Wall clock time and date at job start Fri Apr 10 2020 17:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 120.00005 * 2 1 4 4 N 1.46496 * 109.47379 * 124.99553 * 3 2 1 5 5 C 1.34761 * 125.87802 * 124.99663 * 4 3 2 6 6 C 1.36532 * 107.60013 * 180.02562 * 5 4 3 7 7 C 1.48351 * 126.23202 * 180.02562 * 6 5 4 8 8 C 1.39806 * 119.53828 * 0.02562 * 7 6 5 9 9 C 1.37696 * 121.17762 * 180.02562 * 8 7 6 10 10 C 1.39600 * 120.17538 * 359.97438 * 9 8 7 11 11 C 1.43202 * 120.45410 * 179.97438 * 10 9 8 12 12 N 8.95274 * 163.89547 * 321.79273 * 4 1 2 13 13 C 1.46555 * 119.08684 * 0.25641 * 10 9 8 14 14 C 1.40848 * 120.55427 * 179.72125 * 13 10 9 15 15 H 1.08003 * 120.00385 * 24.39935 * 14 13 10 16 16 C 1.40231 * 120.00195 * 204.39711 * 14 13 10 17 17 N 1.30659 * 119.99637 * 17.30495 * 16 14 13 18 18 Si 1.86793 * 119.99964 * 197.30955 * 16 14 13 19 19 H 1.48502 * 109.47660 * 89.99813 * 18 16 14 20 20 H 1.48501 * 109.46964 * 210.00126 * 18 16 14 21 21 H 1.48503 * 109.47595 * 329.99734 * 18 16 14 22 22 C 1.38605 * 119.52824 * 180.02562 * 7 6 5 23 23 C 1.40899 * 107.52523 * 0.26879 * 6 5 4 24 24 N 1.30646 * 108.08391 * 359.55180 * 23 6 5 25 25 H 1.07993 * 120.00204 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.99690 * 180.02562 * 1 2 3 27 27 H 1.08005 * 120.00574 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46941 * 4.99617 * 3 2 1 29 29 H 1.08995 * 109.46834 * 244.99717 * 3 2 1 30 30 H 1.07996 * 126.19781 * 0.02562 * 5 4 3 31 31 H 1.07997 * 119.41238 * 0.04131 * 8 7 6 32 32 H 1.07993 * 119.91343 * 179.97438 * 9 8 7 33 33 H 0.96998 * 119.99746 * 184.65613 * 17 16 14 34 34 H 1.07998 * 120.13708 * 0.02562 * 22 7 6 35 35 H 1.08001 * 125.95510 * 179.72138 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3213 1.5514 1.0574 6 6 4.8206 1.4943 2.3268 7 6 6.2391 1.6783 2.7202 8 6 7.1988 1.9380 1.7374 9 6 8.5248 2.1138 2.0645 10 6 8.9352 2.0353 3.3965 11 6 10.3127 2.2167 3.7435 12 7 11.4058 2.3584 4.0185 13 6 7.9380 1.7584 4.4342 14 6 8.3189 1.6668 5.7871 15 1 9.2133 2.1649 6.1313 16 6 7.5369 0.9287 6.6873 17 7 6.6677 0.0622 6.2393 18 14 7.7380 1.1846 8.5266 19 1 6.8114 2.2519 8.9823 20 1 7.4252 -0.0800 9.2394 21 1 9.1374 1.5854 8.8207 22 6 6.5942 1.5904 4.0572 23 6 3.7440 1.2231 3.1944 24 7 2.6567 1.1336 2.4757 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6213 1.4026 -0.9313 30 1 4.8876 1.7384 0.1570 31 1 6.8948 2.0020 0.7030 32 1 9.2491 2.3131 1.2887 33 1 6.0798 -0.3990 6.8578 34 1 5.8423 1.3888 4.8057 35 1 3.8064 1.1117 4.2669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222391554.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:38 Heat of formation + Delta-G solvation = 123.344127 kcal Electronic energy + Delta-G solvation = -19681.315681 eV Core-core repulsion = 16645.503039 eV Total energy + Delta-G solvation = -3035.812641 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.02494 -39.24824 -36.97037 -36.25681 -35.70176 -33.04898 -32.38579 -31.48954 -29.63135 -27.50891 -26.92134 -24.04228 -23.16813 -21.68979 -21.29345 -20.57957 -19.37520 -18.61827 -18.01229 -16.89985 -16.18078 -16.06958 -15.72514 -15.51894 -15.07174 -14.62151 -14.48665 -14.37029 -14.13308 -13.88007 -13.73722 -13.40132 -13.22476 -13.01886 -12.98704 -12.73073 -12.52701 -12.24786 -12.11493 -11.83955 -11.44774 -11.26643 -11.12316 -10.51732 -10.28156 -10.08399 -9.40060 -8.81666 -8.34501 -6.45232 0.26122 1.03115 1.09894 1.15454 1.38545 1.49277 1.53225 1.89041 1.96642 2.10643 2.17371 2.68531 2.78812 3.65864 3.72321 3.83141 3.94359 4.07332 4.14541 4.34859 4.39631 4.61158 4.64276 4.83182 4.87101 4.95453 4.99239 5.06819 5.29000 5.36722 5.54685 5.63139 5.68720 5.76108 5.91547 6.04886 6.20668 6.22894 6.27537 6.57708 6.75420 6.83171 6.90508 7.05283 8.16181 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017996 B = 0.004586 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.521902 B = 6103.491067 C = 7507.804760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.187 4.187 3 C 0.155 3.845 4 N -0.368 5.368 5 C 0.079 3.921 6 C -0.211 4.211 7 C 0.040 3.960 8 C -0.231 4.231 9 C -0.025 4.025 10 C -0.219 4.219 11 C 0.306 3.694 12 N -0.538 5.538 13 C 0.135 3.865 14 C -0.472 4.472 15 H 0.064 0.936 16 C 0.049 3.951 17 N -0.787 5.787 18 Si 0.971 3.029 19 H -0.252 1.252 20 H -0.261 1.261 21 H -0.271 1.271 22 C -0.180 4.180 23 C 0.053 3.947 24 N -0.321 5.321 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.137 0.863 30 H 0.214 0.786 31 H 0.137 0.863 32 H 0.127 0.873 33 H 0.298 0.702 34 H 0.117 0.883 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.304 0.259 -11.366 18.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.206 4.206 3 C 0.036 3.964 4 N -0.149 5.149 5 C -0.068 4.068 6 C -0.222 4.222 7 C 0.038 3.962 8 C -0.251 4.251 9 C -0.045 4.045 10 C -0.225 4.225 11 C -0.002 4.002 12 N -0.219 5.219 13 C 0.129 3.871 14 C -0.500 4.500 15 H 0.082 0.918 16 C -0.171 4.171 17 N -0.410 5.410 18 Si 0.792 3.208 19 H -0.177 1.177 20 H -0.185 1.185 21 H -0.196 1.196 22 C -0.200 4.200 23 C -0.133 4.133 24 N -0.143 5.143 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.155 0.845 30 H 0.230 0.770 31 H 0.155 0.845 32 H 0.144 0.856 33 H 0.110 0.890 34 H 0.135 0.865 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -14.140 0.042 -11.000 17.915 hybrid contribution 0.846 -0.082 1.171 1.447 sum -13.293 -0.041 -9.829 16.533 Atomic orbital electron populations 1.24088 0.95319 1.03309 0.96601 1.22972 0.96753 0.97726 1.03173 1.21163 0.92155 0.97185 0.85881 1.48784 1.06368 1.54028 1.05725 1.23041 0.84663 0.99340 0.99776 1.19208 0.93779 1.16169 0.93092 1.18134 0.90249 0.94841 0.92996 1.20472 0.91736 1.14163 0.98695 1.20686 0.96319 0.94928 0.92574 1.17243 0.83941 1.26433 0.94926 1.26115 0.92793 0.90463 0.90841 1.80983 1.13751 1.16662 1.10473 1.18613 0.90823 0.86253 0.91368 1.19806 1.09100 1.26930 0.94149 0.91783 1.26624 0.93281 0.91564 1.05649 1.69735 1.15579 1.15520 1.40148 0.85347 0.79718 0.79511 0.76245 1.17653 1.18525 1.19585 1.21191 0.94965 1.08806 0.95014 1.24054 0.89987 0.98778 1.00488 1.77124 1.23622 1.25306 0.88203 0.87030 0.87144 0.87917 0.88401 0.84477 0.76988 0.84479 0.85558 0.89034 0.86497 0.80712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 14.32 67.78 0.97 -1.15 16 2 C -0.19 -3.10 9.69 25.65 0.25 -2.85 16 3 C 0.16 2.41 6.94 85.64 0.59 3.00 16 4 N -0.37 -9.27 3.66 -350.93 -1.28 -10.55 16 5 C 0.08 2.03 10.80 83.84 0.91 2.94 16 6 C -0.21 -7.27 6.03 -20.33 -0.12 -7.39 16 7 C 0.04 1.60 5.86 -20.12 -0.12 1.48 16 8 C -0.23 -8.20 9.50 22.52 0.21 -7.98 16 9 C -0.02 -0.95 9.74 22.47 0.22 -0.73 16 10 C -0.22 -10.24 5.95 -19.53 -0.12 -10.35 16 11 C 0.31 14.90 14.28 88.33 1.26 16.17 16 12 N -0.54 -26.94 18.54 19.01 0.35 -26.59 16 13 C 0.13 6.76 5.73 -19.90 -0.11 6.65 16 14 C -0.47 -24.47 8.58 23.39 0.20 -24.27 16 15 H 0.06 3.45 7.37 -2.91 -0.02 3.42 16 16 C 0.05 2.32 5.16 85.35 0.44 2.76 16 17 N -0.79 -37.20 10.94 21.87 0.24 -36.96 16 18 Si 0.97 36.75 29.60 68.60 2.03 38.78 16 19 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 20 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 21 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 22 C -0.18 -8.38 8.21 22.93 0.19 -8.20 16 23 C 0.05 1.86 11.39 85.52 0.97 2.84 16 24 N -0.32 -10.46 12.36 -56.43 -0.70 -11.16 16 25 H 0.11 1.23 7.84 -2.91 -0.02 1.21 16 26 H 0.11 1.30 8.06 -2.91 -0.02 1.28 16 27 H 0.10 1.91 8.06 -2.91 -0.02 1.89 16 28 H 0.10 1.31 7.79 -2.39 -0.02 1.29 16 29 H 0.14 1.16 8.07 -2.39 -0.02 1.14 16 30 H 0.21 3.58 7.21 -2.91 -0.02 3.56 16 31 H 0.14 3.65 6.90 -2.91 -0.02 3.63 16 32 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 33 H 0.30 12.58 8.30 -92.71 -0.77 11.81 16 34 H 0.12 5.59 5.08 -2.91 -0.01 5.58 16 35 H 0.18 6.25 7.30 -2.91 -0.02 6.23 16 Total: -1.00 -62.89 318.64 7.51 -55.38 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 1.12 Total: 18.20 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 5.75 Total: -27.10 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -1.39 Total: -85.26 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.78 kcal Total: -62.89 7.51 -55.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222391554.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.726 kcal (2) G-P(sol) polarization free energy of solvation -62.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds