 C -0.135 4.135 23 C 0.124 3.876 24 H 0.039 0.961 25 H 0.059 0.941 26 H 0.040 0.960 27 H 0.014 0.986 28 H 0.017 0.983 29 H 0.259 0.741 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.433 2.234 20.013 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.101 4.101 3 H 0.077 0.923 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 C -0.072 4.072 14 N -0.181 5.181 15 C -0.079 4.079 16 C -0.120 4.120 17 C -0.148 4.148 18 C -0.088 4.088 19 C -0.166 4.166 20 C -0.033 4.033 21 Cl -0.044 7.044 22 C -0.157 4.157 23 C 0.023 3.977 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.032 0.968 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.069 2.082 19.754 19.864 hybrid contribution 0.424 0.055 -0.921 1.015 sum 0.354 2.137 18.833 18.957 Atomic orbital electron populations 1.21621 0.95559 1.00527 1.00587 1.21258 0.96123 0.99180 0.93529 0.92324 1.19122 0.95996 0.95657 0.90255 1.21234 1.34735 1.08320 0.90878 0.92463 1.25015 0.95270 0.95075 0.99121 1.69971 1.39006 1.21199 1.23350 0.86575 0.78271 0.80129 0.83270 1.19733 1.21087 1.21046 1.22653 0.98548 0.97606 0.88415 1.60563 1.52529 1.03781 1.01271 1.23271 0.98484 0.90441 0.95672 1.21332 1.02858 0.93418 0.94422 1.20646 1.02857 0.96132 0.95172 1.20253 0.98722 0.94513 0.95285 1.20789 1.03999 0.92544 0.99227 1.20495 1.02808 0.84899 0.95088 1.98365 1.96850 1.14330 1.94892 1.20290 1.05155 0.93724 0.96537 1.19699 0.93085 0.92027 0.92862 0.94235 0.92165 0.94072 0.96809 0.96442 0.93091 0.93745 0.90532 0.88409 0.91667 0.90032 0.89461 0.85388 0.85062 0.84894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.90 37.16 0.33 -2.05 16 2 C -0.08 -1.62 2.29 -90.62 -0.21 -1.83 16 3 H 0.06 1.15 7.16 -51.93 -0.37 0.78 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.09 8.34 -34.44 -0.29 -14.37 16 6 H 0.06 1.53 7.08 -52.49 -0.37 1.16 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 9 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.05 0.90 4.04 -3.82 -0.02 0.89 16 14 N -0.47 -7.02 4.59 -168.93 -0.77 -7.80 16 15 C 0.05 0.60 5.75 -2.43 -0.01 0.58 16 16 C -0.08 -0.86 7.04 -26.61 -0.19 -1.05 16 17 C -0.14 -1.76 6.23 -104.03 -0.65 -2.41 16 18 C -0.07 -0.72 10.03 -39.68 -0.40 -1.12 16 19 C -0.15 -1.57 9.84 -39.50 -0.39 -1.96 16 20 C -0.01 -0.07 6.31 -39.59 -0.25 -0.32 16 21 Cl -0.07 -0.85 28.94 -51.86 -1.50 -2.35 16 22 C -0.14 -1.87 9.29 -39.24 -0.36 -2.24 16 23 C 0.12 1.75 5.96 -83.28 -0.50 1.26 16 24 H 0.04 0.67 7.88 -51.93 -0.41 0.26 16 25 H 0.06 1.23 6.83 -51.93 -0.35 0.87 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.04 0.77 7.96 -51.93 -0.41 0.36 16 31 H 0.08 1.32 7.08 -51.93 -0.37 0.95 16 32 H 0.10 1.19 8.05 -51.93 -0.42 0.77 16 33 H 0.07 0.85 7.75 -51.93 -0.40 0.44 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.13 1.85 7.27 -52.48 -0.38 1.47 16 LS Contribution 323.79 15.07 4.88 4.88 Total: -1.00 -29.47 323.79 -10.41 -39.88 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -5.58 Total: -2.52 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -3.15 Total: -22.58 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: -0.04 Total: -33.71 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.47 -10.41 -39.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205353699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.826 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds