Wall clock time and date at job start Fri Apr 10 2020 17:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47024 * 2 1 4 4 C 1.52998 * 109.47363 * 240.00035 * 2 1 3 5 5 C 1.50703 * 109.47147 * 64.99577 * 4 2 1 6 6 H 1.07995 * 120.00013 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99685 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00446 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99646 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47209 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46956 * 120.00059 * 9 7 5 12 12 H 1.48499 * 109.47265 * 240.00153 * 9 7 5 13 13 C 1.52997 * 109.47387 * 119.99558 * 2 1 3 14 14 N 1.46906 * 109.47433 * 295.33172 * 13 2 1 15 15 C 1.47901 * 110.99890 * 294.39493 * 14 13 2 16 16 C 1.54600 * 102.79804 * 210.98379 * 15 14 13 17 17 C 1.51583 * 102.82978 * 25.44880 * 16 15 14 18 18 C 1.37932 * 131.54323 * 164.01248 * 17 16 15 19 19 C 1.38269 * 120.10009 * 180.28646 * 18 17 16 20 20 C 1.38432 * 119.86765 * 359.97438 * 19 18 17 21 21 Cl 1.73598 * 119.87902 * 179.89942 * 20 19 18 22 22 C 1.38019 * 120.23777 * 359.87936 * 20 19 18 23 23 C 1.38973 * 107.95209 * 344.04029 * 17 16 15 24 24 H 1.08995 * 109.47403 * 304.82082 * 1 2 3 25 25 H 1.09000 * 109.47380 * 64.82492 * 1 2 3 26 26 H 1.09000 * 109.46560 * 184.82261 * 1 2 3 27 27 H 1.09001 * 109.47266 * 184.99821 * 4 2 1 28 28 H 1.08995 * 109.46975 * 304.99927 * 4 2 1 29 29 H 0.96998 * 119.99929 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47519 * 175.33227 * 13 2 1 31 31 H 1.09003 * 109.47046 * 55.33219 * 13 2 1 32 32 H 1.09005 * 110.78415 * 92.60579 * 15 14 13 33 33 H 1.09003 * 110.77929 * 329.36230 * 15 14 13 34 34 H 1.09006 * 110.73676 * 143.78096 * 16 15 14 35 35 H 1.09000 * 110.74057 * 267.11000 * 16 15 14 36 36 H 1.08003 * 119.94624 * 0.25695 * 18 17 16 37 37 H 1.07999 * 120.06789 * 179.97438 * 19 18 17 38 38 H 1.08005 * 119.90803 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5193 -3.8511 9 14 1.4975 0.5620 -5.2497 10 1 0.7411 1.7736 -4.8435 11 1 2.7153 0.9667 -5.9970 12 1 0.6432 -0.2874 -6.1180 13 6 2.0400 -0.7211 1.2492 14 7 1.6446 0.0334 2.4461 15 6 2.3176 1.3498 2.4891 16 6 2.4654 1.6095 4.0059 17 6 2.4694 0.2099 4.5882 18 6 2.8515 -0.2650 5.8255 19 6 2.7597 -1.6152 6.1087 20 6 2.2829 -2.4902 5.1478 21 17 2.1700 -4.1859 5.5020 22 6 1.8965 -2.0193 3.9093 23 6 1.9848 -0.6591 3.6179 24 1 -0.3634 0.5868 0.8436 25 1 -0.3634 0.4371 -0.9300 26 1 -0.3632 -1.0241 0.0864 27 1 3.1263 -0.7994 -1.2056 28 1 1.6054 -1.7197 -1.2951 29 1 2.9222 -1.8426 -4.7318 30 1 3.1268 -0.7941 1.2084 31 1 1.6100 -1.7218 1.2921 32 1 1.6977 2.1165 2.0241 33 1 3.2946 1.3005 2.0082 34 1 3.4046 2.1195 4.2205 35 1 1.6186 2.1824 4.3838 36 1 3.2234 0.4189 6.5742 37 1 3.0594 -1.9865 7.0775 38 1 1.5256 -2.7067 3.1634 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205353699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:01 Heat of formation + Delta-G solvation = -4.896000 kcal Electronic energy + Delta-G solvation = -19151.726280 eV Core-core repulsion = 16211.460223 eV Total energy + Delta-G solvation = -2940.266057 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.77797 -38.62982 -37.45953 -36.31912 -34.44772 -33.10325 -30.69966 -29.70444 -28.77159 -27.00424 -24.88795 -24.06371 -22.46062 -22.16410 -20.38076 -18.57212 -17.89334 -17.09462 -16.76040 -16.60951 -16.38083 -15.63314 -15.19847 -14.93429 -14.55335 -14.39983 -14.30546 -13.97187 -13.49066 -13.33852 -13.12683 -12.82501 -12.66216 -12.65212 -12.48026 -12.32581 -12.24665 -12.22560 -11.95066 -11.82554 -11.50309 -11.13553 -11.07646 -10.72780 -10.55149 -9.71194 -8.74240 -8.18378 -6.27678 0.15028 0.29940 1.09927 1.40029 1.40840 1.53517 2.40845 2.49675 2.85508 3.15635 3.51465 3.66912 3.91812 4.01990 4.11994 4.17322 4.28588 4.34102 4.41860 4.43515 4.71033 4.74680 4.76966 4.83418 4.91695 4.94561 5.03786 5.14995 5.21827 5.28247 5.36835 5.43473 5.45748 5.52510 5.59949 5.76836 5.85585 5.93075 6.12763 6.28063 6.88197 7.40979 8.94022 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024277 B = 0.003768 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.069249 B = 7429.008225 C = 8238.700528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.070 4.070 3 H 0.063 0.937 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.064 0.936 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.068 3.932 14 N -0.475 5.475 15 C 0.039 3.961 16 C -0.073 4.073 17 C -0.145 4.145 18 C -0.063 4.063 19 C -0.137 4.137 20 C -0.018 4.018 21 Cl -0.071 7.071 22 C -0.153 4.153 23 C 0.093 3.907 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.035 0.965 27 H -0.013 1.013 28 H -0.011 1.011 29 H 0.262 0.738 30 H 0.033 0.967 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.057 0.943 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.165 0.835 37 H 0.157 0.843 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.302 4.219 21.857 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.089 4.089 3 H 0.082 0.918 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.082 0.918 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.207 1.207 13 C -0.058 4.058 14 N -0.188 5.188 15 C -0.087 4.087 16 C -0.110 4.110 17 C -0.148 4.148 18 C -0.082 4.082 19 C -0.157 4.157 20 C -0.045 4.045 21 Cl -0.043 7.043 22 C -0.175 4.175 23 C -0.007 4.007 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.005 0.995 28 H 0.007 0.993 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.183 0.817 37 H 0.175 0.825 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.206 4.074 21.627 22.008 hybrid contribution 0.502 -0.619 -1.402 1.612 sum 0.297 3.456 20.225 20.520 Atomic orbital electron populations 1.21509 0.94631 1.00469 1.00683 1.21023 0.96698 0.98818 0.92364 0.91831 1.19000 0.94158 0.94696 0.92633 1.21635 1.34399 1.08586 0.91853 0.91823 1.25944 0.95224 0.96055 1.02669 1.70109 1.40344 1.22990 1.24236 0.85457 0.78061 0.78934 0.78972 1.18371 1.20559 1.20702 1.22283 0.97545 0.97169 0.88823 1.60552 1.53423 1.04363 1.00490 1.23409 0.98021 0.89399 0.97847 1.21356 1.04796 0.92718 0.92086 1.20977 1.01907 0.96612 0.95324 1.20663 0.97385 0.94849 0.95262 1.21176 1.02268 0.92580 0.99668 1.20645 1.03333 0.85406 0.95115 1.98362 1.96874 1.14240 1.94779 1.20330 1.06145 0.93835 0.97145 1.19842 0.95082 0.92570 0.93163 0.91877 0.93698 0.94629 0.99472 0.99295 0.92956 0.94875 0.91553 0.87848 0.92472 0.87581 0.87891 0.81748 0.82501 0.86353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.40 8.90 71.98 0.64 -3.76 16 2 C -0.07 -2.83 2.29 -10.80 -0.02 -2.86 16 3 H 0.06 2.50 7.16 -2.39 -0.02 2.48 16 4 C 0.03 1.71 4.45 29.85 0.13 1.85 16 5 C -0.53 -29.45 8.34 25.60 0.21 -29.24 16 6 H 0.06 3.41 7.08 -2.91 -0.02 3.39 16 7 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 8 N -0.94 -57.20 13.29 21.45 0.28 -56.91 16 9 Si 0.96 44.18 29.54 68.60 2.03 46.20 16 10 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 C 0.07 2.40 4.04 86.30 0.35 2.75 16 14 N -0.48 -14.07 4.59 -688.38 -3.16 -17.23 16 15 C 0.04 0.93 5.75 86.66 0.50 1.43 16 16 C -0.07 -1.29 7.04 30.67 0.22 -1.07 16 17 C -0.15 -3.16 6.23 -19.48 -0.12 -3.28 16 18 C -0.06 -1.09 10.03 22.20 0.22 -0.87 16 19 C -0.14 -2.58 9.84 22.32 0.22 -2.36 16 20 C -0.02 -0.43 6.31 22.26 0.14 -0.28 16 21 Cl -0.07 -1.61 28.94 -2.72 -0.08 -1.69 16 22 C -0.15 -4.27 9.29 22.49 0.21 -4.06 16 23 C 0.09 2.58 5.96 38.24 0.23 2.80 16 24 H 0.06 2.09 7.88 -2.39 -0.02 2.07 16 25 H 0.04 1.82 6.83 -2.39 -0.02 1.80 16 26 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 27 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 28 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 29 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.03 1.22 7.96 -2.39 -0.02 1.20 16 31 H 0.07 2.44 7.08 -2.39 -0.02 2.42 16 32 H 0.10 2.33 8.05 -2.38 -0.02 2.31 16 33 H 0.06 1.44 7.75 -2.39 -0.02 1.43 16 34 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 38 H 0.12 3.51 7.27 -2.91 -0.02 3.49 16 Total: -1.00 -64.79 323.79 3.50 -61.29 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.04 Total: 6.92 kcal Atomic # 6 Polarization: -41.98 SS G_CDS: 3.39 Total: -38.59 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -2.87 Total: -74.14 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.69 kcal Total: -64.79 3.50 -61.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205353699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.397 kcal (2) G-P(sol) polarization free energy of solvation -64.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds