Wall clock time and date at job start Fri Apr 10 2020 17:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38893 * 119.23982 * 2 1 4 4 C 1.36868 * 119.81244 * 179.74156 * 3 2 1 5 5 C 1.41118 * 118.40702 * 0.52018 * 4 3 2 6 6 C 1.40845 * 120.72623 * 179.72742 * 5 4 3 7 7 H 1.08000 * 119.99937 * 150.57449 * 6 5 4 8 8 C 1.39995 * 119.99469 * 330.57314 * 6 5 4 9 9 N 1.30824 * 119.99806 * 162.76192 * 8 6 5 10 10 Si 1.86794 * 120.00451 * 342.75269 * 8 6 5 11 11 H 1.48502 * 109.46787 * 90.44368 * 10 8 6 12 12 H 1.48497 * 109.47409 * 210.44216 * 10 8 6 13 13 H 1.48501 * 109.47075 * 330.44457 * 10 8 6 14 14 C 1.41929 * 118.55176 * 359.74789 * 5 4 3 15 15 C 1.47679 * 119.99854 * 180.02562 * 14 5 4 16 16 C 1.41681 * 120.09226 * 316.61078 * 15 14 5 17 17 C 1.35628 * 119.56623 * 179.97438 * 16 15 14 18 18 C 1.41155 * 119.68626 * 0.02562 * 17 16 15 19 19 N 1.32503 * 132.01181 * 179.97438 * 18 17 16 20 20 C 1.33546 * 109.22683 * 179.97438 * 19 18 17 21 21 C 1.35048 * 108.64259 * 0.02562 * 20 19 18 22 22 N 1.37007 * 107.13069 * 359.97438 * 21 20 19 23 23 C 1.36108 * 132.37334 * 180.29864 * 22 21 20 24 24 N 1.31715 * 119.24745 * 180.26790 * 2 1 3 25 25 H 1.09006 * 109.46842 * 269.72364 * 1 2 3 26 26 H 1.08999 * 109.46656 * 149.73047 * 1 2 3 27 27 H 1.08998 * 109.47402 * 29.72760 * 1 2 3 28 28 H 1.07997 * 120.09327 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.79953 * 180.26226 * 4 3 2 30 30 H 0.96995 * 120.00193 * 179.97438 * 9 8 6 31 31 H 1.08006 * 120.21333 * 359.95950 * 16 15 14 32 32 H 1.08002 * 120.15534 * 179.97438 * 17 16 15 33 33 H 1.07999 * 125.67872 * 180.02562 * 20 19 18 34 34 H 1.07996 * 126.43018 * 179.97438 * 21 20 19 35 35 H 1.07998 * 119.83833 * 359.94933 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2120 0.0000 4 6 3.5540 1.2256 0.0054 5 6 4.2378 -0.0088 -0.0005 6 6 5.6455 -0.0517 -0.0011 7 1 6.1606 -0.8845 0.4544 8 6 6.3771 0.9852 -0.5923 9 7 7.6464 1.1326 -0.3122 10 14 5.5408 2.1583 -1.7814 11 1 4.9951 3.3179 -1.0311 12 1 6.5285 2.6366 -2.7818 13 1 4.4341 1.4532 -2.4764 14 6 3.4759 -1.2062 -0.0062 15 6 4.1586 -2.5158 -0.0118 16 6 5.2772 -2.7301 -0.8545 17 6 5.8964 -3.9367 -0.8507 18 6 5.4198 -4.9645 -0.0088 19 7 5.8270 -6.2099 0.1882 20 6 5.0403 -6.7912 1.0975 21 6 4.1062 -5.8997 1.4933 22 7 4.3360 -4.7402 0.8007 23 6 3.7133 -3.5299 0.8059 24 7 2.1505 -1.1492 -0.0054 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3632 -0.8876 -0.5180 27 1 -0.3634 0.8924 -0.5096 28 1 1.6346 2.1409 0.0004 29 1 4.0977 2.1588 0.0097 30 1 8.1534 1.8508 -0.7220 31 1 5.6343 -1.9378 -1.4958 32 1 6.7497 -4.1106 -1.4896 33 1 5.1352 -7.8054 1.4564 34 1 3.3250 -6.0692 2.2194 35 1 2.8633 -3.3656 1.4517 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240216804.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:18 Heat of formation + Delta-G solvation = 95.417624 kcal Electronic energy + Delta-G solvation = -20659.039227 eV Core-core repulsion = 17622.015602 eV Total energy + Delta-G solvation = -3037.023625 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.61245 -40.75383 -38.11904 -36.12507 -34.57924 -33.74123 -33.36434 -30.55223 -29.78136 -29.45398 -26.22728 -24.86959 -23.86740 -23.11989 -22.63108 -21.93452 -19.44495 -18.61907 -17.99127 -17.50200 -17.11618 -16.74830 -16.22761 -15.67587 -15.44989 -15.31567 -14.99918 -14.95282 -14.53196 -14.15547 -13.78591 -13.62552 -13.32733 -13.03080 -12.94388 -12.73657 -12.55856 -12.41359 -12.05078 -12.02106 -11.68988 -11.35610 -11.11309 -10.41560 -10.09529 -9.87186 -9.28447 -9.01338 -8.66830 -6.55090 -0.26063 0.20952 0.63487 0.83422 1.22982 1.36768 1.45038 1.72801 1.99334 2.03655 2.52601 2.61703 3.35637 3.38845 3.47477 3.75115 3.88576 4.12231 4.18403 4.30602 4.44943 4.47575 4.51938 4.63465 4.73976 4.85939 4.93100 4.99286 5.05933 5.11518 5.22605 5.28059 5.38932 5.54883 5.58173 5.73583 5.77145 5.93356 6.13080 6.20222 6.49715 6.61771 6.93519 7.51526 8.03616 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.006751 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.691489 B = 4146.725990 C = 5584.568137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.010 4.010 3 C -0.114 4.114 4 C -0.216 4.216 5 C 0.045 3.955 6 C -0.441 4.441 7 H 0.073 0.927 8 C 0.055 3.945 9 N -0.820 5.820 10 Si 0.957 3.043 11 H -0.250 1.250 12 H -0.274 1.274 13 H -0.258 1.258 14 C 0.025 3.975 15 C -0.016 4.016 16 C -0.065 4.065 17 C -0.106 4.106 18 C 0.197 3.803 19 N -0.532 5.532 20 C 0.017 3.983 21 C -0.108 4.108 22 N -0.359 5.359 23 C 0.048 3.952 24 N -0.454 5.454 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.145 0.855 29 H 0.118 0.882 30 H 0.300 0.700 31 H 0.142 0.858 32 H 0.161 0.839 33 H 0.213 0.787 34 H 0.214 0.786 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.265 -2.884 0.577 8.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.151 4.151 3 C -0.133 4.133 4 C -0.241 4.241 5 C 0.040 3.960 6 C -0.469 4.469 7 H 0.091 0.909 8 C -0.164 4.164 9 N -0.444 5.444 10 Si 0.780 3.220 11 H -0.175 1.175 12 H -0.200 1.200 13 H -0.182 1.182 14 C -0.114 4.114 15 C -0.020 4.020 16 C -0.089 4.089 17 C -0.126 4.126 18 C -0.046 4.046 19 N -0.254 5.254 20 C -0.134 4.134 21 C -0.238 4.238 22 N -0.030 5.030 23 C -0.075 4.075 24 N -0.162 5.162 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.162 0.838 29 H 0.136 0.864 30 H 0.111 0.889 31 H 0.160 0.840 32 H 0.178 0.822 33 H 0.230 0.770 34 H 0.231 0.769 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -7.831 -3.958 0.238 8.777 hybrid contribution 0.184 1.746 0.138 1.761 sum -7.646 -2.212 0.376 7.969 Atomic orbital electron populations 1.20408 0.87473 1.02773 1.02381 1.21166 0.97502 0.87744 1.08710 1.21634 0.94155 0.99454 0.98069 1.21434 0.95310 0.97274 1.10082 1.18523 0.94194 0.92031 0.91259 1.19356 0.90060 1.05870 1.31609 0.90853 1.26798 0.95095 0.97542 0.96972 1.69684 1.09919 1.29364 1.35401 0.85642 0.78779 0.79040 0.78495 1.17547 1.20028 1.18238 1.19202 0.88614 0.90613 1.12972 1.18131 0.95734 0.91687 0.96420 1.21277 0.93646 0.96316 0.97642 1.20231 1.02287 0.90046 1.00020 1.21225 0.90450 0.94721 0.98219 1.70667 1.29535 1.04045 1.21119 1.23074 0.92744 1.01454 0.96170 1.23331 1.08712 0.84734 1.07062 1.42885 1.21865 1.10098 1.28128 1.21981 0.99921 0.82951 1.02689 1.67012 1.08898 1.30532 1.09772 0.91080 0.92098 0.89933 0.83775 0.86416 0.88927 0.83990 0.82165 0.77047 0.76910 0.80961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.97 10.15 71.23 0.72 -1.24 16 2 C -0.01 -0.38 6.79 42.73 0.29 -0.09 16 3 C -0.11 -4.19 9.64 22.11 0.21 -3.98 16 4 C -0.22 -9.19 7.32 22.66 0.17 -9.02 16 5 C 0.04 2.10 5.12 -21.02 -0.11 1.99 16 6 C -0.44 -21.86 7.19 23.33 0.17 -21.70 16 7 H 0.07 3.97 6.70 -2.91 -0.02 3.95 16 8 C 0.05 2.60 5.43 85.27 0.46 3.06 16 9 N -0.82 -40.22 13.93 21.84 0.30 -39.92 16 10 Si 0.96 37.91 24.54 68.60 1.68 39.60 16 11 H -0.25 -9.23 6.46 99.48 0.64 -8.58 16 12 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 13 H -0.26 -10.68 7.01 99.48 0.70 -9.98 16 14 C 0.02 1.11 6.43 42.43 0.27 1.39 16 15 C -0.02 -0.68 5.25 -20.07 -0.11 -0.78 16 16 C -0.06 -2.64 7.86 22.52 0.18 -2.47 16 17 C -0.11 -4.03 10.08 22.38 0.23 -3.81 16 18 C 0.20 7.65 7.80 134.16 1.05 8.70 16 19 N -0.53 -19.77 11.31 -194.19 -2.20 -21.97 16 20 C 0.02 0.48 11.82 83.70 0.99 1.47 16 21 C -0.11 -3.07 11.76 83.15 0.98 -2.09 16 22 N -0.36 -12.87 2.94 -349.90 -1.03 -13.90 16 23 C 0.05 1.80 10.59 83.90 0.89 2.69 16 24 N -0.45 -19.05 10.04 -171.17 -1.72 -20.77 16 25 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.08 1.80 8.07 -2.39 -0.02 1.78 16 28 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 29 H 0.12 4.86 4.55 -2.91 -0.01 4.85 16 30 H 0.30 13.16 8.30 -92.71 -0.77 12.40 16 31 H 0.14 6.00 6.76 -2.91 -0.02 5.98 16 32 H 0.16 5.37 8.06 -2.91 -0.02 5.34 16 33 H 0.21 4.17 8.06 -2.91 -0.02 4.14 16 34 H 0.21 4.14 8.06 -2.91 -0.02 4.12 16 35 H 0.17 5.84 8.06 -2.91 -0.02 5.82 16 Total: -1.00 -59.62 297.51 4.48 -55.13 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 1.05 Total: 27.70 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 6.39 Total: -25.88 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -4.64 Total: -96.55 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.68 Total: 39.60 kcal Total: -59.62 4.48 -55.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240216804.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.552 kcal (2) G-P(sol) polarization free energy of solvation -59.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds