Wall clock time and date at job start Fri Apr 10 2020 17:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.33950 * 125.00481 * 2 1 4 4 C 1.38583 * 107.81354 * 179.97438 * 3 2 1 5 5 C 1.40632 * 134.66218 * 180.29796 * 4 3 2 6 6 C 1.38442 * 119.32348 * 180.17544 * 5 4 3 7 7 C 1.47545 * 119.40771 * 179.73692 * 6 5 4 8 8 N 1.32724 * 120.00431 * 315.80583 * 7 6 5 9 9 C 1.31667 * 121.70470 * 179.72773 * 8 7 6 10 10 C 1.38933 * 121.52247 * 0.58656 * 9 8 7 11 11 C 1.36834 * 119.82675 * 359.42724 * 10 9 8 12 12 C 1.41141 * 118.40541 * 0.27059 * 11 10 9 13 13 C 1.40801 * 120.73053 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00254 * 150.73097 * 13 12 11 15 15 C 1.39977 * 119.99624 * 330.73645 * 13 12 11 16 16 N 1.30830 * 120.00223 * 161.38819 * 15 13 12 17 17 Si 1.86801 * 120.00080 * 341.38995 * 15 13 12 18 18 H 1.48496 * 109.47205 * 95.22461 * 17 15 13 19 19 H 1.48501 * 109.47186 * 215.22549 * 17 15 13 20 20 H 1.48502 * 109.47024 * 335.22633 * 17 15 13 21 21 C 1.40993 * 121.18500 * 359.46146 * 6 5 4 22 22 C 1.35193 * 121.66074 * 0.29835 * 21 6 5 23 23 C 1.41419 * 119.96174 * 359.97438 * 22 21 6 24 24 N 1.31929 * 134.36098 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47178 * 270.00403 * 1 2 3 26 26 H 1.09007 * 109.46665 * 30.00656 * 1 2 3 27 27 H 1.09002 * 109.47011 * 149.99920 * 1 2 3 28 28 H 1.08001 * 126.08989 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.33376 * 359.93479 * 5 4 3 30 30 H 1.08003 * 119.23998 * 180.28719 * 9 8 7 31 31 H 1.08006 * 120.08921 * 179.69207 * 10 9 8 32 32 H 1.07997 * 120.80161 * 180.29851 * 11 10 9 33 33 H 0.97000 * 120.00345 * 179.97438 * 16 15 13 34 34 H 1.08000 * 119.17052 * 180.27148 * 21 6 5 35 35 H 1.08004 * 120.02115 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2333 1.0972 0.0000 4 6 3.5573 0.6876 0.0006 5 6 4.7973 1.3510 0.0061 6 6 5.9645 0.6065 0.0011 7 6 7.2665 1.3007 0.0009 8 7 7.4629 2.3429 -0.7970 9 6 8.6092 2.9901 -0.8204 10 6 9.6766 2.6063 -0.0182 11 6 9.5426 1.5398 0.8285 12 6 8.3095 0.8535 0.8539 13 6 8.1178 -0.2502 1.7069 14 1 7.1320 -0.4746 2.0864 15 6 9.2052 -1.0565 2.0631 16 7 9.1255 -1.8372 3.1099 17 14 10.7701 -1.0179 1.0439 18 1 11.7351 -0.0684 1.6542 19 1 11.3693 -2.3761 1.0052 20 1 10.4501 -0.5785 -0.3381 21 6 5.9314 -0.8030 0.0020 22 6 4.7644 -1.4854 0.0017 23 6 3.5362 -0.7843 0.0010 24 7 2.2675 -1.1461 0.0011 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5140 27 1 -0.3633 -0.8900 -0.5139 28 1 1.8834 2.1189 0.0004 29 1 4.8385 2.4302 0.0102 30 1 8.7240 3.8361 -1.4820 31 1 10.6084 3.1509 -0.0597 32 1 10.3605 1.2308 1.4625 33 1 9.8789 -2.3962 3.3566 34 1 6.8619 -1.3514 0.0024 35 1 4.7700 -2.5654 0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241604771.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:50 Heat of formation + Delta-G solvation = 105.275676 kcal Electronic energy + Delta-G solvation = -20399.764062 eV Core-core repulsion = 17363.167914 eV Total energy + Delta-G solvation = -3036.596148 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.09770 -40.50705 -37.97834 -35.89689 -34.02027 -33.23253 -32.50174 -32.02230 -29.45067 -28.07092 -27.17657 -24.54568 -23.40782 -23.12265 -21.84435 -21.36762 -19.41002 -18.41101 -17.68574 -17.47775 -17.08016 -16.47189 -16.34730 -15.69505 -15.18981 -15.05095 -14.80181 -14.44104 -14.23153 -13.91714 -13.88668 -13.80606 -13.55407 -13.22131 -12.90945 -12.68531 -12.33367 -12.18740 -12.03278 -11.67454 -11.33603 -11.17709 -11.16204 -10.26624 -9.95652 -9.69299 -9.36677 -8.94423 -8.30628 -6.46633 -0.27665 0.44488 0.78652 1.12609 1.24786 1.39560 1.47082 1.56358 1.59283 2.08116 2.62738 2.96222 3.28432 3.58326 3.78428 3.86086 4.19534 4.28240 4.31292 4.40242 4.44547 4.51053 4.61162 4.63258 4.69510 4.71634 4.77054 4.91981 5.08363 5.22870 5.33175 5.54911 5.59721 5.62550 5.75494 5.96911 6.00076 6.01167 6.09491 6.29386 6.61684 6.70458 6.71514 7.63300 8.10390 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022202 B = 0.005408 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.850637 B = 5176.527630 C = 6147.317975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.323 5.323 3 C 0.097 3.903 4 C -0.230 4.230 5 C -0.031 4.031 6 C -0.058 4.058 7 C 0.034 3.966 8 N -0.461 5.461 9 C -0.033 4.033 10 C -0.124 4.124 11 C -0.220 4.220 12 C 0.040 3.960 13 C -0.443 4.443 14 H 0.071 0.929 15 C 0.054 3.946 16 N -0.827 5.827 17 Si 0.956 3.044 18 H -0.252 1.252 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.040 4.040 22 C -0.139 4.139 23 C 0.085 3.915 24 N -0.355 5.355 25 H 0.097 0.903 26 H 0.131 0.869 27 H 0.095 0.905 28 H 0.236 0.764 29 H 0.129 0.871 30 H 0.163 0.837 31 H 0.144 0.856 32 H 0.112 0.888 33 H 0.297 0.703 34 H 0.119 0.881 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.697 5.666 -5.198 13.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.097 5.097 3 C -0.061 4.061 4 C -0.240 4.240 5 C -0.052 4.052 6 C -0.060 4.060 7 C -0.106 4.106 8 N -0.169 5.169 9 C -0.192 4.192 10 C -0.143 4.143 11 C -0.245 4.245 12 C 0.035 3.965 13 C -0.472 4.472 14 H 0.089 0.911 15 C -0.164 4.164 16 N -0.451 5.451 17 Si 0.780 3.220 18 H -0.177 1.177 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.063 4.063 22 C -0.161 4.161 23 C -0.066 4.066 24 N -0.184 5.184 25 H 0.115 0.885 26 H 0.149 0.851 27 H 0.114 0.886 28 H 0.252 0.748 29 H 0.147 0.853 30 H 0.180 0.820 31 H 0.162 0.838 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.137 0.863 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.336 4.686 -5.525 14.306 hybrid contribution 2.142 -0.117 0.695 2.255 sum -10.194 4.569 -4.829 12.171 Atomic orbital electron populations 1.22520 0.70616 1.07021 1.05639 1.48881 1.09086 1.03252 1.48466 1.23340 0.88814 0.94862 0.99034 1.19827 0.94256 0.93106 1.16810 1.20601 0.88987 0.98872 0.96743 1.18070 0.91168 0.92269 1.04513 1.19771 0.95054 0.97681 0.98069 1.67230 1.24442 1.06064 1.19174 1.22427 0.89536 1.03068 1.04144 1.21756 1.00297 0.96506 0.95764 1.21317 0.98635 0.99820 1.04776 1.18628 0.92620 0.93757 0.91453 1.19306 0.96480 1.08954 1.22455 0.91103 1.26785 1.02177 0.93241 0.94162 1.69710 1.34401 1.20087 1.20938 0.85621 0.77858 0.77911 0.80636 1.17709 1.20049 1.18304 1.20778 0.97625 0.93737 0.94116 1.19725 0.88495 0.99295 1.08537 1.21089 0.92390 0.93978 0.99168 1.77479 1.01044 1.06442 1.33456 0.88462 0.85065 0.88634 0.74826 0.85297 0.82011 0.83817 0.87031 0.89188 0.86309 0.85380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 11.38 127.77 1.45 2.40 16 2 N -0.32 -8.11 3.95 -367.55 -1.45 -9.56 16 3 C 0.10 2.39 11.52 84.45 0.97 3.37 16 4 C -0.23 -8.28 6.32 -20.26 -0.13 -8.41 16 5 C -0.03 -1.23 9.69 22.90 0.22 -1.01 16 6 C -0.06 -2.67 5.25 -20.10 -0.11 -2.78 16 7 C 0.03 1.65 6.38 42.39 0.27 1.92 16 8 N -0.46 -21.11 10.13 -183.00 -1.85 -22.96 16 9 C -0.03 -1.33 11.16 84.88 0.95 -0.38 16 10 C -0.12 -4.91 10.03 22.11 0.22 -4.69 16 11 C -0.22 -10.14 7.25 22.65 0.16 -9.97 16 12 C 0.04 2.04 5.09 -21.02 -0.11 1.94 16 13 C -0.44 -23.81 7.14 23.32 0.17 -23.64 16 14 H 0.07 4.16 6.71 -2.91 -0.02 4.14 16 15 C 0.05 2.76 5.41 85.26 0.46 3.22 16 16 N -0.83 -43.22 13.93 21.83 0.30 -42.91 16 17 Si 0.96 40.84 24.53 68.60 1.68 42.53 16 18 H -0.25 -10.01 6.68 99.48 0.66 -9.35 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.26 -11.58 6.88 99.48 0.68 -10.90 16 21 C -0.04 -1.82 7.68 22.24 0.17 -1.65 16 22 C -0.14 -5.86 10.05 22.35 0.22 -5.64 16 23 C 0.09 3.41 7.49 42.27 0.32 3.73 16 24 N -0.35 -12.70 12.53 -48.54 -0.61 -13.30 16 25 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.13 0.51 8.13 -2.38 -0.02 0.49 16 27 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.24 3.01 8.06 -2.91 -0.02 2.98 16 29 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 30 H 0.16 5.21 8.06 -2.91 -0.02 5.18 16 31 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 32 H 0.11 4.98 4.77 -2.91 -0.01 4.97 16 33 H 0.30 13.91 8.30 -92.71 -0.77 13.14 16 34 H 0.12 5.71 6.67 -2.91 -0.02 5.69 16 35 H 0.13 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -70.11 298.73 4.39 -65.73 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 1.06 Total: 22.09 kcal Atomic # 6 Polarization: -46.85 SS G_CDS: 5.25 Total: -41.60 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -3.61 Total: -88.74 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 1.68 Total: 42.53 kcal Total: -70.11 4.39 -65.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241604771.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.003 kcal (2) G-P(sol) polarization free energy of solvation -70.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds