Wall clock time and date at job start Fri Apr 10 2020 17:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31245 * 119.79518 * 2 1 4 4 C 1.33075 * 121.71552 * 180.02562 * 3 2 1 5 5 C 1.47836 * 119.46011 * 180.02562 * 4 3 2 6 6 C 1.41626 * 120.08383 * 179.72880 * 5 4 3 7 7 C 1.35653 * 119.56781 * 179.71399 * 6 5 4 8 8 C 1.41139 * 119.67545 * 0.54256 * 7 6 5 9 9 N 1.32515 * 132.02260 * 179.76377 * 8 7 6 10 10 C 1.33547 * 109.22558 * 179.97438 * 9 8 7 11 11 C 1.35047 * 108.63784 * 359.97438 * 10 9 8 12 12 N 1.37002 * 107.13840 * 0.02562 * 11 10 9 13 13 C 1.36131 * 132.38093 * 180.02562 * 12 11 10 14 14 C 1.39986 * 121.08601 * 0.02562 * 4 3 2 15 15 C 1.36538 * 119.46085 * 359.97438 * 14 4 3 16 16 C 1.40953 * 119.79784 * 180.02562 * 2 1 3 17 17 C 1.41026 * 120.54727 * 359.95268 * 16 2 1 18 18 H 1.07995 * 120.00150 * 334.72411 * 17 16 2 19 19 C 1.39942 * 119.99980 * 154.72064 * 17 16 2 20 20 N 1.30846 * 120.00080 * 343.70052 * 19 17 16 21 21 Si 1.86801 * 120.00022 * 163.70233 * 19 17 16 22 22 H 1.48508 * 109.47031 * 94.77370 * 21 19 17 23 23 H 1.48498 * 109.46961 * 214.77009 * 21 19 17 24 24 H 1.48496 * 109.46993 * 334.77669 * 21 19 17 25 25 H 1.08999 * 109.46539 * 269.97351 * 1 2 3 26 26 H 1.08999 * 109.47058 * 29.97244 * 1 2 3 27 27 H 1.09003 * 109.46830 * 149.97545 * 1 2 3 28 28 H 1.07995 * 120.21999 * 359.97438 * 6 5 4 29 29 H 1.07993 * 120.16368 * 180.26911 * 7 6 5 30 30 H 1.07996 * 125.68288 * 179.97438 * 10 9 8 31 31 H 1.08006 * 126.43088 * 179.97438 * 11 10 9 32 32 H 1.08000 * 119.83825 * 359.97438 * 13 12 11 33 33 H 1.08001 * 120.26934 * 180.02562 * 14 4 3 34 34 H 1.08008 * 120.78498 * 180.27615 * 15 14 4 35 35 H 0.96993 * 120.00062 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1592 1.1390 0.0000 4 6 3.4892 1.1835 -0.0005 5 6 4.1728 2.4944 0.0001 6 6 5.5876 2.5573 0.0054 7 6 6.2040 3.7657 0.0000 8 6 5.4291 4.9453 0.0008 9 7 5.7649 6.2272 0.0006 10 6 4.6565 6.9721 0.0011 11 6 3.5845 6.1508 0.0012 12 7 4.0603 4.8660 0.0012 13 6 3.4359 3.6564 0.0008 14 6 4.2518 0.0096 -0.0016 15 6 3.6206 -1.2011 -0.0016 16 6 2.2075 -1.2232 -0.0005 17 6 1.5098 -2.4487 -0.0001 18 1 0.5079 -2.4996 0.4000 19 6 2.1155 -3.5990 -0.5181 20 7 3.1737 -3.4943 -1.2806 21 14 1.4134 -5.2839 -0.1210 22 1 0.4915 -5.7044 -1.2067 23 1 2.5207 -6.2664 -0.0038 24 1 0.6699 -5.2202 1.1628 25 1 -0.3632 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 6.1721 1.6491 0.0094 29 1 7.2823 3.8248 -0.0005 30 1 4.6230 8.0516 0.0015 31 1 2.5469 6.4505 0.0020 32 1 2.3570 3.6085 0.0008 33 1 5.3305 0.0612 -0.0016 34 1 4.1879 -2.1202 0.0020 35 1 3.5933 -4.2915 -1.6399 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240216670.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:16 Heat of formation + Delta-G solvation = 105.101889 kcal Electronic energy + Delta-G solvation = -20065.920795 eV Core-core repulsion = 17029.317111 eV Total energy + Delta-G solvation = -3036.603684 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.34177 -38.89941 -36.81875 -34.39038 -33.33408 -32.14276 -31.07596 -29.36981 -28.36313 -27.11648 -25.38854 -23.24760 -22.63878 -21.39748 -20.95094 -20.27877 -17.67517 -17.20895 -16.48917 -16.01355 -15.47369 -15.32463 -14.71858 -14.16170 -14.05542 -13.79359 -13.39807 -13.34609 -13.06281 -12.40337 -11.93983 -11.86367 -11.80804 -11.68652 -11.32465 -11.25621 -11.08418 -11.02526 -10.79230 -10.63332 -10.00144 -9.84360 -9.65165 -8.69968 -8.44693 -8.28224 -7.71515 -7.29158 -7.09898 -4.70243 1.06889 1.49842 2.43807 2.77881 2.86061 2.88343 2.93599 3.01085 3.29550 3.62245 3.89901 4.41250 4.54494 4.88622 5.01267 5.25827 5.31962 5.37729 5.56054 5.74087 5.78739 5.87498 6.16371 6.21337 6.28589 6.34935 6.47931 6.50281 6.65078 6.71287 6.72768 6.88337 6.91945 6.95421 7.12412 7.39282 7.52326 7.60982 7.70645 8.14349 8.16586 8.34864 8.44410 9.36605 9.72563 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.039705 B = 0.003812 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.035976 B = 7342.539274 C = 7966.647428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.011 3.989 3 N -0.449 5.449 4 C -0.002 4.002 5 C 0.000 4.000 6 C -0.086 4.086 7 C -0.094 4.094 8 C 0.212 3.788 9 N -0.509 5.509 10 C 0.020 3.980 11 C -0.112 4.112 12 N -0.345 5.345 13 C 0.028 3.972 14 C -0.120 4.120 15 C -0.141 4.141 16 C 0.075 3.925 17 C -0.424 4.424 18 H 0.091 0.909 19 C 0.071 3.929 20 N -0.771 5.771 21 Si 0.916 3.084 22 H -0.266 1.266 23 H -0.272 1.272 24 H -0.256 1.256 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.174 0.826 31 H 0.176 0.824 32 H 0.170 0.830 33 H 0.103 0.897 34 H 0.128 0.872 35 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.338 4.947 1.519 5.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.135 4.135 3 N -0.157 5.157 4 C -0.136 4.136 5 C -0.004 4.004 6 C -0.111 4.111 7 C -0.114 4.114 8 C -0.031 4.031 9 N -0.230 5.230 10 C -0.132 4.132 11 C -0.245 4.245 12 N -0.014 5.014 13 C -0.095 4.095 14 C -0.140 4.140 15 C -0.166 4.166 16 C 0.070 3.930 17 C -0.452 4.452 18 H 0.109 0.891 19 C -0.151 4.151 20 N -0.394 5.394 21 Si 0.739 3.261 22 H -0.191 1.191 23 H -0.196 1.196 24 H -0.180 1.180 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.160 0.840 29 H 0.164 0.836 30 H 0.191 0.809 31 H 0.193 0.807 32 H 0.187 0.813 33 H 0.121 0.879 34 H 0.146 0.854 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.812 5.906 1.365 6.116 hybrid contribution -0.596 -1.864 0.015 1.957 sum 0.217 4.043 1.380 4.277 Atomic orbital electron populations 1.20275 0.90855 1.01371 1.00515 1.20964 0.95143 0.87849 1.09547 1.66662 1.08460 1.30717 1.09900 1.18284 0.89067 0.89502 1.16747 1.18323 0.91856 0.91427 0.98757 1.21212 0.93766 0.97794 0.98292 1.20038 0.99811 0.88008 1.03525 1.20958 0.81019 0.94165 1.06993 1.70653 1.29135 0.99091 1.24104 1.22331 0.87609 0.99632 1.03659 1.22576 1.01052 0.81343 1.19495 1.42713 1.08701 1.06117 1.43900 1.21920 0.99370 0.81204 1.07037 1.21228 0.98610 0.93201 1.00967 1.21294 0.94654 0.96663 1.03974 1.18436 0.92584 0.93177 0.88800 1.19748 1.01697 0.91921 1.31811 0.89082 1.26130 0.94192 1.02289 0.92487 1.69792 1.16651 1.32791 1.20172 0.86147 0.79718 0.79782 0.80460 1.19080 1.19649 1.17959 0.93177 0.93109 0.91354 0.83964 0.83622 0.80884 0.80684 0.81328 0.87861 0.85428 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 9.58 36.01 0.34 -1.04 16 2 C 0.01 0.26 6.86 -81.81 -0.56 -0.30 16 3 N -0.45 -10.17 9.26 -5.40 -0.05 -10.22 16 4 C 0.00 -0.05 6.73 -82.75 -0.56 -0.60 16 5 C 0.00 -0.01 5.87 -104.92 -0.62 -0.62 16 6 C -0.09 -1.41 9.41 -39.21 -0.37 -1.77 16 7 C -0.09 -1.48 10.08 -39.41 -0.40 -1.88 16 8 C 0.21 3.77 7.80 -155.96 -1.22 2.55 16 9 N -0.51 -9.01 11.31 -12.73 -0.14 -9.16 16 10 C 0.02 0.30 11.82 -17.94 -0.21 0.09 16 11 C -0.11 -1.66 11.76 -16.38 -0.19 -1.86 16 12 N -0.34 -6.00 2.94 -61.96 -0.18 -6.18 16 13 C 0.03 0.52 10.54 -15.88 -0.17 0.35 16 14 C -0.12 -2.56 9.39 -39.54 -0.37 -2.93 16 15 C -0.14 -3.31 8.72 -39.02 -0.34 -3.65 16 16 C 0.08 1.80 5.58 -106.64 -0.59 1.20 16 17 C -0.42 -9.74 8.13 -37.89 -0.31 -10.05 16 18 H 0.09 1.96 6.86 -52.49 -0.36 1.60 16 19 C 0.07 1.54 5.18 -17.33 -0.09 1.45 16 20 N -0.77 -17.51 10.95 55.55 0.61 -16.90 16 21 Si 0.92 16.22 29.59 -169.99 -5.03 11.19 16 22 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 23 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 24 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 1.27 6.76 -51.93 -0.35 0.92 16 28 H 0.14 2.01 6.20 -52.49 -0.33 1.68 16 29 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 30 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.18 1.99 8.06 -52.48 -0.42 1.56 16 32 H 0.17 3.01 7.46 -52.49 -0.39 2.62 16 33 H 0.10 1.89 6.16 -52.49 -0.32 1.56 16 34 H 0.13 3.01 6.27 -52.48 -0.33 2.68 16 35 H 0.29 5.90 8.30 -40.82 -0.34 5.57 16 LS Contribution 301.26 15.07 4.54 4.54 Total: -1.00 -27.23 301.26 -9.23 -36.46 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -3.33 Total: 9.33 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -5.65 Total: -19.06 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.23 Total: -42.46 kcal Atomic # 14 Polarization: 16.22 SS G_CDS: -5.03 Total: 11.19 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.23 -9.23 -36.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240216670.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.564 kcal (2) G-P(sol) polarization free energy of solvation -27.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds