Wall clock time and date at job start Fri Apr 10 2020 17:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38893 * 119.23982 * 2 1 4 4 C 1.36868 * 119.81244 * 179.74156 * 3 2 1 5 5 C 1.41118 * 118.40702 * 0.52018 * 4 3 2 6 6 C 1.40845 * 120.72623 * 179.72742 * 5 4 3 7 7 H 1.08000 * 119.99937 * 150.57449 * 6 5 4 8 8 C 1.39995 * 119.99469 * 330.57314 * 6 5 4 9 9 N 1.30824 * 119.99806 * 162.76192 * 8 6 5 10 10 Si 1.86794 * 120.00451 * 342.75269 * 8 6 5 11 11 H 1.48502 * 109.46787 * 90.44368 * 10 8 6 12 12 H 1.48497 * 109.47409 * 210.44216 * 10 8 6 13 13 H 1.48501 * 109.47075 * 330.44457 * 10 8 6 14 14 C 1.41929 * 118.55176 * 359.74789 * 5 4 3 15 15 C 1.47679 * 119.99854 * 180.02562 * 14 5 4 16 16 C 1.41681 * 120.09226 * 316.61078 * 15 14 5 17 17 C 1.35628 * 119.56623 * 179.97438 * 16 15 14 18 18 C 1.41155 * 119.68626 * 0.02562 * 17 16 15 19 19 N 1.32503 * 132.01181 * 179.97438 * 18 17 16 20 20 C 1.33546 * 109.22683 * 179.97438 * 19 18 17 21 21 C 1.35048 * 108.64259 * 0.02562 * 20 19 18 22 22 N 1.37007 * 107.13069 * 359.97438 * 21 20 19 23 23 C 1.36108 * 132.37334 * 180.29864 * 22 21 20 24 24 N 1.31715 * 119.24745 * 180.26790 * 2 1 3 25 25 H 1.09006 * 109.46842 * 269.72364 * 1 2 3 26 26 H 1.08999 * 109.46656 * 149.73047 * 1 2 3 27 27 H 1.08998 * 109.47402 * 29.72760 * 1 2 3 28 28 H 1.07997 * 120.09327 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.79953 * 180.26226 * 4 3 2 30 30 H 0.96995 * 120.00193 * 179.97438 * 9 8 6 31 31 H 1.08006 * 120.21333 * 359.95950 * 16 15 14 32 32 H 1.08002 * 120.15534 * 179.97438 * 17 16 15 33 33 H 1.07999 * 125.67872 * 180.02562 * 20 19 18 34 34 H 1.07996 * 126.43018 * 179.97438 * 21 20 19 35 35 H 1.07998 * 119.83833 * 359.94933 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2120 0.0000 4 6 3.5540 1.2256 0.0054 5 6 4.2378 -0.0088 -0.0005 6 6 5.6455 -0.0517 -0.0011 7 1 6.1606 -0.8845 0.4544 8 6 6.3771 0.9852 -0.5923 9 7 7.6464 1.1326 -0.3122 10 14 5.5408 2.1583 -1.7814 11 1 4.9951 3.3179 -1.0311 12 1 6.5285 2.6366 -2.7818 13 1 4.4341 1.4532 -2.4764 14 6 3.4759 -1.2062 -0.0062 15 6 4.1586 -2.5158 -0.0118 16 6 5.2772 -2.7301 -0.8545 17 6 5.8964 -3.9367 -0.8507 18 6 5.4198 -4.9645 -0.0088 19 7 5.8270 -6.2099 0.1882 20 6 5.0403 -6.7912 1.0975 21 6 4.1062 -5.8997 1.4933 22 7 4.3360 -4.7402 0.8007 23 6 3.7133 -3.5299 0.8059 24 7 2.1505 -1.1492 -0.0054 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3632 -0.8876 -0.5180 27 1 -0.3634 0.8924 -0.5096 28 1 1.6346 2.1409 0.0004 29 1 4.0977 2.1588 0.0097 30 1 8.1534 1.8508 -0.7220 31 1 5.6343 -1.9378 -1.4958 32 1 6.7497 -4.1106 -1.4896 33 1 5.1352 -7.8054 1.4564 34 1 3.3250 -6.0692 2.2194 35 1 2.8633 -3.3656 1.4517 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240216804.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:18 Heat of formation + Delta-G solvation = 109.116415 kcal Electronic energy + Delta-G solvation = -20658.445203 eV Core-core repulsion = 17622.015602 eV Total energy + Delta-G solvation = -3036.429601 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.22488 -39.14611 -36.66509 -34.47001 -33.12892 -32.20480 -31.74227 -29.14955 -28.25829 -28.04140 -24.67016 -23.38095 -22.37347 -21.53851 -21.24309 -20.44313 -17.73979 -17.22040 -16.49051 -15.87474 -15.61584 -15.32518 -14.68394 -14.20333 -14.00979 -13.78620 -13.55252 -13.50577 -13.15680 -12.65003 -12.29479 -12.11000 -11.82458 -11.66979 -11.44982 -11.23400 -11.11726 -10.89055 -10.52185 -10.48185 -10.07081 -9.71947 -9.69754 -8.83275 -8.49392 -8.30096 -7.77583 -7.33185 -7.22469 -4.81625 1.22094 1.69608 2.21924 2.45338 2.84988 2.96915 3.05599 3.10651 3.32542 3.66302 4.06117 4.22622 4.73019 4.92713 4.98955 5.19621 5.27895 5.55562 5.66187 5.66798 5.74887 5.86435 5.91636 6.03236 6.14907 6.21149 6.26021 6.40544 6.46917 6.61156 6.65947 6.78034 6.92740 7.00384 7.07408 7.20010 7.35576 7.53362 7.57755 7.94058 8.15882 8.29728 8.34673 9.14782 9.66790 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.006751 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.691489 B = 4146.725990 C = 5584.568137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.014 4.014 3 C -0.110 4.110 4 C -0.204 4.204 5 C 0.063 3.937 6 C -0.418 4.418 7 H 0.104 0.896 8 C 0.082 3.918 9 N -0.779 5.779 10 Si 0.911 3.089 11 H -0.265 1.265 12 H -0.284 1.284 13 H -0.245 1.245 14 C 0.032 3.968 15 C 0.008 3.992 16 C -0.053 4.053 17 C -0.108 4.108 18 C 0.227 3.773 19 N -0.512 5.512 20 C 0.021 3.979 21 C -0.117 4.117 22 N -0.351 5.351 23 C 0.039 3.961 24 N -0.437 5.437 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.293 0.707 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.173 0.827 34 H 0.174 0.826 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.696 -2.615 0.103 6.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.154 4.154 3 C -0.130 4.130 4 C -0.229 4.229 5 C 0.057 3.943 6 C -0.445 4.445 7 H 0.122 0.878 8 C -0.141 4.141 9 N -0.400 5.400 10 Si 0.737 3.263 11 H -0.191 1.191 12 H -0.211 1.211 13 H -0.168 1.168 14 C -0.108 4.108 15 C 0.004 3.996 16 C -0.077 4.077 17 C -0.129 4.129 18 C -0.017 4.017 19 N -0.232 5.232 20 C -0.131 4.131 21 C -0.249 4.249 22 N -0.021 5.021 23 C -0.085 4.085 24 N -0.145 5.145 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.124 0.876 29 H 0.133 0.867 30 H 0.104 0.896 31 H 0.171 0.829 32 H 0.164 0.836 33 H 0.190 0.810 34 H 0.191 0.809 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.272 -3.673 -0.244 6.430 hybrid contribution -0.419 1.867 0.188 1.923 sum -5.691 -1.806 -0.056 5.971 Atomic orbital electron populations 1.20299 0.90934 1.01264 1.00781 1.20253 0.95130 0.88122 1.11909 1.21214 0.94784 0.97727 0.99260 1.21233 0.94114 0.97659 1.09916 1.18345 0.94308 0.90917 0.90716 1.19562 0.89535 1.05903 1.29523 0.87823 1.26283 0.94835 0.96688 0.96314 1.69662 1.08873 1.27907 1.33586 0.86338 0.79815 0.80288 0.79893 1.19078 1.21097 1.16792 1.18943 0.88137 0.90097 1.13623 1.18063 0.94972 0.91487 0.95042 1.21403 0.93104 0.96117 0.97061 1.20066 1.02231 0.90448 1.00120 1.21036 0.89360 0.94179 0.97107 1.70669 1.28534 1.04052 1.19971 1.22313 0.93665 0.99810 0.97313 1.22513 1.08396 0.86191 1.07756 1.42677 1.22017 1.09584 1.27785 1.21928 1.00131 0.83079 1.03372 1.66872 1.09313 1.29549 1.08786 0.92877 0.92299 0.92662 0.87562 0.86717 0.89646 0.82868 0.83631 0.81000 0.80862 0.82316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.15 36.00 0.37 -0.80 16 2 C -0.01 -0.27 6.79 -82.40 -0.56 -0.83 16 3 C -0.11 -2.17 9.64 -39.84 -0.38 -2.55 16 4 C -0.20 -4.42 7.32 -38.99 -0.29 -4.71 16 5 C 0.06 1.43 5.12 -106.41 -0.54 0.89 16 6 C -0.42 -9.84 7.19 -37.94 -0.27 -10.11 16 7 H 0.10 2.59 6.70 -52.49 -0.35 2.24 16 8 C 0.08 1.87 5.43 -17.32 -0.09 1.78 16 9 N -0.78 -18.29 13.93 55.55 0.77 -17.51 16 10 Si 0.91 18.29 24.54 -169.99 -4.17 14.12 16 11 H -0.26 -5.15 6.46 56.52 0.37 -4.79 16 12 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 13 H -0.24 -5.10 7.01 56.52 0.40 -4.71 16 14 C 0.03 0.71 6.43 -82.24 -0.53 0.18 16 15 C 0.01 0.16 5.25 -104.93 -0.55 -0.39 16 16 C -0.05 -1.02 7.86 -39.20 -0.31 -1.33 16 17 C -0.11 -1.99 10.08 -39.41 -0.40 -2.39 16 18 C 0.23 4.41 7.80 -155.96 -1.22 3.19 16 19 N -0.51 -9.77 11.31 -12.73 -0.14 -9.91 16 20 C 0.02 0.34 11.82 -17.94 -0.21 0.12 16 21 C -0.12 -1.83 11.76 -16.37 -0.19 -2.02 16 22 N -0.35 -6.46 2.94 -61.95 -0.18 -6.64 16 23 C 0.04 0.73 10.59 -15.86 -0.17 0.56 16 24 N -0.44 -9.41 10.04 -5.46 -0.05 -9.46 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 28 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.12 2.42 4.55 -52.49 -0.24 2.18 16 30 H 0.29 6.19 8.30 -40.82 -0.34 5.86 16 31 H 0.15 2.97 6.76 -52.48 -0.35 2.62 16 32 H 0.15 2.33 8.06 -52.49 -0.42 1.91 16 33 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 35 H 0.16 2.78 8.06 -52.49 -0.42 2.36 16 LS Contribution 297.51 15.07 4.48 4.48 Total: -1.00 -26.92 297.51 -8.14 -35.07 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -3.50 Total: 8.27 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -5.35 Total: -18.41 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.39 Total: -43.53 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -4.17 Total: 14.12 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.92 -8.14 -35.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240216804.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.183 kcal (2) G-P(sol) polarization free energy of solvation -26.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds