Wall clock time and date at job start Fri Apr 10 2020 17:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.33961 * 125.00981 * 2 1 4 4 C 1.38383 * 107.86595 * 179.97438 * 3 2 1 5 5 C 1.40879 * 134.67991 * 179.97438 * 4 3 2 6 6 C 1.37799 * 119.35718 * 180.02562 * 5 4 3 7 7 C 1.48283 * 119.35285 * 180.02562 * 6 5 4 8 8 C 1.40090 * 120.82849 * 359.73953 * 7 6 5 9 9 C 1.38460 * 119.41641 * 179.77417 * 8 7 6 10 10 N 1.31501 * 121.15661 * 0.51243 * 9 8 7 11 11 C 1.33663 * 121.80847 * 359.74543 * 10 9 8 12 12 C 1.41427 * 119.77885 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99753 * 179.97438 * 12 11 10 14 14 C 1.40034 * 119.99941 * 359.97358 * 12 11 10 15 15 N 1.30739 * 119.99817 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99583 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47551 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46792 * 120.00138 * 16 14 12 19 19 H 1.48504 * 109.47296 * 240.00056 * 16 14 12 20 20 C 1.39386 * 120.82229 * 180.02562 * 7 6 5 21 21 C 1.40744 * 121.29007 * 0.04432 * 6 5 4 22 22 C 1.35325 * 121.69943 * 359.95215 * 21 6 5 23 23 C 1.41285 * 119.89671 * 0.02562 * 22 21 6 24 24 N 1.32040 * 134.42153 * 180.33625 * 23 22 21 25 25 H 1.09001 * 109.47060 * 90.00488 * 1 2 3 26 26 H 1.09004 * 109.47073 * 209.99977 * 1 2 3 27 27 H 1.09000 * 109.47212 * 330.00059 * 1 2 3 28 28 H 1.08003 * 126.06183 * 359.96595 * 3 2 1 29 29 H 1.08005 * 120.32404 * 0.02562 * 5 4 3 30 30 H 1.07998 * 120.28680 * 0.02562 * 8 7 6 31 31 H 1.07999 * 119.41658 * 180.25505 * 9 8 7 32 32 H 0.97002 * 119.99174 * 179.97438 * 15 14 12 33 33 H 1.08003 * 120.59050 * 359.97438 * 20 7 6 34 34 H 1.08006 * 119.15163 * 179.97438 * 21 6 5 35 35 H 1.07996 * 120.05467 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2336 1.0972 0.0000 4 6 3.5560 0.6893 0.0006 5 6 4.7978 1.3545 0.0004 6 6 5.9604 0.6148 0.0007 7 6 7.2675 1.3151 0.0011 8 6 7.3322 2.7145 -0.0043 9 6 8.5684 3.3381 0.0010 10 7 9.6827 2.6398 0.0009 11 6 9.6765 1.3032 0.0007 12 6 10.9008 0.5951 0.0012 13 1 10.8999 -0.4849 0.0015 14 6 12.1140 1.2944 0.0012 15 7 12.1150 2.6018 0.0013 16 14 13.7310 0.3590 0.0025 17 1 13.4585 -1.1007 0.0027 18 1 14.5104 0.7164 -1.2100 19 1 14.5095 0.7179 1.2150 20 6 8.4623 0.5972 0.0008 21 6 5.9315 -0.7923 0.0001 22 6 4.7658 -1.4796 0.0003 23 6 3.5371 -0.7822 0.0005 24 7 2.2678 -1.1461 0.0063 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.8833 2.1188 -0.0005 29 1 4.8383 2.4338 0.0001 30 1 6.4258 3.3016 -0.0083 31 1 8.6183 4.4169 0.0011 32 1 12.9555 3.0860 0.0017 33 1 8.4546 -0.4828 0.0007 34 1 6.8638 -1.3377 -0.0001 35 1 4.7746 -2.5596 0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241607484.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:00 Heat of formation + Delta-G solvation = 131.809875 kcal Electronic energy + Delta-G solvation = -19691.946103 eV Core-core repulsion = 16656.500565 eV Total energy + Delta-G solvation = -3035.445539 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11506 -38.45292 -36.84004 -33.73343 -32.91416 -31.63350 -30.69419 -29.97887 -28.05985 -26.92449 -25.65815 -22.95718 -22.58932 -21.05917 -20.41914 -20.20534 -17.60868 -16.81278 -16.58773 -15.79262 -15.65671 -15.01849 -14.42586 -14.30316 -13.67474 -13.45853 -13.36899 -13.29275 -13.03132 -12.74063 -12.39354 -12.29729 -11.59243 -11.40684 -11.35844 -11.10127 -11.01207 -10.63233 -10.47468 -10.17452 -10.04139 -9.71977 -9.37273 -8.71824 -8.15165 -7.62892 -7.54086 -6.93670 -6.37783 -4.50209 0.74217 1.85340 2.32796 2.51797 2.78002 3.11160 3.14296 3.15443 3.26147 3.96673 4.18562 4.29568 4.55880 4.80422 4.81910 4.88337 5.06872 5.18906 5.35743 5.45763 5.69321 5.77683 5.95949 5.97109 6.11752 6.27517 6.49550 6.66234 6.70585 6.73137 6.82439 6.85198 7.02895 7.15571 7.20088 7.37359 7.56474 7.73381 7.77612 8.04857 8.25463 8.68291 8.94275 10.14368 10.34408 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.041486 B = 0.003439 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.764394 B = 8139.229114 C = 8798.846924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.332 5.332 3 C 0.064 3.936 4 C -0.194 4.194 5 C -0.050 4.050 6 C -0.054 4.054 7 C 0.006 3.994 8 C -0.307 4.307 9 C 0.124 3.876 10 N -0.485 5.485 11 C 0.255 3.745 12 C -0.433 4.433 13 H 0.084 0.916 14 C 0.069 3.931 15 N -0.716 5.716 16 Si 0.906 3.094 17 H -0.260 1.260 18 H -0.273 1.273 19 H -0.273 1.273 20 C -0.257 4.257 21 C -0.054 4.054 22 C -0.118 4.118 23 C 0.102 3.898 24 N -0.319 5.319 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.183 0.817 29 H 0.128 0.872 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.272 0.728 33 H 0.103 0.897 34 H 0.133 0.867 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.717 -1.971 0.049 16.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.107 5.107 3 C -0.091 4.091 4 C -0.204 4.204 5 C -0.070 4.070 6 C -0.055 4.055 7 C 0.000 4.000 8 C -0.330 4.330 9 C -0.041 4.041 10 N -0.198 5.198 11 C 0.131 3.869 12 C -0.464 4.464 13 H 0.102 0.898 14 C -0.156 4.156 15 N -0.338 5.338 16 Si 0.730 3.270 17 H -0.184 1.184 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.280 4.280 21 C -0.076 4.076 22 C -0.139 4.139 23 C -0.050 4.050 24 N -0.147 5.147 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.199 0.801 29 H 0.145 0.855 30 H 0.114 0.886 31 H 0.136 0.864 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.151 0.849 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.768 -2.415 0.054 16.941 hybrid contribution 0.243 0.004 -0.016 0.244 sum -16.525 -2.412 0.038 16.700 Atomic orbital electron populations 1.21999 0.74057 1.04888 1.03858 1.48391 1.07247 1.04175 1.50858 1.22568 0.90542 0.93015 1.02959 1.19571 0.92951 0.93570 1.14270 1.20558 0.88955 0.99211 0.98318 1.18659 0.92755 0.92448 1.01647 1.18572 0.90580 0.93059 0.97758 1.21325 0.97876 0.93482 1.20324 1.22432 0.88705 0.98744 0.94231 1.68722 1.26858 1.07265 1.16907 1.18553 0.91719 0.88344 0.88313 1.19651 0.89371 0.94255 1.43124 0.89802 1.26067 1.01056 0.94896 0.93601 1.70151 1.27557 1.07200 1.28868 0.86296 0.81270 0.80876 0.78524 1.18383 1.19866 1.19861 1.21865 0.92604 0.98553 1.15001 1.20911 0.97769 0.93828 0.95112 1.19721 0.88260 0.99049 1.06871 1.20995 0.92148 0.93052 0.98847 1.77619 1.01188 1.04334 1.31518 0.90138 0.88881 0.89085 0.80051 0.85459 0.88564 0.86427 0.91726 0.87908 0.84918 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 11.38 59.85 0.68 1.26 16 2 N -0.33 -3.96 3.95 -67.57 -0.27 -4.23 16 3 C 0.06 0.76 11.51 -16.57 -0.19 0.57 16 4 C -0.19 -3.05 6.32 -105.22 -0.67 -3.71 16 5 C -0.05 -0.85 9.50 -38.74 -0.37 -1.21 16 6 C -0.05 -1.03 5.86 -104.98 -0.62 -1.64 16 7 C 0.01 0.14 5.90 -104.64 -0.62 -0.48 16 8 C -0.31 -6.79 9.49 -38.81 -0.37 -7.16 16 9 C 0.12 2.99 11.17 -17.61 -0.20 2.80 16 10 N -0.48 -13.40 7.85 -11.21 -0.09 -13.49 16 11 C 0.26 6.98 6.55 -85.02 -0.56 6.42 16 12 C -0.43 -11.56 9.14 -37.70 -0.34 -11.91 16 13 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 14 C 0.07 1.76 5.50 -17.34 -0.10 1.66 16 15 N -0.72 -19.16 11.46 55.55 0.64 -18.52 16 16 Si 0.91 18.61 29.56 -169.99 -5.02 13.58 16 17 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 C -0.26 -6.26 9.21 -38.32 -0.35 -6.61 16 21 C -0.05 -0.94 9.29 -39.67 -0.37 -1.31 16 22 C -0.12 -1.91 10.06 -39.46 -0.40 -2.31 16 23 C 0.10 1.72 7.49 -83.00 -0.62 1.10 16 24 N -0.32 -5.02 12.54 33.29 0.42 -4.60 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 0.30 8.13 -51.93 -0.42 -0.12 16 28 H 0.18 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.13 1.96 6.18 -52.48 -0.32 1.64 16 30 H 0.10 1.83 6.25 -52.49 -0.33 1.50 16 31 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 32 H 0.27 6.55 8.29 -40.82 -0.34 6.22 16 33 H 0.10 2.28 6.24 -52.48 -0.33 1.95 16 34 H 0.13 2.19 6.16 -52.48 -0.32 1.87 16 35 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 304.59 15.07 4.59 4.59 Total: -1.00 -32.95 304.59 -8.20 -41.15 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -3.38 Total: 4.05 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -5.08 Total: -22.54 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.70 Total: -40.84 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.58 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.95 -8.20 -41.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241607484.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.959 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds