Wall clock time and date at job start Fri Apr 10 2020 17:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.33961 * 125.00981 * 2 1 4 4 C 1.38383 * 107.86595 * 179.97438 * 3 2 1 5 5 C 1.40879 * 134.67991 * 179.97438 * 4 3 2 6 6 C 1.37799 * 119.35718 * 180.02562 * 5 4 3 7 7 C 1.48283 * 119.35285 * 180.02562 * 6 5 4 8 8 C 1.40090 * 120.82849 * 359.73953 * 7 6 5 9 9 C 1.38460 * 119.41641 * 179.77417 * 8 7 6 10 10 N 1.31501 * 121.15661 * 0.51243 * 9 8 7 11 11 C 1.33663 * 121.80847 * 359.74543 * 10 9 8 12 12 C 1.41427 * 119.77885 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99753 * 179.97438 * 12 11 10 14 14 C 1.40034 * 119.99941 * 359.97358 * 12 11 10 15 15 N 1.30739 * 119.99817 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99583 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47551 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46792 * 120.00138 * 16 14 12 19 19 H 1.48504 * 109.47296 * 240.00056 * 16 14 12 20 20 C 1.39386 * 120.82229 * 180.02562 * 7 6 5 21 21 C 1.40744 * 121.29007 * 0.04432 * 6 5 4 22 22 C 1.35325 * 121.69943 * 359.95215 * 21 6 5 23 23 C 1.41285 * 119.89671 * 0.02562 * 22 21 6 24 24 N 1.32040 * 134.42153 * 180.33625 * 23 22 21 25 25 H 1.09001 * 109.47060 * 90.00488 * 1 2 3 26 26 H 1.09004 * 109.47073 * 209.99977 * 1 2 3 27 27 H 1.09000 * 109.47212 * 330.00059 * 1 2 3 28 28 H 1.08003 * 126.06183 * 359.96595 * 3 2 1 29 29 H 1.08005 * 120.32404 * 0.02562 * 5 4 3 30 30 H 1.07998 * 120.28680 * 0.02562 * 8 7 6 31 31 H 1.07999 * 119.41658 * 180.25505 * 9 8 7 32 32 H 0.97002 * 119.99174 * 179.97438 * 15 14 12 33 33 H 1.08003 * 120.59050 * 359.97438 * 20 7 6 34 34 H 1.08006 * 119.15163 * 179.97438 * 21 6 5 35 35 H 1.07996 * 120.05467 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2336 1.0972 0.0000 4 6 3.5560 0.6893 0.0006 5 6 4.7978 1.3545 0.0004 6 6 5.9604 0.6148 0.0007 7 6 7.2675 1.3151 0.0011 8 6 7.3322 2.7145 -0.0043 9 6 8.5684 3.3381 0.0010 10 7 9.6827 2.6398 0.0009 11 6 9.6765 1.3032 0.0007 12 6 10.9008 0.5951 0.0012 13 1 10.8999 -0.4849 0.0015 14 6 12.1140 1.2944 0.0012 15 7 12.1150 2.6018 0.0013 16 14 13.7310 0.3590 0.0025 17 1 13.4585 -1.1007 0.0027 18 1 14.5104 0.7164 -1.2100 19 1 14.5095 0.7179 1.2150 20 6 8.4623 0.5972 0.0008 21 6 5.9315 -0.7923 0.0001 22 6 4.7658 -1.4796 0.0003 23 6 3.5371 -0.7822 0.0005 24 7 2.2678 -1.1461 0.0063 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.8833 2.1188 -0.0005 29 1 4.8383 2.4338 0.0001 30 1 6.4258 3.3016 -0.0083 31 1 8.6183 4.4169 0.0011 32 1 12.9555 3.0860 0.0017 33 1 8.4546 -0.4828 0.0007 34 1 6.8638 -1.3377 -0.0001 35 1 4.7746 -2.5596 0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241607484.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:59 Heat of formation + Delta-G solvation = 112.090825 kcal Electronic energy + Delta-G solvation = -19692.801186 eV Core-core repulsion = 16656.500565 eV Total energy + Delta-G solvation = -3036.300621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.19804 -40.16196 -38.21084 -35.50040 -34.19769 -32.79777 -32.16538 -31.80042 -29.25568 -28.12962 -27.41453 -24.23738 -24.09377 -22.58782 -21.93301 -21.41851 -19.29010 -17.89407 -17.80067 -17.52917 -16.61627 -16.52219 -16.04875 -15.80879 -15.18561 -14.79437 -14.71055 -14.33462 -14.25799 -13.98258 -13.90755 -13.52292 -13.08731 -12.91447 -12.84495 -12.57492 -12.46068 -12.40534 -12.02174 -11.60284 -11.37224 -11.16504 -11.14527 -10.20991 -9.53696 -9.44809 -9.44273 -8.28536 -8.25328 -6.47857 -0.39343 0.44119 0.95171 1.35018 1.41973 1.51186 1.51645 1.57519 1.68614 2.25304 2.81364 3.06019 3.18786 3.71509 3.94155 4.03078 4.11210 4.18725 4.28536 4.34088 4.42572 4.48092 4.55154 4.67357 4.70872 4.77212 4.93180 5.05798 5.18445 5.25869 5.36037 5.47848 5.57459 5.61392 5.69674 5.89506 5.97882 6.05449 6.22756 6.34869 6.62575 6.77890 7.01062 8.24988 8.49670 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.041486 B = 0.003439 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.764394 B = 8139.229114 C = 8798.846924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.322 5.322 3 C 0.104 3.896 4 C -0.234 4.234 5 C -0.020 4.020 6 C -0.100 4.100 7 C 0.015 3.985 8 C -0.300 4.300 9 C 0.104 3.896 10 N -0.525 5.525 11 C 0.225 3.775 12 C -0.473 4.473 13 H 0.087 0.913 14 C 0.023 3.977 15 N -0.759 5.759 16 Si 0.987 3.013 17 H -0.255 1.255 18 H -0.266 1.266 19 H -0.266 1.266 20 C -0.283 4.283 21 C -0.065 4.065 22 C -0.123 4.123 23 C 0.083 3.917 24 N -0.352 5.352 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.131 0.869 28 H 0.238 0.762 29 H 0.145 0.855 30 H 0.133 0.867 31 H 0.140 0.860 32 H 0.278 0.722 33 H 0.110 0.890 34 H 0.127 0.873 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.016 -1.307 0.056 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.095 5.095 3 C -0.053 4.053 4 C -0.244 4.244 5 C -0.041 4.041 6 C -0.102 4.102 7 C 0.008 3.992 8 C -0.323 4.323 9 C -0.060 4.060 10 N -0.239 5.239 11 C 0.100 3.900 12 C -0.504 4.504 13 H 0.105 0.895 14 C -0.198 4.198 15 N -0.381 5.381 16 Si 0.807 3.193 17 H -0.178 1.178 18 H -0.191 1.191 19 H -0.191 1.191 20 C -0.305 4.305 21 C -0.087 4.087 22 C -0.144 4.144 23 C -0.069 4.069 24 N -0.181 5.181 25 H 0.118 0.882 26 H 0.114 0.886 27 H 0.149 0.851 28 H 0.254 0.746 29 H 0.163 0.837 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.088 0.912 33 H 0.128 0.872 34 H 0.145 0.855 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.122 -1.771 0.061 20.200 hybrid contribution 0.738 -0.126 -0.022 0.749 sum -19.384 -1.897 0.040 19.477 Atomic orbital electron populations 1.22555 0.70532 1.07079 1.05808 1.48947 1.09210 1.03345 1.47964 1.23394 0.88877 0.95007 0.98068 1.19836 0.94254 0.93202 1.17060 1.20732 0.88792 0.99851 0.94680 1.18529 0.91918 0.93140 1.06588 1.18927 0.91600 0.93425 0.95199 1.21687 0.98503 0.93757 1.18370 1.22912 0.88983 0.99861 0.94220 1.68651 1.28797 1.07759 1.18669 1.18973 0.93086 0.88886 0.89039 1.19988 0.90498 0.94654 1.45267 0.89536 1.26989 1.04511 0.95755 0.92509 1.70249 1.28853 1.08880 1.30122 0.85099 0.76042 0.79381 0.78787 1.17805 1.19080 1.19069 1.21987 0.92838 0.99137 1.16576 1.20834 0.98124 0.93525 0.96191 1.19836 0.88155 0.99774 1.06601 1.21186 0.92572 0.94014 0.99095 1.77584 1.01045 1.06441 1.33014 0.88212 0.88630 0.85095 0.74616 0.83737 0.84907 0.84252 0.91165 0.87244 0.85493 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 11.38 127.77 1.45 2.02 16 2 N -0.32 -6.24 3.95 -367.69 -1.45 -7.69 16 3 C 0.10 1.92 11.51 84.40 0.97 2.89 16 4 C -0.23 -6.65 6.32 -20.25 -0.13 -6.78 16 5 C -0.02 -0.64 9.50 22.81 0.22 -0.42 16 6 C -0.10 -3.84 5.86 -20.10 -0.12 -3.96 16 7 C 0.01 0.67 5.90 -19.88 -0.12 0.55 16 8 C -0.30 -13.18 9.49 22.77 0.22 -12.97 16 9 C 0.10 5.10 11.17 84.80 0.95 6.05 16 10 N -0.52 -30.32 7.85 -189.39 -1.49 -31.80 16 11 C 0.23 12.98 6.55 40.19 0.26 13.24 16 12 C -0.47 -26.64 9.14 23.49 0.21 -26.43 16 13 H 0.09 4.58 7.85 -2.91 -0.02 4.55 16 14 C 0.02 1.24 5.50 85.29 0.47 1.70 16 15 N -0.76 -42.28 11.46 21.84 0.25 -42.03 16 16 Si 0.99 39.38 29.56 68.60 2.03 41.41 16 17 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 18 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 19 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 20 C -0.28 -14.49 9.21 23.09 0.21 -14.28 16 21 C -0.06 -2.32 9.29 22.21 0.21 -2.11 16 22 C -0.12 -4.01 10.06 22.35 0.22 -3.78 16 23 C 0.08 2.68 7.49 42.21 0.32 2.99 16 24 N -0.35 -10.29 12.54 -48.61 -0.61 -10.90 16 25 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.13 -0.02 8.13 -2.39 -0.02 -0.04 16 28 H 0.24 1.62 8.06 -2.91 -0.02 1.59 16 29 H 0.15 3.92 6.18 -2.91 -0.02 3.91 16 30 H 0.13 4.71 6.25 -2.91 -0.02 4.69 16 31 H 0.14 5.98 8.06 -2.91 -0.02 5.96 16 32 H 0.28 13.91 8.29 -92.71 -0.77 13.14 16 33 H 0.11 5.22 6.24 -2.91 -0.02 5.20 16 34 H 0.13 4.51 6.16 -2.91 -0.02 4.49 16 35 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -77.02 304.59 5.21 -71.82 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 1.13 Total: 20.48 kcal Atomic # 6 Polarization: -46.63 SS G_CDS: 5.35 Total: -41.28 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -3.30 Total: -92.42 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -77.02 5.21 -71.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241607484.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.907 kcal (2) G-P(sol) polarization free energy of solvation -77.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds