Wall clock time and date at job start Fri Apr 10 2020 17:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.33950 * 125.00481 * 2 1 4 4 C 1.38583 * 107.81354 * 179.97438 * 3 2 1 5 5 C 1.40632 * 134.66218 * 180.29796 * 4 3 2 6 6 C 1.38442 * 119.32348 * 180.17544 * 5 4 3 7 7 C 1.47545 * 119.40771 * 179.73692 * 6 5 4 8 8 N 1.32724 * 120.00431 * 315.80583 * 7 6 5 9 9 C 1.31667 * 121.70470 * 179.72773 * 8 7 6 10 10 C 1.38933 * 121.52247 * 0.58656 * 9 8 7 11 11 C 1.36834 * 119.82675 * 359.42724 * 10 9 8 12 12 C 1.41141 * 118.40541 * 0.27059 * 11 10 9 13 13 C 1.40801 * 120.73053 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00254 * 150.73097 * 13 12 11 15 15 C 1.39977 * 119.99624 * 330.73645 * 13 12 11 16 16 N 1.30830 * 120.00223 * 161.38819 * 15 13 12 17 17 Si 1.86801 * 120.00080 * 341.38995 * 15 13 12 18 18 H 1.48496 * 109.47205 * 95.22461 * 17 15 13 19 19 H 1.48501 * 109.47186 * 215.22549 * 17 15 13 20 20 H 1.48502 * 109.47024 * 335.22633 * 17 15 13 21 21 C 1.40993 * 121.18500 * 359.46146 * 6 5 4 22 22 C 1.35193 * 121.66074 * 0.29835 * 21 6 5 23 23 C 1.41419 * 119.96174 * 359.97438 * 22 21 6 24 24 N 1.31929 * 134.36098 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47178 * 270.00403 * 1 2 3 26 26 H 1.09007 * 109.46665 * 30.00656 * 1 2 3 27 27 H 1.09002 * 109.47011 * 149.99920 * 1 2 3 28 28 H 1.08001 * 126.08989 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.33376 * 359.93479 * 5 4 3 30 30 H 1.08003 * 119.23998 * 180.28719 * 9 8 7 31 31 H 1.08006 * 120.08921 * 179.69207 * 10 9 8 32 32 H 1.07997 * 120.80161 * 180.29851 * 11 10 9 33 33 H 0.97000 * 120.00345 * 179.97438 * 16 15 13 34 34 H 1.08000 * 119.17052 * 180.27148 * 21 6 5 35 35 H 1.08004 * 120.02115 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2333 1.0972 0.0000 4 6 3.5573 0.6876 0.0006 5 6 4.7973 1.3510 0.0061 6 6 5.9645 0.6065 0.0011 7 6 7.2665 1.3007 0.0009 8 7 7.4629 2.3429 -0.7970 9 6 8.6092 2.9901 -0.8204 10 6 9.6766 2.6063 -0.0182 11 6 9.5426 1.5398 0.8285 12 6 8.3095 0.8535 0.8539 13 6 8.1178 -0.2502 1.7069 14 1 7.1320 -0.4746 2.0864 15 6 9.2052 -1.0565 2.0631 16 7 9.1255 -1.8372 3.1099 17 14 10.7701 -1.0179 1.0439 18 1 11.7351 -0.0684 1.6542 19 1 11.3693 -2.3761 1.0052 20 1 10.4501 -0.5785 -0.3381 21 6 5.9314 -0.8030 0.0020 22 6 4.7644 -1.4854 0.0017 23 6 3.5362 -0.7843 0.0010 24 7 2.2675 -1.1461 0.0011 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5140 27 1 -0.3633 -0.8900 -0.5139 28 1 1.8834 2.1189 0.0004 29 1 4.8385 2.4302 0.0102 30 1 8.7240 3.8361 -1.4820 31 1 10.6084 3.1509 -0.0597 32 1 10.3605 1.2308 1.4625 33 1 9.8789 -2.3962 3.3566 34 1 6.8619 -1.3514 0.0024 35 1 4.7700 -2.5654 0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241604771.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:51 Heat of formation + Delta-G solvation = 123.920815 kcal Electronic energy + Delta-G solvation = -20398.955548 eV Core-core repulsion = 17363.167914 eV Total energy + Delta-G solvation = -3035.787634 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78272 -38.79887 -36.51388 -34.10349 -32.70948 -31.50436 -31.07493 -30.46685 -27.99848 -26.86289 -25.43736 -23.07370 -21.84887 -21.53196 -20.26649 -20.02847 -17.59141 -16.91447 -16.48272 -15.89939 -15.43424 -15.35103 -14.68619 -14.11286 -13.60352 -13.47667 -13.41223 -12.94056 -12.91457 -12.70571 -12.43027 -12.36630 -12.10920 -11.56966 -11.27502 -11.04919 -10.82959 -10.75253 -10.35562 -9.94718 -9.77791 -9.74252 -9.54564 -8.54765 -8.23305 -8.04816 -7.84162 -7.13988 -6.81662 -4.61451 1.09145 2.10744 2.51949 2.61131 2.71243 2.98280 2.98864 3.11826 3.19902 3.82176 4.39740 4.46117 4.54116 4.82285 5.00815 5.16407 5.25929 5.33863 5.48367 5.54297 5.78135 5.97118 6.08048 6.09466 6.21029 6.26886 6.39511 6.57995 6.71277 6.82347 6.94783 7.03866 7.16906 7.23206 7.30883 7.44322 7.53240 7.66688 7.77039 8.06819 8.15826 8.39766 8.55740 9.38785 9.84921 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022202 B = 0.005408 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.850637 B = 5176.527630 C = 6147.317975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.337 5.337 3 C 0.056 3.944 4 C -0.191 4.191 5 C -0.052 4.052 6 C -0.013 4.013 7 C 0.040 3.960 8 N -0.444 5.444 9 C -0.041 4.041 10 C -0.123 4.123 11 C -0.207 4.207 12 C 0.060 3.940 13 C -0.421 4.421 14 H 0.105 0.895 15 C 0.084 3.916 16 N -0.786 5.786 17 Si 0.907 3.093 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.244 1.244 21 C -0.029 4.029 22 C -0.131 4.131 23 C 0.107 3.893 24 N -0.324 5.324 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.179 0.821 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.289 0.711 34 H 0.139 0.861 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.116 3.098 -3.985 10.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.112 5.112 3 C -0.098 4.098 4 C -0.200 4.200 5 C -0.073 4.073 6 C -0.016 4.016 7 C -0.100 4.100 8 N -0.151 5.151 9 C -0.200 4.200 10 C -0.143 4.143 11 C -0.233 4.233 12 C 0.055 3.945 13 C -0.449 4.449 14 H 0.122 0.878 15 C -0.138 4.138 16 N -0.408 5.408 17 Si 0.733 3.267 18 H -0.194 1.194 19 H -0.213 1.213 20 H -0.167 1.167 21 C -0.051 4.051 22 C -0.153 4.153 23 C -0.046 4.046 24 N -0.151 5.151 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.196 0.804 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.157 0.843 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.725 2.149 -4.321 11.760 hybrid contribution 2.016 0.474 0.431 2.115 sum -8.709 2.623 -3.890 9.892 Atomic orbital electron populations 1.21923 0.74490 1.04567 1.03580 1.48301 1.06976 1.04222 1.51728 1.22528 0.90635 0.92786 1.03879 1.19554 0.92836 0.93567 1.14056 1.20498 0.88845 0.98647 0.99339 1.18011 0.90851 0.91937 1.00757 1.19462 0.94412 0.97596 0.98565 1.67126 1.23261 1.05683 1.19041 1.21667 0.90306 1.03159 1.04824 1.21348 0.98629 0.97295 0.97013 1.21104 0.99085 0.99075 1.03989 1.18434 0.91359 0.93550 0.91168 1.19519 0.97465 1.07271 1.20612 0.87769 1.26246 1.00163 0.93778 0.93646 1.69691 1.33097 1.18518 1.19531 0.86364 0.80337 0.77123 0.82887 1.19385 1.21277 1.16662 1.20979 0.97917 0.93664 0.92584 1.19653 0.88175 0.98871 1.08551 1.21016 0.92045 0.93034 0.98477 1.77528 1.01375 1.04278 1.31968 0.90430 0.89361 0.89109 0.80420 0.86219 0.85741 0.87923 0.87346 0.89988 0.84333 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.79 11.38 59.84 0.68 1.47 16 2 N -0.34 -4.82 3.95 -67.53 -0.27 -5.08 16 3 C 0.06 0.81 11.52 -16.50 -0.19 0.61 16 4 C -0.19 -3.53 6.32 -105.23 -0.66 -4.19 16 5 C -0.05 -1.04 9.69 -38.60 -0.37 -1.41 16 6 C -0.01 -0.29 5.25 -104.98 -0.55 -0.84 16 7 C 0.04 0.96 6.38 -82.26 -0.53 0.43 16 8 N -0.44 -10.30 10.13 -9.19 -0.09 -10.39 16 9 C -0.04 -0.88 11.16 -17.36 -0.19 -1.07 16 10 C -0.12 -2.58 10.03 -39.83 -0.40 -2.98 16 11 C -0.21 -4.81 7.25 -38.99 -0.28 -5.09 16 12 C 0.06 1.47 5.09 -106.40 -0.54 0.93 16 13 C -0.42 -10.58 7.14 -37.96 -0.27 -10.85 16 14 H 0.10 2.78 6.71 -52.49 -0.35 2.43 16 15 C 0.08 2.03 5.41 -17.33 -0.09 1.94 16 16 N -0.79 -19.50 13.93 55.55 0.77 -18.73 16 17 Si 0.91 19.43 24.53 -169.99 -4.17 15.26 16 18 H -0.27 -5.57 6.68 56.52 0.38 -5.19 16 19 H -0.29 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.24 -5.42 6.88 56.52 0.39 -5.03 16 21 C -0.03 -0.60 7.68 -39.62 -0.30 -0.91 16 22 C -0.13 -2.58 10.05 -39.46 -0.40 -2.98 16 23 C 0.11 2.11 7.49 -82.97 -0.62 1.49 16 24 N -0.32 -5.93 12.53 33.30 0.42 -5.52 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.09 0.46 8.13 -51.92 -0.42 0.04 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 30 H 0.13 2.27 8.06 -52.48 -0.42 1.84 16 31 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 32 H 0.11 2.45 4.77 -52.49 -0.25 2.20 16 33 H 0.29 6.48 8.30 -40.82 -0.34 6.15 16 34 H 0.14 2.97 6.67 -52.49 -0.35 2.62 16 35 H 0.12 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 298.73 15.07 4.50 4.50 Total: -1.00 -30.10 298.73 -7.07 -37.17 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -3.51 Total: 6.24 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -4.73 Total: -23.45 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.83 Total: -39.72 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.17 Total: 15.26 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.10 -7.07 -37.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241604771.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.093 kcal (2) G-P(sol) polarization free energy of solvation -30.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds