Wall clock time and date at job start Fri Apr 10 2020 17:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30219 * 124.93032 * 2 1 4 4 C 1.35581 * 109.71138 * 179.97438 * 3 2 1 5 5 C 1.40053 * 133.38620 * 179.97438 * 4 3 2 6 6 C 1.36181 * 120.08559 * 179.69015 * 5 4 3 7 7 C 1.40230 * 120.51360 * 0.56332 * 6 5 4 8 8 C 1.47644 * 119.94068 * 179.73220 * 7 6 5 9 9 N 1.32668 * 120.00012 * 136.00934 * 8 7 6 10 10 C 1.31703 * 121.71243 * 180.02562 * 9 8 7 11 11 C 1.38899 * 121.51903 * 359.97438 * 10 9 8 12 12 C 1.36870 * 119.81319 * 0.02562 * 11 10 9 13 13 C 1.41130 * 118.40168 * 0.02562 * 12 11 10 14 14 C 1.40828 * 120.72210 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00354 * 151.27250 * 14 13 12 16 16 C 1.40052 * 119.99973 * 331.27163 * 14 13 12 17 17 N 1.30785 * 120.00096 * 161.10435 * 16 14 13 18 18 Si 1.86803 * 119.99907 * 341.10558 * 16 14 13 19 19 H 1.48497 * 109.46983 * 95.20988 * 18 16 14 20 20 H 1.48495 * 109.47038 * 215.20998 * 18 16 14 21 21 H 1.48500 * 109.47066 * 335.21226 * 18 16 14 22 22 C 1.39463 * 120.11718 * 359.45544 * 7 6 5 23 23 C 1.38415 * 119.56478 * 0.25368 * 22 7 6 24 24 N 1.35947 * 124.93208 * 179.97438 * 2 1 3 25 25 H 0.97002 * 126.36716 * 0.02626 * 24 2 1 26 26 H 1.08996 * 109.47504 * 89.97729 * 1 2 3 27 27 H 1.09000 * 109.47191 * 209.98293 * 1 2 3 28 28 H 1.09005 * 109.47074 * 329.97911 * 1 2 3 29 29 H 1.07994 * 119.96003 * 359.97438 * 5 4 3 30 30 H 1.08001 * 119.74301 * 180.29343 * 6 5 4 31 31 H 1.08001 * 119.24276 * 179.97438 * 10 9 8 32 32 H 1.07996 * 120.09545 * 180.27778 * 11 10 9 33 33 H 1.08005 * 120.79663 * 180.02562 * 12 11 10 34 34 H 0.96998 * 120.00368 * 179.97438 * 17 16 14 35 35 H 1.08002 * 120.21672 * 180.23255 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2526 1.0676 0.0000 4 6 3.5609 0.7117 0.0006 5 6 4.7564 1.4413 0.0004 6 6 5.9529 0.7911 0.0075 7 6 6.0018 -0.6104 0.0032 8 6 7.3060 -1.3023 0.0050 9 7 7.5022 -2.3459 0.8003 10 6 8.6520 -2.9876 0.8295 11 6 9.7186 -2.6033 0.0271 12 6 9.5845 -1.5344 -0.8173 13 6 8.3504 -0.8502 -0.8432 14 6 8.1586 0.2556 -1.6939 15 1 7.1716 0.4846 -2.0678 16 6 9.2479 1.0585 -2.0549 17 7 9.1678 1.8365 -3.1031 18 14 10.8152 1.0181 -1.0394 19 1 11.7759 0.0641 -1.6495 20 1 11.4184 2.3746 -1.0058 21 1 10.4973 0.5833 0.3445 22 6 4.8205 -1.3517 0.0030 23 6 3.6020 -0.6951 0.0018 24 7 2.2854 -1.1145 0.0005 25 1 1.9744 -2.0333 0.0006 26 1 -0.3634 0.0004 -1.0276 27 1 -0.3633 -0.8901 0.5136 28 1 -0.3633 0.8898 0.5142 29 1 4.7293 2.5209 -0.0008 30 1 6.8714 1.3592 0.0121 31 1 8.7681 -3.8321 1.4927 32 1 10.6498 -3.1488 0.0663 33 1 10.4034 -1.2222 -1.4485 34 1 9.9220 2.3929 -3.3530 35 1 4.8563 -2.4312 0.0035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243962803.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:34 Heat of formation + Delta-G solvation = 88.555439 kcal Electronic energy + Delta-G solvation = -20428.789514 eV Core-core repulsion = 17391.468322 eV Total energy + Delta-G solvation = -3037.321192 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.64190 -38.88364 -36.58042 -34.16127 -32.78011 -31.71403 -31.47053 -30.29943 -29.14843 -26.97611 -25.51466 -22.76752 -22.07500 -21.34708 -20.55617 -20.32811 -17.65197 -17.35947 -16.80503 -15.80712 -15.39379 -15.15603 -14.68528 -14.14944 -13.77842 -13.41309 -13.30121 -13.12600 -12.93377 -12.73336 -12.49388 -12.36462 -12.16487 -11.59982 -11.38613 -11.07206 -10.94893 -10.80644 -10.38886 -10.24392 -9.97363 -9.60072 -9.55580 -8.61172 -8.28878 -8.07801 -7.77261 -7.21105 -7.19512 -4.67814 1.36047 2.09916 2.36347 2.59155 2.94802 3.04929 3.16027 3.19370 3.24678 3.77654 4.35180 4.40558 4.50989 4.95900 5.22940 5.27593 5.38372 5.42695 5.55463 5.77617 5.87678 5.92411 5.93545 6.07028 6.15035 6.17959 6.33807 6.52154 6.69931 6.75971 6.88531 7.00646 7.14901 7.22151 7.39423 7.45196 7.59494 7.68247 7.70678 8.09553 8.27103 8.33103 8.49339 9.31385 9.78692 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022361 B = 0.005405 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.907403 B = 5179.032203 C = 6145.843776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.257 3.743 3 N -0.493 5.493 4 C 0.035 3.965 5 C -0.078 4.078 6 C -0.089 4.089 7 C 0.043 3.957 8 C 0.029 3.971 9 N -0.441 5.441 10 C -0.043 4.043 11 C -0.119 4.119 12 C -0.207 4.207 13 C 0.063 3.937 14 C -0.418 4.418 15 H 0.106 0.894 16 C 0.083 3.917 17 N -0.782 5.782 18 Si 0.908 3.092 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.243 1.243 22 C -0.111 4.111 23 C 0.047 3.953 24 N -0.602 5.602 25 H 0.417 0.583 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.123 0.877 30 H 0.141 0.859 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.291 0.709 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.266 -3.215 3.791 9.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.010 4.010 3 N -0.214 5.214 4 C -0.083 4.083 5 C -0.098 4.098 6 C -0.110 4.110 7 C 0.040 3.960 8 C -0.111 4.111 9 N -0.148 5.148 10 C -0.202 4.202 11 C -0.139 4.139 12 C -0.233 4.233 13 C 0.057 3.943 14 C -0.445 4.445 15 H 0.123 0.877 16 C -0.139 4.139 17 N -0.403 5.403 18 Si 0.734 3.266 19 H -0.193 1.193 20 H -0.212 1.212 21 H -0.166 1.166 22 C -0.133 4.133 23 C -0.061 4.061 24 N -0.215 5.215 25 H 0.254 0.746 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.141 0.859 30 H 0.159 0.841 31 H 0.143 0.857 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.101 0.899 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.098 -2.386 4.116 10.267 hybrid contribution 1.744 -1.094 -0.418 2.100 sum -7.354 -3.480 3.698 8.937 Atomic orbital electron populations 1.20259 0.84907 1.04086 1.03687 1.23384 0.95286 0.81440 1.00876 1.70234 1.01458 1.27634 1.22122 1.19030 0.91550 0.90409 1.07328 1.19840 0.88941 0.99271 1.01739 1.20978 0.97762 0.93703 0.98538 1.18087 0.90251 0.92037 0.95580 1.19348 0.94184 0.97982 0.99570 1.67083 1.23370 1.05510 1.18814 1.21659 0.90220 1.03340 1.04982 1.21363 0.98646 0.97132 0.96757 1.21117 0.99015 0.99049 1.04073 1.18387 0.91268 0.93532 0.91085 1.19588 0.97481 1.07103 1.20341 0.87669 1.26277 1.00283 0.93720 0.93639 1.69667 1.33151 1.18278 1.19248 0.86350 0.80199 0.77218 0.82855 1.19331 1.21168 1.16624 1.19953 0.88087 0.99117 1.06115 1.18756 0.84901 0.95262 1.07165 1.42893 1.05117 1.09278 1.64215 0.74559 0.89912 0.90705 0.88989 0.85861 0.84115 0.85661 0.87799 0.87229 0.89851 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.51 36.01 0.38 -0.24 16 2 C 0.26 3.70 8.08 -154.82 -1.25 2.45 16 3 N -0.49 -9.02 11.27 -8.14 -0.09 -9.12 16 4 C 0.03 0.69 7.23 -84.59 -0.61 0.07 16 5 C -0.08 -1.54 10.03 -39.64 -0.40 -1.94 16 6 C -0.09 -1.87 7.77 -39.57 -0.31 -2.18 16 7 C 0.04 0.95 5.25 -104.85 -0.55 0.39 16 8 C 0.03 0.70 6.42 -82.25 -0.53 0.17 16 9 N -0.44 -10.16 10.15 -9.19 -0.09 -10.26 16 10 C -0.04 -0.91 11.16 -17.36 -0.19 -1.11 16 11 C -0.12 -2.47 10.03 -39.83 -0.40 -2.87 16 12 C -0.21 -4.75 7.26 -38.98 -0.28 -5.04 16 13 C 0.06 1.52 5.11 -106.41 -0.54 0.98 16 14 C -0.42 -10.41 7.21 -37.92 -0.27 -10.68 16 15 H 0.11 2.78 6.68 -52.49 -0.35 2.43 16 16 C 0.08 2.01 5.41 -17.32 -0.09 1.91 16 17 N -0.78 -19.16 13.93 55.55 0.77 -18.39 16 18 Si 0.91 19.19 24.53 -169.99 -4.17 15.02 16 19 H -0.27 -5.47 6.68 56.52 0.38 -5.09 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.24 -5.35 6.88 56.52 0.39 -4.96 16 22 C -0.11 -2.21 9.67 -39.06 -0.38 -2.59 16 23 C 0.05 0.88 7.29 -83.99 -0.61 0.27 16 24 N -0.60 -8.68 6.24 -8.01 -0.05 -8.73 16 25 H 0.42 4.38 8.96 -40.82 -0.37 4.02 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 30 H 0.14 3.01 6.74 -52.49 -0.35 2.65 16 31 H 0.13 2.26 8.06 -52.49 -0.42 1.83 16 32 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.11 2.44 4.72 -52.48 -0.25 2.19 16 34 H 0.29 6.42 8.30 -40.82 -0.34 6.08 16 35 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 297.26 15.07 4.48 4.48 Total: -1.00 -29.43 297.26 -8.65 -38.08 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -3.45 Total: 9.31 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -6.05 Total: -20.39 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.54 Total: -46.49 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.17 Total: 15.02 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.43 -8.65 -38.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243962803.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.635 kcal (2) G-P(sol) polarization free energy of solvation -29.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds