Wall clock time and date at job start Fri Apr 10 2020 17:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 N 1.40019 * 125.96030 * 2 1 4 4 C 1.30161 * 109.78661 * 180.02562 * 3 2 1 5 5 C 1.41551 * 108.70314 * 359.95914 * 4 3 2 6 6 C 1.40221 * 133.41151 * 180.02562 * 5 4 3 7 7 C 1.36114 * 120.00837 * 179.97438 * 6 5 4 8 8 C 1.40079 * 120.56787 * 359.97438 * 7 6 5 9 9 C 1.48292 * 119.83860 * 180.02562 * 8 7 6 10 10 C 1.38948 * 119.62102 * 4.99697 * 9 8 7 11 11 C 1.40834 * 118.76397 * 179.97438 * 10 9 8 12 12 C 1.41526 * 120.98774 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99945 * 23.18577 * 12 11 10 14 14 C 1.40040 * 120.00107 * 203.18604 * 12 11 10 15 15 N 1.30729 * 120.00101 * 17.30546 * 14 12 11 16 16 Si 1.86804 * 119.99853 * 197.30909 * 14 12 11 17 17 H 1.48490 * 109.47250 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46844 * 120.00198 * 16 14 12 19 19 H 1.48505 * 109.47035 * 239.99488 * 16 14 12 20 20 C 1.41151 * 118.02750 * 0.02562 * 11 10 9 21 21 C 1.37734 * 119.07894 * 359.97438 * 20 11 10 22 22 N 1.31920 * 121.16443 * 359.74354 * 21 20 11 23 23 C 1.38764 * 120.32030 * 0.02562 * 8 7 6 24 24 C 1.37221 * 125.96480 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47170 * 270.05056 * 1 2 3 26 26 H 1.08999 * 109.47692 * 30.05539 * 1 2 3 27 27 H 1.09002 * 109.47496 * 150.05125 * 1 2 3 28 28 H 1.08001 * 125.64925 * 179.97438 * 4 3 2 29 29 H 1.08003 * 119.99493 * 0.25641 * 6 5 4 30 30 H 1.08003 * 119.71691 * 179.97438 * 7 6 5 31 31 H 1.08002 * 120.61345 * 0.02562 * 10 9 8 32 32 H 0.97003 * 120.00498 * 179.97438 * 15 14 12 33 33 H 1.07997 * 120.46117 * 179.97438 * 20 11 10 34 34 H 1.08001 * 119.42094 * 180.02562 * 21 20 11 35 35 H 1.07998 * 120.18169 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2871 1.1333 0.0000 4 6 3.5372 0.7708 -0.0005 5 6 3.5997 -0.6434 0.0000 6 6 4.6598 -1.5611 0.0003 7 6 4.4031 -2.8978 0.0014 8 6 3.0842 -3.3699 0.0028 9 6 2.8230 -4.8296 0.0045 10 6 3.8866 -5.7175 0.1100 11 6 3.6179 -7.0999 0.1104 12 6 4.6654 -8.0458 0.2149 13 1 5.6077 -7.7612 0.6595 14 6 4.4803 -9.3508 -0.2582 15 7 3.5021 -9.6139 -1.0846 16 14 5.6311 -10.7157 0.2917 17 1 6.6473 -10.1616 1.2219 18 1 4.8505 -11.7722 0.9843 19 1 6.3097 -11.2985 -0.8937 20 6 2.2729 -7.5142 0.0023 21 6 1.2846 -6.5601 -0.0978 22 7 1.5746 -5.2732 -0.0892 23 6 2.0210 -2.4782 0.0026 24 6 2.2708 -1.1106 0.0005 25 1 -0.3633 0.0009 1.0276 26 1 -0.3634 0.8894 -0.5147 27 1 -0.3634 -0.8904 -0.5130 28 1 4.3862 1.4383 -0.0011 29 1 5.6803 -1.2073 0.0042 30 1 5.2232 -3.6005 0.0011 31 1 4.9005 -5.3541 0.1909 32 1 3.3740 -10.5177 -1.4127 33 1 2.0222 -8.5647 -0.0018 34 1 0.2535 -6.8709 -0.1803 35 1 1.0051 -2.8446 0.0041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240307542.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:27 Heat of formation + Delta-G solvation = 112.673314 kcal Electronic energy + Delta-G solvation = -19886.646898 eV Core-core repulsion = 16850.371536 eV Total energy + Delta-G solvation = -3036.275362 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.16251 -38.61527 -36.66166 -34.22200 -33.42755 -31.06424 -30.92929 -29.99330 -27.94950 -26.51042 -26.00447 -23.21273 -22.46427 -21.11653 -20.58423 -20.24532 -17.69952 -16.77203 -16.37132 -15.69419 -15.37404 -14.81423 -14.62110 -14.20296 -13.97669 -13.74592 -13.48305 -13.10568 -12.97081 -12.61036 -12.55251 -12.48917 -11.67133 -11.50497 -11.26341 -11.15688 -11.09769 -10.75400 -10.65314 -10.32222 -9.91915 -9.87637 -9.51411 -8.68910 -8.14976 -8.09616 -7.68554 -7.21225 -6.93492 -4.68223 1.01459 1.80414 2.51218 2.53375 2.66592 2.96461 2.98787 3.03491 3.20926 3.79115 4.16652 4.56119 4.62362 4.83979 5.02638 5.10511 5.21469 5.43068 5.43650 5.54273 5.60007 5.62741 5.88713 5.98981 6.07884 6.33863 6.53624 6.66599 6.69495 6.76330 6.81759 7.02235 7.05689 7.12140 7.22467 7.32466 7.38796 7.76161 7.76909 8.00163 8.35622 8.63434 8.65062 9.46437 9.97746 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.035267 B = 0.003734 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.752243 B = 7496.605332 C = 8205.766945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.411 5.411 3 N -0.268 5.268 4 C 0.068 3.932 5 C -0.190 4.190 6 C -0.051 4.051 7 C -0.141 4.141 8 C 0.039 3.961 9 C 0.146 3.854 10 C -0.245 4.245 11 C 0.124 3.876 12 C -0.454 4.454 13 H 0.083 0.917 14 C 0.078 3.922 15 N -0.783 5.783 16 Si 0.912 3.088 17 H -0.258 1.258 18 H -0.270 1.270 19 H -0.273 1.273 20 C -0.207 4.207 21 C 0.087 3.913 22 N -0.562 5.562 23 C -0.120 4.120 24 C 0.125 3.875 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.188 0.812 29 H 0.126 0.874 30 H 0.133 0.867 31 H 0.108 0.892 32 H 0.284 0.716 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 10.489 1.443 10.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.200 5.200 3 N -0.082 5.082 4 C -0.126 4.126 5 C -0.198 4.198 6 C -0.071 4.071 7 C -0.161 4.161 8 C 0.035 3.965 9 C 0.012 3.988 10 C -0.268 4.268 11 C 0.116 3.884 12 C -0.485 4.485 13 H 0.102 0.898 14 C -0.142 4.142 15 N -0.408 5.408 16 Si 0.736 3.264 17 H -0.182 1.182 18 H -0.195 1.195 19 H -0.198 1.198 20 C -0.230 4.230 21 C -0.065 4.065 22 N -0.277 5.277 23 C -0.143 4.143 24 C 0.010 3.990 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.205 0.795 29 H 0.143 0.857 30 H 0.150 0.850 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.320 11.924 1.236 12.211 hybrid contribution 1.563 -2.100 0.161 2.623 sum -0.757 9.824 1.397 9.952 Atomic orbital electron populations 1.21695 0.74286 1.04039 1.02808 1.48194 1.05563 1.01429 1.64806 1.76568 1.02217 1.09558 1.19862 1.23802 0.94802 0.93767 1.00277 1.18939 0.93362 0.93488 1.13999 1.20189 0.97282 0.91873 0.97784 1.20843 0.96465 0.95227 1.03543 1.18613 0.92006 0.91652 0.94231 1.19056 0.89917 0.90460 0.99322 1.21897 0.97610 0.93750 1.13539 1.17780 0.92961 0.91107 0.86537 1.19651 1.00020 0.94124 1.34657 0.89840 1.25983 0.95723 1.00096 0.92426 1.69765 1.27620 1.22453 1.21010 0.86194 0.80561 0.80038 0.79625 1.18173 1.19517 1.19777 1.22298 0.93005 1.00289 1.07364 1.21951 0.98138 0.88432 0.98029 1.67254 1.20608 1.17521 1.22344 1.20145 1.00625 0.87600 1.05915 1.18866 0.90363 0.89585 1.00172 0.91477 0.89834 0.89612 0.79492 0.85654 0.84970 0.87446 0.90509 0.85452 0.85965 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.25 11.45 59.84 0.68 1.93 16 2 N -0.41 -6.25 4.07 -65.49 -0.27 -6.52 16 3 N -0.27 -4.03 12.44 30.87 0.38 -3.65 16 4 C 0.07 0.92 12.04 -17.00 -0.20 0.71 16 5 C -0.19 -2.95 6.17 -106.89 -0.66 -3.61 16 6 C -0.05 -0.74 10.04 -39.60 -0.40 -1.13 16 7 C -0.14 -2.38 9.32 -39.65 -0.37 -2.75 16 8 C 0.04 0.76 5.87 -104.88 -0.62 0.15 16 9 C 0.15 3.32 6.72 -83.04 -0.56 2.77 16 10 C -0.24 -5.78 9.24 -38.34 -0.35 -6.13 16 11 C 0.12 3.17 5.61 -106.56 -0.60 2.57 16 12 C -0.45 -11.36 9.12 -37.65 -0.34 -11.71 16 13 H 0.08 1.99 7.90 -52.48 -0.41 1.58 16 14 C 0.08 1.84 5.20 -17.35 -0.09 1.75 16 15 N -0.78 -19.10 10.90 55.55 0.61 -18.50 16 16 Si 0.91 17.53 29.59 -169.99 -5.03 12.50 16 17 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 18 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 19 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 20 C -0.21 -5.17 8.80 -38.66 -0.34 -5.51 16 21 C 0.09 2.02 11.15 -17.70 -0.20 1.82 16 22 N -0.56 -13.17 9.38 -9.95 -0.09 -13.26 16 23 C -0.12 -2.20 9.54 -39.10 -0.37 -2.57 16 24 C 0.12 2.11 6.88 -84.17 -0.58 1.53 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.19 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 30 H 0.13 2.10 6.16 -52.48 -0.32 1.78 16 31 H 0.11 2.30 6.18 -52.49 -0.32 1.98 16 32 H 0.28 6.23 8.29 -40.82 -0.34 5.90 16 33 H 0.13 3.22 6.16 -52.49 -0.32 2.90 16 34 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 35 H 0.13 2.47 7.51 -52.49 -0.39 2.07 16 LS Contribution 305.64 15.07 4.61 4.61 Total: -1.00 -29.24 305.64 -8.24 -37.48 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -3.45 Total: 7.52 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -4.99 Total: -20.18 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.63 Total: -41.92 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.24 -8.24 -37.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240307542.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.155 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds