Wall clock time and date at job start Fri Apr 10 2020 17:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31259 * 119.79732 * 2 1 4 4 C 1.33079 * 121.71210 * 179.97438 * 3 2 1 5 5 C 1.47828 * 119.45159 * 179.97438 * 4 3 2 6 6 C 1.39983 * 119.97123 * 179.74383 * 5 4 3 7 7 C 1.37591 * 120.27386 * 179.76087 * 6 5 4 8 8 C 1.39142 * 120.22832 * 0.51583 * 7 6 5 9 9 N 1.38678 * 120.02664 * 179.76120 * 8 7 6 10 10 C 1.40583 * 119.94760 * 359.74825 * 8 7 6 11 11 C 1.43204 * 120.13811 * 179.97438 * 10 8 7 12 12 N 7.17870 * 99.62710 * 0.02562 * 2 1 3 13 13 C 1.39313 * 119.97464 * 0.02562 * 5 4 3 14 14 C 1.39977 * 121.08658 * 0.02562 * 4 3 2 15 15 C 1.36542 * 119.46745 * 0.25463 * 14 4 3 16 16 C 1.40955 * 119.79540 * 179.97438 * 2 1 3 17 17 C 1.41021 * 120.54784 * 0.05094 * 16 2 1 18 18 H 1.07998 * 119.99961 * 334.43487 * 17 16 2 19 19 C 1.39981 * 119.99707 * 154.43914 * 17 16 2 20 20 N 1.30820 * 120.00160 * 343.35314 * 19 17 16 21 21 Si 1.86804 * 119.99740 * 163.35191 * 19 17 16 22 22 H 1.48500 * 109.47053 * 94.65832 * 21 19 17 23 23 H 1.48495 * 109.46970 * 214.66105 * 21 19 17 24 24 H 1.48508 * 109.47046 * 334.66164 * 21 19 17 25 25 H 1.09002 * 109.47189 * 89.99883 * 1 2 3 26 26 H 1.09000 * 109.47434 * 210.00577 * 1 2 3 27 27 H 1.09009 * 109.47168 * 330.00195 * 1 2 3 28 28 H 1.07996 * 119.86217 * 0.02588 * 6 5 4 29 29 H 1.08002 * 119.88297 * 180.27931 * 7 6 5 30 30 H 0.97001 * 120.00425 * 179.97438 * 9 8 7 31 31 H 0.97003 * 120.00055 * 359.97438 * 9 8 7 32 32 H 1.08001 * 120.11514 * 0.02562 * 13 5 4 33 33 H 1.08010 * 120.26132 * 179.97438 * 14 4 3 34 34 H 1.08000 * 120.78465 * 179.70690 * 15 14 4 35 35 H 0.97003 * 119.99177 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1592 1.1391 0.0000 4 6 3.4893 1.1835 0.0005 5 6 4.1727 2.4943 -0.0001 6 6 5.5713 2.5538 0.0059 7 6 6.2138 3.7704 0.0004 8 6 5.4779 4.9513 -0.0003 9 7 6.1299 6.1753 -0.0008 10 6 4.0729 4.9027 -0.0007 11 6 3.3115 6.1155 -0.0009 12 7 2.7075 7.0776 0.0032 13 6 3.4244 3.6694 -0.0006 14 6 4.2517 0.0096 0.0005 15 6 3.6205 -1.2012 -0.0053 16 6 2.2074 -1.2232 0.0005 17 6 1.5096 -2.4487 0.0000 18 1 0.5089 -2.5005 0.4029 19 6 2.1141 -3.5980 -0.5226 20 7 3.1659 -3.4911 -1.2931 21 14 1.4189 -5.2844 -0.1196 22 1 0.4874 -5.7060 -1.1965 23 1 2.5290 -6.2649 -0.0133 24 1 0.6875 -5.2227 1.1714 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8901 0.5138 28 1 6.1483 1.6409 0.0104 29 1 7.2932 3.8089 0.0004 30 1 5.6165 6.9983 -0.0017 31 1 7.0993 6.2084 -0.0004 32 1 2.3453 3.6247 -0.0002 33 1 5.3305 0.0612 0.0005 34 1 4.1878 -2.1202 -0.0101 35 1 3.5844 -4.2876 -1.6555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244108594.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:53 Heat of formation + Delta-G solvation = 52.341616 kcal Electronic energy + Delta-G solvation = -19757.992360 eV Core-core repulsion = 16719.100818 eV Total energy + Delta-G solvation = -3038.891541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.84981 -39.90653 -37.43493 -36.27621 -35.41526 -33.45179 -32.53153 -32.08828 -29.80352 -28.68487 -26.45816 -24.79382 -23.90984 -22.29616 -22.00754 -19.53771 -19.11339 -17.95932 -17.78025 -17.31664 -16.35742 -16.34404 -15.39033 -15.23688 -15.12823 -14.84272 -14.73765 -14.46745 -14.09464 -13.90608 -13.66415 -13.60622 -13.39512 -13.24863 -13.01712 -12.87905 -12.58635 -12.43553 -12.16932 -12.06378 -11.61933 -11.46167 -11.10550 -10.08696 -9.86586 -9.83336 -9.47373 -8.70448 -8.24379 -6.27983 -0.00584 0.28237 1.03940 1.21132 1.42683 1.53901 1.59324 1.60999 2.05335 2.20544 2.73138 2.88744 2.98446 3.13627 3.79673 3.82677 3.98489 4.30935 4.35060 4.57067 4.64527 4.69390 4.78874 4.95580 5.00527 5.06653 5.15025 5.19661 5.23234 5.33587 5.38570 5.58129 5.73764 5.83313 5.95187 6.06173 6.15282 6.43534 6.47609 6.56733 6.78869 6.87026 6.88888 7.81816 8.25654 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032463 B = 0.003840 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.321589 B = 7289.655155 C = 8067.568664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.016 4.016 3 N -0.471 5.471 4 C 0.013 3.987 5 C -0.075 4.075 6 C -0.038 4.038 7 C -0.182 4.182 8 C 0.266 3.734 9 N -0.851 5.851 10 C -0.133 4.133 11 C 0.284 3.716 12 N -0.474 5.474 13 C -0.019 4.019 14 C -0.136 4.136 15 C -0.159 4.159 16 C 0.041 3.959 17 C -0.467 4.467 18 H 0.091 0.909 19 C 0.036 3.964 20 N -0.814 5.814 21 Si 0.983 3.017 22 H -0.263 1.263 23 H -0.266 1.266 24 H -0.256 1.256 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.144 0.856 29 H 0.169 0.831 30 H 0.399 0.601 31 H 0.419 0.581 32 H 0.116 0.884 33 H 0.134 0.866 34 H 0.116 0.884 35 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.772 6.810 1.878 11.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.160 4.160 3 N -0.180 5.180 4 C -0.123 4.123 5 C -0.078 4.078 6 C -0.058 4.058 7 C -0.204 4.204 8 C 0.154 3.846 9 N -0.389 5.389 10 C -0.142 4.142 11 C -0.028 4.028 12 N -0.151 5.151 13 C -0.041 4.041 14 C -0.156 4.156 15 C -0.184 4.184 16 C 0.037 3.963 17 C -0.496 4.496 18 H 0.109 0.891 19 C -0.181 4.181 20 N -0.438 5.438 21 Si 0.803 3.197 22 H -0.188 1.188 23 H -0.191 1.191 24 H -0.180 1.180 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.162 0.838 29 H 0.187 0.813 30 H 0.227 0.773 31 H 0.251 0.749 32 H 0.134 0.866 33 H 0.152 0.848 34 H 0.133 0.867 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.562 8.934 1.733 11.833 hybrid contribution 0.287 -1.768 -0.097 1.794 sum 7.849 7.166 1.636 10.754 Atomic orbital electron populations 1.20224 0.89354 1.01462 1.01080 1.21469 0.96663 0.88030 1.09812 1.66849 1.09665 1.30283 1.11184 1.19306 0.88812 0.92312 1.11889 1.18275 0.93320 0.90144 1.06050 1.21392 0.92210 0.99044 0.93167 1.20684 1.01036 0.88872 1.09841 1.17662 0.88547 0.87999 0.90422 1.42320 1.10509 1.04047 1.82052 1.15401 0.90582 0.86647 1.21589 1.25752 0.92821 0.92484 0.91789 1.81214 1.08792 1.12293 1.12830 1.20888 0.99690 0.89685 0.93863 1.21572 1.00252 0.92594 1.01162 1.21361 0.94773 0.97262 1.05020 1.18725 0.93279 0.94028 0.90289 1.19882 1.02473 0.92841 1.34389 0.89089 1.26824 0.94316 1.05097 0.91818 1.69837 1.18609 1.33665 1.21730 0.85164 0.78928 0.75598 0.79969 1.18814 1.19077 1.17989 0.92668 0.91286 0.92281 0.83792 0.81324 0.77264 0.74890 0.86622 0.84810 0.86651 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.66 9.79 71.23 0.70 -1.96 16 2 C -0.02 -0.80 6.86 43.31 0.30 -0.50 16 3 N -0.47 -22.63 9.28 -171.00 -1.59 -24.21 16 4 C 0.01 0.55 6.73 41.92 0.28 0.83 16 5 C -0.07 -2.63 5.88 -20.06 -0.12 -2.75 16 6 C -0.04 -0.99 9.39 22.54 0.21 -0.78 16 7 C -0.18 -3.54 9.85 22.33 0.22 -3.32 16 8 C 0.27 5.61 6.76 38.85 0.26 5.88 16 9 N -0.85 -12.00 8.97 -50.80 -0.46 -12.46 16 10 C -0.13 -3.70 5.75 -21.20 -0.12 -3.82 16 11 C 0.28 8.36 14.07 88.33 1.24 9.60 16 12 N -0.47 -15.20 18.54 19.01 0.35 -14.84 16 13 C -0.02 -0.65 9.27 22.79 0.21 -0.44 16 14 C -0.14 -5.93 9.38 22.29 0.21 -5.72 16 15 C -0.16 -7.88 8.73 22.64 0.20 -7.69 16 16 C 0.04 2.13 5.58 -21.17 -0.12 2.01 16 17 C -0.47 -23.25 8.46 23.38 0.20 -23.05 16 18 H 0.09 4.28 6.26 -2.91 -0.02 4.27 16 19 C 0.04 1.68 5.18 85.27 0.44 2.13 16 20 N -0.81 -39.39 10.96 21.83 0.24 -39.15 16 21 Si 0.98 35.11 29.59 68.60 2.03 37.14 16 22 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 23 H -0.27 -9.10 7.11 99.48 0.71 -8.39 16 24 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 25 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.07 2.73 6.25 -2.39 -0.01 2.72 16 27 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 28 H 0.14 3.33 6.12 -2.91 -0.02 3.31 16 29 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 30 H 0.40 5.87 7.66 -92.71 -0.71 5.16 16 31 H 0.42 3.18 8.83 -92.71 -0.82 2.36 16 32 H 0.12 4.35 7.50 -2.91 -0.02 4.33 16 33 H 0.13 4.74 6.13 -2.91 -0.02 4.72 16 34 H 0.12 5.84 6.27 -2.91 -0.02 5.82 16 35 H 0.29 12.70 8.30 -92.71 -0.77 11.93 16 Total: -1.00 -61.63 308.00 4.34 -57.29 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -0.35 Total: 25.82 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 4.11 Total: -29.59 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -1.45 Total: -90.66 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 2.03 Total: 37.14 kcal Total: -61.63 4.34 -57.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244108594.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.627 kcal (2) G-P(sol) polarization free energy of solvation -61.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds