Wall clock time and date at job start Fri Apr 10 2020 17:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 120.00005 * 2 1 4 4 N 1.46496 * 109.47379 * 124.99553 * 3 2 1 5 5 C 1.34761 * 125.87802 * 124.99663 * 4 3 2 6 6 C 1.36532 * 107.60013 * 180.02562 * 5 4 3 7 7 C 1.48351 * 126.23202 * 180.02562 * 6 5 4 8 8 C 1.39806 * 119.53828 * 0.02562 * 7 6 5 9 9 C 1.37696 * 121.17762 * 180.02562 * 8 7 6 10 10 C 1.39600 * 120.17538 * 359.97438 * 9 8 7 11 11 C 1.43202 * 120.45410 * 179.97438 * 10 9 8 12 12 N 8.95274 * 163.89547 * 321.79273 * 4 1 2 13 13 C 1.46555 * 119.08684 * 0.25641 * 10 9 8 14 14 C 1.40848 * 120.55427 * 179.72125 * 13 10 9 15 15 H 1.08003 * 120.00385 * 24.39935 * 14 13 10 16 16 C 1.40231 * 120.00195 * 204.39711 * 14 13 10 17 17 N 1.30659 * 119.99637 * 17.30495 * 16 14 13 18 18 Si 1.86793 * 119.99964 * 197.30955 * 16 14 13 19 19 H 1.48502 * 109.47660 * 89.99813 * 18 16 14 20 20 H 1.48501 * 109.46964 * 210.00126 * 18 16 14 21 21 H 1.48503 * 109.47595 * 329.99734 * 18 16 14 22 22 C 1.38605 * 119.52824 * 180.02562 * 7 6 5 23 23 C 1.40899 * 107.52523 * 0.26879 * 6 5 4 24 24 N 1.30646 * 108.08391 * 359.55180 * 23 6 5 25 25 H 1.07993 * 120.00204 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.99690 * 180.02562 * 1 2 3 27 27 H 1.08005 * 120.00574 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46941 * 4.99617 * 3 2 1 29 29 H 1.08995 * 109.46834 * 244.99717 * 3 2 1 30 30 H 1.07996 * 126.19781 * 0.02562 * 5 4 3 31 31 H 1.07997 * 119.41238 * 0.04131 * 8 7 6 32 32 H 1.07993 * 119.91343 * 179.97438 * 9 8 7 33 33 H 0.96998 * 119.99746 * 184.65613 * 17 16 14 34 34 H 1.07998 * 120.13708 * 0.02562 * 22 7 6 35 35 H 1.08001 * 125.95510 * 179.72138 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3213 1.5514 1.0574 6 6 4.8206 1.4943 2.3268 7 6 6.2391 1.6783 2.7202 8 6 7.1988 1.9380 1.7374 9 6 8.5248 2.1138 2.0645 10 6 8.9352 2.0353 3.3965 11 6 10.3127 2.2167 3.7435 12 7 11.4058 2.3584 4.0185 13 6 7.9380 1.7584 4.4342 14 6 8.3189 1.6668 5.7871 15 1 9.2133 2.1649 6.1313 16 6 7.5369 0.9287 6.6873 17 7 6.6677 0.0622 6.2393 18 14 7.7380 1.1846 8.5266 19 1 6.8114 2.2519 8.9823 20 1 7.4252 -0.0800 9.2394 21 1 9.1374 1.5854 8.8207 22 6 6.5942 1.5904 4.0572 23 6 3.7440 1.2231 3.1944 24 7 2.6567 1.1336 2.4757 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6213 1.4026 -0.9313 30 1 4.8876 1.7384 0.1570 31 1 6.8948 2.0020 0.7030 32 1 9.2491 2.3131 1.2887 33 1 6.0798 -0.3990 6.8578 34 1 5.8423 1.3888 4.8057 35 1 3.8064 1.1117 4.2669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222391554.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:39 Heat of formation + Delta-G solvation = 136.569239 kcal Electronic energy + Delta-G solvation = -19680.742197 eV Core-core repulsion = 16645.503039 eV Total energy + Delta-G solvation = -3035.239157 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79655 -37.60197 -35.51434 -34.99732 -34.05753 -31.80970 -31.04029 -29.83663 -28.30414 -26.04817 -25.63925 -22.50133 -21.70057 -20.59963 -19.91369 -19.59311 -17.69061 -17.03318 -16.69589 -15.40661 -15.25329 -15.07562 -14.22711 -14.00129 -13.71038 -13.25628 -13.10634 -12.78925 -12.60161 -12.53489 -12.44760 -11.86976 -11.70853 -11.51853 -11.50909 -11.27171 -11.14201 -10.91265 -10.59260 -10.40552 -9.95288 -9.75573 -9.65238 -9.45493 -9.09456 -8.64941 -7.70133 -7.15145 -6.82790 -4.65956 1.78322 1.88141 2.39394 2.70998 2.91614 2.97174 3.01540 3.06984 3.40173 3.75627 3.98051 4.40276 4.51726 4.52571 4.67835 4.90736 5.13453 5.29601 5.38434 5.48277 5.56134 5.62214 5.82809 5.99638 6.18910 6.26222 6.30313 6.39230 6.40752 6.77226 6.91426 6.98031 7.07466 7.28794 7.30564 7.57185 7.74241 7.84677 7.94355 8.09024 8.30019 8.50738 8.62166 8.89286 9.82363 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017996 B = 0.004586 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.521902 B = 6103.491067 C = 7507.804760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.166 4.166 3 C 0.165 3.835 4 N -0.379 5.379 5 C 0.049 3.951 6 C -0.169 4.169 7 C 0.029 3.971 8 C -0.242 4.242 9 C -0.027 4.027 10 C -0.193 4.193 11 C 0.301 3.699 12 N -0.515 5.515 13 C 0.155 3.845 14 C -0.432 4.432 15 H 0.084 0.916 16 C 0.078 3.922 17 N -0.765 5.765 18 Si 0.911 3.089 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.258 1.258 22 C -0.153 4.153 23 C 0.066 3.934 24 N -0.303 5.303 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.172 0.828 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.289 0.711 34 H 0.128 0.872 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.453 0.071 -8.819 15.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.044 3.956 4 N -0.161 5.161 5 C -0.095 4.095 6 C -0.180 4.180 7 C 0.027 3.973 8 C -0.262 4.262 9 C -0.047 4.047 10 C -0.199 4.199 11 C -0.008 4.008 12 N -0.194 5.194 13 C 0.149 3.851 14 C -0.460 4.460 15 H 0.102 0.898 16 C -0.144 4.144 17 N -0.387 5.387 18 Si 0.734 3.266 19 H -0.187 1.187 20 H -0.198 1.198 21 H -0.182 1.182 22 C -0.173 4.173 23 C -0.120 4.120 24 N -0.123 5.123 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.102 0.898 29 H 0.119 0.881 30 H 0.189 0.811 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.146 0.854 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -12.251 -0.139 -8.433 14.874 hybrid contribution 0.479 -0.008 0.636 0.796 sum -11.772 -0.147 -7.798 14.121 Atomic orbital electron populations 1.23859 0.95603 1.02205 0.98828 1.23008 0.96246 0.98081 1.01150 1.20677 0.91935 0.96713 0.86264 1.48349 1.05721 1.56305 1.05718 1.22522 0.84421 1.02821 0.99781 1.19246 0.94872 1.12510 0.91408 1.17852 0.88439 0.97340 0.93699 1.20006 0.92643 1.16623 0.96938 1.20335 0.95046 0.96091 0.93275 1.16966 0.84541 1.24808 0.93590 1.25847 0.92585 0.90994 0.91380 1.81013 1.13090 1.15445 1.09891 1.18330 0.89804 0.85854 0.91066 1.19762 1.08560 1.24847 0.92840 0.89775 1.26039 0.93743 0.92232 1.02387 1.69730 1.15060 1.15225 1.38705 0.86224 0.80586 0.79030 0.80757 1.18669 1.19845 1.18210 1.21238 0.95791 1.06485 0.93744 1.24087 0.89407 0.98144 1.00401 1.77169 1.23797 1.24642 0.86669 0.88305 0.87988 0.86872 0.89798 0.88059 0.81073 0.88805 0.88432 0.89920 0.85422 0.79792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 14.32 29.01 0.42 -0.97 16 2 C -0.17 -1.61 9.69 -36.02 -0.35 -1.96 16 3 C 0.17 1.62 6.94 -5.19 -0.04 1.59 16 4 N -0.38 -5.40 3.66 -62.27 -0.23 -5.63 16 5 C 0.05 0.73 10.80 -16.88 -0.18 0.55 16 6 C -0.17 -3.06 6.03 -105.34 -0.64 -3.69 16 7 C 0.03 0.59 5.86 -105.01 -0.62 -0.02 16 8 C -0.24 -4.66 9.50 -39.19 -0.37 -5.03 16 9 C -0.03 -0.54 9.74 -39.27 -0.38 -0.92 16 10 C -0.19 -4.45 5.95 -104.11 -0.62 -5.07 16 11 C 0.30 7.17 14.28 -22.47 -0.32 6.85 16 12 N -0.51 -12.60 18.54 41.84 0.78 -11.83 16 13 C 0.15 3.75 5.73 -104.68 -0.60 3.15 16 14 C -0.43 -10.64 8.58 -37.85 -0.32 -10.96 16 15 H 0.08 2.11 7.37 -52.48 -0.39 1.73 16 16 C 0.08 1.78 5.16 -17.30 -0.09 1.69 16 17 N -0.76 -17.45 10.94 55.56 0.61 -16.84 16 18 Si 0.91 17.38 29.60 -169.99 -5.03 12.35 16 19 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 20 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 21 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 22 C -0.15 -3.47 8.21 -38.56 -0.32 -3.78 16 23 C 0.07 1.18 11.39 -17.05 -0.19 0.98 16 24 N -0.30 -5.13 12.36 30.81 0.38 -4.75 16 25 H 0.10 0.72 7.84 -52.49 -0.41 0.30 16 26 H 0.10 0.74 8.06 -52.49 -0.42 0.31 16 27 H 0.11 1.17 8.06 -52.48 -0.42 0.75 16 28 H 0.08 0.74 7.79 -51.93 -0.40 0.33 16 29 H 0.10 0.71 8.07 -51.93 -0.42 0.29 16 30 H 0.17 2.01 7.21 -52.49 -0.38 1.63 16 31 H 0.09 1.52 6.90 -52.49 -0.36 1.16 16 32 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.29 5.94 8.30 -40.82 -0.34 5.60 16 34 H 0.13 2.90 5.08 -52.49 -0.27 2.63 16 35 H 0.19 3.12 7.30 -52.49 -0.38 2.74 16 LS Contribution 318.64 15.07 4.80 4.80 Total: -1.00 -27.83 318.64 -6.73 -34.56 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -3.42 Total: 4.94 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -4.62 Total: -17.60 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 1.54 Total: -39.05 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.83 -6.73 -34.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222391554.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.130 kcal (2) G-P(sol) polarization free energy of solvation -27.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds