Wall clock time and date at job start Fri Apr 10 2020 17:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.33961 * 124.99777 * 2 1 4 4 C 1.38562 * 107.80965 * 180.02562 * 3 2 1 5 5 C 1.40663 * 134.66152 * 179.97438 * 4 3 2 6 6 C 1.38363 * 119.32614 * 180.02562 * 5 4 3 7 7 C 1.47705 * 119.39888 * 179.97438 * 6 5 4 8 8 C 1.40043 * 119.46198 * 179.97438 * 7 6 5 9 9 C 1.36502 * 119.46107 * 179.97438 * 8 7 6 10 10 C 1.41355 * 118.42798 * 359.97438 * 9 8 7 11 11 C 1.40981 * 120.54251 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99743 * 155.63634 * 11 10 9 13 13 C 1.39929 * 120.00249 * 335.63596 * 11 10 9 14 14 N 1.30848 * 119.99595 * 343.04761 * 13 11 10 15 15 Si 1.86795 * 119.99862 * 163.04761 * 13 11 10 16 16 H 1.48497 * 109.47301 * 60.00152 * 15 13 11 17 17 H 1.48504 * 109.46885 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47590 * 299.99791 * 15 13 11 19 19 C 1.40980 * 118.91273 * 0.02562 * 10 9 8 20 20 N 1.31224 * 120.40739 * 359.97438 * 19 10 9 21 21 C 1.40943 * 121.20452 * 0.26133 * 6 5 4 22 22 C 1.35224 * 121.66388 * 359.46207 * 21 6 5 23 23 C 1.41399 * 119.94888 * 0.53146 * 22 21 6 24 24 N 1.31944 * 134.36637 * 179.73700 * 23 22 21 25 25 H 1.09004 * 109.46803 * 90.00878 * 1 2 3 26 26 H 1.09000 * 109.47149 * 210.00526 * 1 2 3 27 27 H 1.09000 * 109.47147 * 330.00802 * 1 2 3 28 28 H 1.07996 * 126.09304 * 0.04678 * 3 2 1 29 29 H 1.07999 * 120.34020 * 0.03243 * 5 4 3 30 30 H 1.08000 * 120.26565 * 0.02562 * 8 7 6 31 31 H 1.07998 * 120.78760 * 180.02562 * 9 8 7 32 32 H 0.96999 * 119.99607 * 180.02562 * 14 13 11 33 33 H 1.08001 * 119.79482 * 180.25303 * 19 10 9 34 34 H 1.07995 * 119.17150 * 179.72133 * 21 6 5 35 35 H 1.07999 * 120.02456 * 180.24479 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2334 1.0974 0.0000 4 6 3.5571 0.6879 -0.0006 5 6 4.7974 1.3515 -0.0013 6 6 5.9640 0.6076 -0.0023 7 6 7.2672 1.3028 -0.0037 8 6 8.4489 0.5512 -0.0041 9 6 9.6532 1.1937 -0.0059 10 6 9.6618 2.6072 -0.0078 11 6 10.8804 3.3162 -0.0102 12 1 10.9181 4.3237 -0.3974 13 6 12.0409 2.7147 0.4891 14 7 11.9525 1.6531 1.2489 15 14 13.7162 3.4272 0.0709 16 1 13.7965 4.8256 0.5639 17 1 14.7761 2.6122 0.7174 18 1 13.9082 3.4096 -1.4016 19 6 8.4319 3.2963 -0.0072 20 7 7.2993 2.6337 -0.0054 21 6 5.9316 -0.8014 -0.0081 22 6 4.7646 -1.4846 -0.0021 23 6 3.5364 -0.7839 -0.0011 24 7 2.2677 -1.1461 -0.0003 25 1 -0.3633 -0.0002 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5137 28 1 1.8834 2.1191 0.0007 29 1 4.8386 2.4307 -0.0010 30 1 8.4075 -0.5280 -0.0039 31 1 10.5776 0.6353 -0.0067 32 1 12.7570 1.2363 1.5953 33 1 8.4219 4.3763 -0.0127 34 1 6.8622 -1.3493 -0.0133 35 1 4.7707 -2.5646 -0.0028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241604844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:52 Heat of formation + Delta-G solvation = 119.831646 kcal Electronic energy + Delta-G solvation = -19640.160486 eV Core-core repulsion = 16604.195532 eV Total energy + Delta-G solvation = -3035.964954 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91683 -38.55674 -36.67655 -34.22979 -32.65289 -31.47198 -30.60175 -30.29810 -28.24736 -27.19541 -25.13647 -22.99621 -22.17160 -21.17131 -20.37332 -20.10910 -17.51416 -16.89177 -16.56549 -15.91976 -15.50749 -15.29903 -14.58743 -13.97085 -13.63256 -13.48740 -13.29340 -13.18343 -12.86904 -12.75762 -12.52410 -12.12132 -11.72281 -11.49489 -11.36437 -11.08094 -10.96507 -10.93442 -10.65883 -10.00092 -9.92536 -9.81597 -9.44697 -8.39988 -8.32328 -8.06066 -7.83556 -7.02839 -6.76711 -4.50955 0.92494 1.97667 2.48351 2.62821 2.83717 2.95023 2.97138 2.99359 3.23364 3.75678 4.25349 4.34084 4.67985 4.72950 4.91205 5.02659 5.16343 5.35601 5.43399 5.63930 5.67490 5.85957 6.00719 6.09325 6.16412 6.48208 6.63796 6.70936 6.77392 6.87621 6.92669 7.01709 7.02884 7.20076 7.33209 7.37873 7.71390 7.79864 7.90753 7.93143 8.34244 8.54421 8.64526 9.59030 9.91547 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.052961 B = 0.003236 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.559401 B = 8651.624094 C = 9098.807530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.334 5.334 3 C 0.055 3.945 4 C -0.185 4.185 5 C -0.057 4.057 6 C -0.024 4.024 7 C 0.005 3.995 8 C -0.127 4.127 9 C -0.141 4.141 10 C 0.067 3.933 11 C -0.437 4.437 12 H 0.085 0.915 13 C 0.072 3.928 14 N -0.779 5.779 15 Si 0.916 3.084 16 H -0.262 1.262 17 H -0.276 1.276 18 H -0.261 1.261 19 C -0.017 4.017 20 N -0.452 5.452 21 C -0.060 4.060 22 C -0.119 4.119 23 C 0.096 3.904 24 N -0.322 5.322 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.181 0.819 29 H 0.131 0.869 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.287 0.713 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.565 -2.154 -1.547 12.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.109 5.109 3 C -0.100 4.100 4 C -0.194 4.194 5 C -0.078 4.078 6 C -0.026 4.026 7 C -0.130 4.130 8 C -0.147 4.147 9 C -0.166 4.166 10 C 0.062 3.938 11 C -0.466 4.466 12 H 0.104 0.896 13 C -0.148 4.148 14 N -0.403 5.403 15 Si 0.739 3.261 16 H -0.187 1.187 17 H -0.201 1.201 18 H -0.185 1.185 19 C -0.182 4.182 20 N -0.159 5.159 21 C -0.083 4.083 22 C -0.140 4.140 23 C -0.057 4.057 24 N -0.150 5.150 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.198 0.802 29 H 0.149 0.851 30 H 0.120 0.880 31 H 0.144 0.856 32 H 0.098 0.902 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.214 -2.918 -1.391 14.577 hybrid contribution 2.114 0.506 -0.037 2.174 sum -12.101 -2.411 -1.428 12.421 Atomic orbital electron populations 1.21954 0.74331 1.04710 1.03662 1.48320 1.07056 1.04190 1.51381 1.22573 0.90616 0.92857 1.03922 1.19639 0.93053 0.93374 1.13372 1.20533 0.88403 0.99573 0.99310 1.18267 0.91950 0.91524 1.00839 1.18770 0.90594 0.89200 1.14389 1.21325 0.93472 0.98632 1.01275 1.21317 0.96770 0.94676 1.03885 1.18599 0.93680 0.92791 0.88702 1.19589 0.92076 1.01198 1.33698 0.89645 1.26057 1.02021 0.94289 0.92463 1.69801 1.32154 1.17168 1.21163 0.86230 0.79716 0.79990 0.80139 1.18668 1.20108 1.18545 1.22432 0.87458 0.98061 1.10246 1.66935 1.31064 1.08404 1.09521 1.20832 0.97442 0.93789 0.96211 1.19630 0.88332 0.98734 1.07332 1.20966 0.92048 0.93217 0.99474 1.77513 1.01308 1.04468 1.31696 0.90341 0.89052 0.89212 0.80230 0.85108 0.88025 0.85608 0.90229 0.85449 0.85449 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 11.38 59.85 0.68 1.37 16 2 N -0.33 -4.39 3.95 -67.52 -0.27 -4.65 16 3 C 0.05 0.73 11.52 -16.50 -0.19 0.54 16 4 C -0.18 -3.20 6.32 -105.22 -0.66 -3.87 16 5 C -0.06 -1.08 9.63 -38.62 -0.37 -1.46 16 6 C -0.02 -0.48 5.87 -104.96 -0.62 -1.10 16 7 C 0.00 0.11 6.73 -82.76 -0.56 -0.44 16 8 C -0.13 -2.93 9.36 -39.53 -0.37 -3.30 16 9 C -0.14 -3.54 8.73 -39.02 -0.34 -3.88 16 10 C 0.07 1.72 5.59 -106.63 -0.60 1.12 16 11 C -0.44 -10.82 9.06 -37.91 -0.34 -11.16 16 12 H 0.09 1.99 7.90 -52.49 -0.41 1.58 16 13 C 0.07 1.68 5.18 -17.34 -0.09 1.59 16 14 N -0.78 -18.88 10.92 55.55 0.61 -18.28 16 15 Si 0.92 17.36 29.59 -169.99 -5.03 12.33 16 16 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 17 H -0.28 -5.12 7.11 56.52 0.40 -4.71 16 18 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 19 C -0.02 -0.43 10.97 -16.77 -0.18 -0.61 16 20 N -0.45 -10.97 9.30 -9.12 -0.08 -11.06 16 21 C -0.06 -1.07 9.26 -39.63 -0.37 -1.44 16 22 C -0.12 -2.01 10.06 -39.45 -0.40 -2.41 16 23 C 0.10 1.71 7.49 -82.98 -0.62 1.09 16 24 N -0.32 -5.40 12.53 33.30 0.42 -4.98 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.39 8.13 -51.93 -0.42 -0.03 16 28 H 0.18 1.65 8.06 -52.49 -0.42 1.22 16 29 H 0.13 2.49 7.44 -52.49 -0.39 2.10 16 30 H 0.10 2.04 6.06 -52.49 -0.32 1.72 16 31 H 0.13 3.17 6.21 -52.49 -0.33 2.85 16 32 H 0.29 6.29 8.30 -40.82 -0.34 5.95 16 33 H 0.13 2.87 8.06 -52.49 -0.42 2.44 16 34 H 0.13 2.06 6.01 -52.49 -0.32 1.75 16 35 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 305.26 15.07 4.60 4.60 Total: -1.00 -30.38 305.26 -8.22 -38.60 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -3.44 Total: 7.39 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -5.03 Total: -23.95 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.67 Total: -38.97 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.38 -8.22 -38.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241604844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.430 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds