Wall clock time and date at job start Fri Apr 10 2020 17:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.33961 * 124.99777 * 2 1 4 4 C 1.38562 * 107.80965 * 180.02562 * 3 2 1 5 5 C 1.40663 * 134.66152 * 179.97438 * 4 3 2 6 6 C 1.38363 * 119.32614 * 180.02562 * 5 4 3 7 7 C 1.47705 * 119.39888 * 179.97438 * 6 5 4 8 8 C 1.40043 * 119.46198 * 179.97438 * 7 6 5 9 9 C 1.36502 * 119.46107 * 179.97438 * 8 7 6 10 10 C 1.41355 * 118.42798 * 359.97438 * 9 8 7 11 11 C 1.40981 * 120.54251 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99743 * 155.63634 * 11 10 9 13 13 C 1.39929 * 120.00249 * 335.63596 * 11 10 9 14 14 N 1.30848 * 119.99595 * 343.04761 * 13 11 10 15 15 Si 1.86795 * 119.99862 * 163.04761 * 13 11 10 16 16 H 1.48497 * 109.47301 * 60.00152 * 15 13 11 17 17 H 1.48504 * 109.46885 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47590 * 299.99791 * 15 13 11 19 19 C 1.40980 * 118.91273 * 0.02562 * 10 9 8 20 20 N 1.31224 * 120.40739 * 359.97438 * 19 10 9 21 21 C 1.40943 * 121.20452 * 0.26133 * 6 5 4 22 22 C 1.35224 * 121.66388 * 359.46207 * 21 6 5 23 23 C 1.41399 * 119.94888 * 0.53146 * 22 21 6 24 24 N 1.31944 * 134.36637 * 179.73700 * 23 22 21 25 25 H 1.09004 * 109.46803 * 90.00878 * 1 2 3 26 26 H 1.09000 * 109.47149 * 210.00526 * 1 2 3 27 27 H 1.09000 * 109.47147 * 330.00802 * 1 2 3 28 28 H 1.07996 * 126.09304 * 0.04678 * 3 2 1 29 29 H 1.07999 * 120.34020 * 0.03243 * 5 4 3 30 30 H 1.08000 * 120.26565 * 0.02562 * 8 7 6 31 31 H 1.07998 * 120.78760 * 180.02562 * 9 8 7 32 32 H 0.96999 * 119.99607 * 180.02562 * 14 13 11 33 33 H 1.08001 * 119.79482 * 180.25303 * 19 10 9 34 34 H 1.07995 * 119.17150 * 179.72133 * 21 6 5 35 35 H 1.07999 * 120.02456 * 180.24479 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2334 1.0974 0.0000 4 6 3.5571 0.6879 -0.0006 5 6 4.7974 1.3515 -0.0013 6 6 5.9640 0.6076 -0.0023 7 6 7.2672 1.3028 -0.0037 8 6 8.4489 0.5512 -0.0041 9 6 9.6532 1.1937 -0.0059 10 6 9.6618 2.6072 -0.0078 11 6 10.8804 3.3162 -0.0102 12 1 10.9181 4.3237 -0.3974 13 6 12.0409 2.7147 0.4891 14 7 11.9525 1.6531 1.2489 15 14 13.7162 3.4272 0.0709 16 1 13.7965 4.8256 0.5639 17 1 14.7761 2.6122 0.7174 18 1 13.9082 3.4096 -1.4016 19 6 8.4319 3.2963 -0.0072 20 7 7.2993 2.6337 -0.0054 21 6 5.9316 -0.8014 -0.0081 22 6 4.7646 -1.4846 -0.0021 23 6 3.5364 -0.7839 -0.0011 24 7 2.2677 -1.1461 -0.0003 25 1 -0.3633 -0.0002 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5137 28 1 1.8834 2.1191 0.0007 29 1 4.8386 2.4307 -0.0010 30 1 8.4075 -0.5280 -0.0039 31 1 10.5776 0.6353 -0.0067 32 1 12.7570 1.2363 1.5953 33 1 8.4219 4.3763 -0.0127 34 1 6.8622 -1.3493 -0.0133 35 1 4.7707 -2.5646 -0.0028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241604844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:52 Heat of formation + Delta-G solvation = 102.798697 kcal Electronic energy + Delta-G solvation = -19640.899090 eV Core-core repulsion = 16604.195532 eV Total energy + Delta-G solvation = -3036.703558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.11180 -40.31018 -38.06496 -35.96541 -33.86793 -32.88389 -32.27289 -31.91514 -29.67678 -28.33400 -26.75860 -24.41891 -23.75421 -22.71637 -21.91728 -21.36546 -19.31670 -18.23581 -17.71935 -17.50475 -16.84083 -16.47567 -16.29992 -15.57591 -15.12161 -14.78053 -14.68392 -14.52041 -14.19445 -13.90424 -13.75804 -13.49482 -13.43953 -13.17646 -12.93739 -12.56332 -12.37376 -12.28298 -12.14143 -11.68254 -11.27639 -11.18726 -11.10248 -10.20292 -9.94492 -9.79468 -9.34303 -8.75075 -8.27392 -6.36205 -0.32292 0.43685 1.05519 1.20467 1.40412 1.49112 1.52972 1.55963 1.66765 2.17935 2.64821 3.07665 3.26627 3.77227 3.81018 3.83708 4.14996 4.29160 4.35393 4.39235 4.43505 4.53794 4.68253 4.69566 4.71212 4.85554 4.88534 5.05490 5.17022 5.26708 5.38898 5.45436 5.58704 5.79104 5.82851 5.95253 5.99020 6.09660 6.11892 6.49312 6.68532 6.72072 6.79598 7.72760 8.20230 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.052961 B = 0.003236 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.559401 B = 8651.624094 C = 9098.807530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.322 5.322 3 C 0.090 3.910 4 C -0.227 4.227 5 C -0.040 4.040 6 C -0.065 4.065 7 C 0.006 3.994 8 C -0.134 4.134 9 C -0.159 4.159 10 C 0.039 3.961 11 C -0.470 4.470 12 H 0.090 0.910 13 C 0.034 3.966 14 N -0.812 5.812 15 Si 0.990 3.010 16 H -0.256 1.256 17 H -0.267 1.267 18 H -0.259 1.259 19 C -0.036 4.036 20 N -0.464 5.464 21 C -0.067 4.067 22 C -0.119 4.119 23 C 0.078 3.922 24 N -0.349 5.349 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.128 0.872 28 H 0.230 0.770 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.117 0.883 32 H 0.294 0.706 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.856 -2.016 -1.713 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.096 5.096 3 C -0.067 4.067 4 C -0.236 4.236 5 C -0.061 4.061 6 C -0.067 4.067 7 C -0.129 4.129 8 C -0.154 4.154 9 C -0.184 4.184 10 C 0.034 3.966 11 C -0.498 4.498 12 H 0.108 0.892 13 C -0.183 4.183 14 N -0.436 5.436 15 Si 0.810 3.190 16 H -0.180 1.180 17 H -0.191 1.191 18 H -0.183 1.183 19 C -0.199 4.199 20 N -0.171 5.171 21 C -0.090 4.090 22 C -0.140 4.140 23 C -0.074 4.074 24 N -0.178 5.178 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.146 0.854 28 H 0.246 0.754 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.135 0.865 32 H 0.105 0.895 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.544 -2.794 -1.555 16.851 hybrid contribution 2.340 0.417 0.023 2.377 sum -14.204 -2.377 -1.532 14.483 Atomic orbital electron populations 1.22522 0.70660 1.06961 1.05711 1.48874 1.09075 1.03252 1.48378 1.23308 0.89138 0.94792 0.99485 1.19854 0.94071 0.93455 1.16250 1.20574 0.89136 0.99277 0.97153 1.18287 0.90998 0.92731 1.04700 1.19320 0.92150 0.89071 1.12349 1.21603 0.92904 1.00099 1.00755 1.21369 0.97165 0.94812 1.05064 1.18901 0.94546 0.93375 0.89752 1.19848 0.92876 1.01844 1.35259 0.89215 1.26922 1.05414 0.94431 0.91579 1.69845 1.33582 1.18368 1.21847 0.85117 0.74744 0.79357 0.79779 1.18006 1.19132 1.18301 1.22656 0.87547 0.98755 1.10955 1.66985 1.30858 1.09062 1.10242 1.20831 0.98401 0.92787 0.96980 1.19855 0.87946 0.99793 1.06367 1.21220 0.92724 0.93718 0.99732 1.77474 1.01076 1.06354 1.32944 0.88292 0.88494 0.85415 0.75400 0.85661 0.85457 0.86469 0.89460 0.84373 0.84497 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 11.38 127.77 1.45 2.22 16 2 N -0.32 -7.18 3.95 -367.54 -1.45 -8.63 16 3 C 0.09 2.05 11.52 84.45 0.97 3.03 16 4 C -0.23 -7.45 6.32 -20.25 -0.13 -7.57 16 5 C -0.04 -1.51 9.63 22.89 0.22 -1.29 16 6 C -0.06 -2.69 5.87 -20.08 -0.12 -2.81 16 7 C 0.01 0.31 6.73 41.89 0.28 0.59 16 8 C -0.13 -6.38 9.36 22.30 0.21 -6.17 16 9 C -0.16 -8.29 8.73 22.63 0.20 -8.10 16 10 C 0.04 2.08 5.59 -21.17 -0.12 1.96 16 11 C -0.47 -24.13 9.06 23.35 0.21 -23.92 16 12 H 0.09 4.33 7.90 -2.91 -0.02 4.31 16 13 C 0.03 1.61 5.18 85.25 0.44 2.05 16 14 N -0.81 -40.45 10.92 21.82 0.24 -40.21 16 15 Si 0.99 35.78 29.59 68.60 2.03 37.81 16 16 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 17 H -0.27 -9.14 7.11 99.48 0.71 -8.44 16 18 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 19 C -0.04 -1.85 10.97 85.46 0.94 -0.91 16 20 N -0.46 -23.24 9.30 -182.77 -1.70 -24.94 16 21 C -0.07 -2.42 9.26 22.24 0.21 -2.21 16 22 C -0.12 -3.93 10.06 22.35 0.22 -3.71 16 23 C 0.08 2.67 7.49 42.26 0.32 2.99 16 24 N -0.35 -10.91 12.53 -48.55 -0.61 -11.52 16 25 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.13 0.34 8.13 -2.39 -0.02 0.32 16 28 H 0.23 2.82 8.06 -2.91 -0.02 2.79 16 29 H 0.13 4.76 7.44 -2.91 -0.02 4.74 16 30 H 0.13 5.21 6.06 -2.91 -0.02 5.20 16 31 H 0.12 6.21 6.21 -2.91 -0.02 6.19 16 32 H 0.29 13.16 8.30 -92.71 -0.77 12.39 16 33 H 0.14 6.50 8.06 -2.91 -0.02 6.48 16 34 H 0.14 4.46 6.01 -2.91 -0.02 4.44 16 35 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -69.09 305.26 4.94 -64.15 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 1.13 Total: 27.19 kcal Atomic # 6 Polarization: -49.16 SS G_CDS: 5.31 Total: -43.85 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -3.52 Total: -85.30 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 2.03 Total: 37.81 kcal Total: -69.09 4.94 -64.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241604844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.944 kcal (2) G-P(sol) polarization free energy of solvation -69.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds