Wall clock time and date at job start Fri Apr 10 2020 17:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39031 * 120.00135 * 2 1 4 4 C 1.38942 * 119.64918 * 359.97438 * 3 2 1 5 5 C 1.39456 * 118.95021 * 179.76273 * 4 3 2 6 6 C 1.48351 * 120.86621 * 180.25766 * 5 4 3 7 7 C 1.39804 * 119.53835 * 0.26718 * 6 5 4 8 8 C 1.37729 * 121.17329 * 180.02562 * 7 6 5 9 9 C 1.39565 * 120.18572 * 359.97438 * 8 7 6 10 10 C 1.43204 * 120.45199 * 180.02562 * 9 8 7 11 11 N 9.93219 * 74.38822 * 0.19595 * 2 1 3 12 12 C 1.46517 * 119.08820 * 0.02562 * 9 8 7 13 13 C 1.40830 * 120.55287 * 180.02562 * 12 9 8 14 14 H 1.08004 * 120.00448 * 24.36576 * 13 12 9 15 15 C 1.40248 * 120.00032 * 204.37350 * 13 12 9 16 16 N 1.30660 * 119.99983 * 17.28356 * 15 13 12 17 17 Si 1.86795 * 120.00143 * 197.28812 * 15 13 12 18 18 H 1.48503 * 109.47271 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46940 * 119.99788 * 17 15 13 20 20 H 1.48501 * 109.47184 * 239.99690 * 17 15 13 21 21 C 1.38584 * 119.53342 * 180.02562 * 6 5 4 22 22 C 1.39989 * 118.26833 * 0.51848 * 5 4 3 23 23 C 1.37806 * 119.18541 * 359.45836 * 22 5 4 24 24 N 1.32013 * 120.98537 * 0.30061 * 23 22 5 25 25 H 1.08996 * 109.47238 * 59.99192 * 1 2 3 26 26 H 1.08997 * 109.47009 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46618 * 299.99639 * 1 2 3 28 28 H 0.97003 * 120.00105 * 180.02562 * 2 1 3 29 29 H 1.08000 * 120.52278 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.41061 * 359.97438 * 7 6 5 31 31 H 1.08002 * 119.90732 * 179.97438 * 8 7 6 32 32 H 0.96996 * 120.00146 * 184.50959 * 16 15 13 33 33 H 1.08001 * 120.13453 * 359.97121 * 21 6 5 34 34 H 1.08004 * 120.41028 * 179.73152 * 22 5 4 35 35 H 1.08004 * 119.51117 * 180.27473 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2040 0.0000 4 6 1.4582 2.4030 -0.0005 5 6 2.1701 3.6022 0.0045 6 6 1.4638 4.9067 0.0099 7 6 0.0660 4.9336 0.0155 8 6 -0.6241 6.1255 0.0201 9 6 0.0684 7.3373 0.0197 10 6 -0.6434 8.5799 0.0249 11 7 -1.2079 9.5657 0.0327 12 6 1.5334 7.3205 0.0138 13 6 2.2632 8.5250 0.0137 14 1 1.8159 9.4275 0.4035 15 6 3.5707 8.5527 -0.4927 16 7 3.9950 7.5835 -1.2594 17 14 4.7057 9.9751 -0.0711 18 1 3.9906 10.9354 0.8074 19 1 5.9057 9.4584 0.6348 20 1 5.1234 10.6620 -1.3197 21 6 2.1988 6.0815 0.0143 22 6 3.5688 3.5428 -0.0012 23 6 4.1891 2.3123 -0.0002 24 7 3.4845 1.1959 0.0001 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.9501 -0.8401 -0.0004 29 1 0.3782 2.4063 -0.0014 30 1 -0.4824 4.0032 0.0155 31 1 -1.7041 6.1225 0.0240 32 1 4.9184 7.5687 -1.5562 33 1 3.2782 6.0458 0.0143 34 1 4.1545 4.4502 -0.0019 35 1 5.2679 2.2604 -0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244974370.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:05 Heat of formation + Delta-G solvation = 66.067732 kcal Electronic energy + Delta-G solvation = -19979.099239 eV Core-core repulsion = 16940.802907 eV Total energy + Delta-G solvation = -3038.296332 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.13104 -39.37901 -37.12599 -36.53687 -35.90767 -34.05099 -31.81228 -30.77029 -30.51774 -27.70800 -26.87621 -25.21070 -23.76187 -22.48931 -22.01041 -19.61313 -19.04239 -18.11226 -17.67628 -16.98823 -16.49804 -15.82401 -15.59193 -15.55180 -15.01845 -14.94180 -14.80558 -14.56255 -14.41606 -14.05673 -13.63538 -13.48903 -13.42373 -13.10165 -12.93789 -12.83362 -12.71080 -12.60782 -12.14603 -11.79018 -11.36662 -11.30568 -11.05242 -10.68315 -10.35010 -9.52171 -9.04897 -8.78950 -8.55210 -6.53147 -0.22206 0.53473 0.93714 1.01559 1.38027 1.50125 1.53016 2.03746 2.14789 2.37708 2.39349 2.66444 3.15132 3.58786 3.69948 3.77425 3.91731 4.26813 4.34110 4.38922 4.51888 4.60764 4.66588 4.73574 4.93383 4.98510 5.01913 5.03804 5.09804 5.21144 5.43981 5.54007 5.72268 5.77377 5.92732 6.08931 6.14611 6.20993 6.43756 6.64671 6.72310 6.76161 6.96638 7.33357 8.08460 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017207 B = 0.005318 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.849786 B = 5263.538302 C = 6805.195616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.729 5.729 3 C 0.387 3.613 4 C -0.235 4.235 5 C 0.038 3.962 6 C -0.026 4.026 7 C -0.223 4.223 8 C -0.026 4.026 9 C -0.207 4.207 10 C 0.305 3.695 11 N -0.530 5.530 12 C 0.126 3.874 13 C -0.462 4.462 14 H 0.069 0.931 15 C 0.048 3.952 16 N -0.783 5.783 17 Si 0.974 3.026 18 H -0.268 1.268 19 H -0.249 1.249 20 H -0.264 1.264 21 C -0.151 4.151 22 C -0.233 4.233 23 C 0.143 3.857 24 N -0.568 5.568 25 H 0.054 0.946 26 H 0.106 0.894 27 H 0.056 0.944 28 H 0.409 0.591 29 H 0.147 0.853 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.302 0.698 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.112 -14.117 1.540 14.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.363 5.363 3 C 0.151 3.849 4 C -0.259 4.259 5 C 0.030 3.970 6 C -0.027 4.027 7 C -0.242 4.242 8 C -0.047 4.047 9 C -0.213 4.213 10 C -0.003 4.003 11 N -0.210 5.210 12 C 0.121 3.879 13 C -0.489 4.489 14 H 0.087 0.913 15 C -0.173 4.173 16 N -0.406 5.406 17 Si 0.794 3.206 18 H -0.192 1.192 19 H -0.172 1.172 20 H -0.188 1.188 21 C -0.171 4.171 22 C -0.256 4.256 23 C -0.012 4.012 24 N -0.287 5.287 25 H 0.073 0.927 26 H 0.124 0.876 27 H 0.074 0.926 28 H 0.244 0.756 29 H 0.165 0.835 30 H 0.151 0.849 31 H 0.148 0.852 32 H 0.114 0.886 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.612 -13.443 1.346 13.524 hybrid contribution 0.460 1.119 -0.003 1.210 sum 1.073 -12.324 1.343 12.443 Atomic orbital electron populations 1.21786 0.77445 1.04511 1.01550 1.44295 1.06662 1.04250 1.81074 1.18488 0.88312 0.87183 0.90888 1.21554 1.01497 0.90512 1.12382 1.19246 0.93367 0.92472 0.91928 1.18747 0.93690 0.91140 0.99156 1.20511 0.92430 0.97261 1.14031 1.20694 0.98835 0.90268 0.94883 1.17239 0.91813 0.86380 1.25876 1.26000 0.91047 0.92613 0.90681 1.80998 1.12238 1.11606 1.16162 1.18653 0.88909 0.93737 0.86636 1.19886 0.98953 0.96074 1.34007 0.91296 1.26697 0.99268 1.00079 0.91290 1.69705 1.18924 1.31725 1.20246 0.85257 0.78061 0.77845 0.79415 1.19208 1.17235 1.18843 1.21453 0.99870 0.90248 1.05500 1.22097 0.94548 0.99907 1.09024 1.22595 1.00497 0.86057 0.92085 1.67131 1.06534 1.32599 1.22460 0.92692 0.87580 0.92555 0.75564 0.83534 0.84921 0.85243 0.88613 0.85408 0.85275 0.80364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.30 9.92 127.77 1.27 2.57 16 2 N -0.73 -15.16 5.89 -366.66 -2.16 -17.31 16 3 C 0.39 11.11 7.65 133.00 1.02 12.13 16 4 C -0.23 -7.20 8.70 22.73 0.20 -7.00 16 5 C 0.04 1.35 5.91 -19.87 -0.12 1.23 16 6 C -0.03 -1.06 5.86 -20.12 -0.12 -1.17 16 7 C -0.22 -8.19 9.39 22.53 0.21 -7.97 16 8 C -0.03 -1.02 9.74 22.47 0.22 -0.80 16 9 C -0.21 -9.47 5.94 -19.55 -0.12 -9.58 16 10 C 0.31 14.46 14.28 88.33 1.26 15.72 16 11 N -0.53 -25.80 18.54 19.00 0.35 -25.45 16 12 C 0.13 6.16 5.73 -19.90 -0.11 6.04 16 13 C -0.46 -23.04 8.58 23.39 0.20 -22.84 16 14 H 0.07 3.56 7.37 -2.91 -0.02 3.54 16 15 C 0.05 2.15 5.16 85.36 0.44 2.59 16 16 N -0.78 -35.37 10.95 21.88 0.24 -35.13 16 17 Si 0.97 34.97 29.60 68.60 2.03 37.00 16 18 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 19 H -0.25 -8.20 7.11 99.48 0.71 -7.49 16 20 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 21 C -0.15 -6.89 8.08 22.94 0.19 -6.70 16 22 C -0.23 -7.93 9.48 22.59 0.21 -7.71 16 23 C 0.14 4.24 11.16 84.56 0.94 5.18 16 24 N -0.57 -17.28 10.38 -193.51 -2.01 -19.29 16 25 H 0.05 0.81 7.92 -2.39 -0.02 0.79 16 26 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.82 7.93 -2.39 -0.02 0.80 16 28 H 0.41 7.28 8.95 -92.71 -0.83 6.45 16 29 H 0.15 3.89 4.91 -2.91 -0.01 3.87 16 30 H 0.13 3.95 6.18 -2.91 -0.02 3.94 16 31 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 32 H 0.30 12.01 8.30 -92.71 -0.77 11.24 16 33 H 0.13 5.87 4.33 -2.91 -0.01 5.86 16 34 H 0.13 4.53 6.28 -2.91 -0.02 4.51 16 35 H 0.18 4.04 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -58.30 308.66 4.48 -53.82 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.33 Total: 24.70 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 5.69 Total: -18.33 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -3.57 Total: -97.18 kcal Atomic # 14 Polarization: 34.97 SS G_CDS: 2.03 Total: 37.00 kcal Total: -58.30 4.48 -53.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244974370.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.883 kcal (2) G-P(sol) polarization free energy of solvation -58.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds