Wall clock time and date at job start Fri Apr 10 2020 17:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38901 * 119.23168 * 2 1 4 4 C 1.36863 * 119.84718 * 180.02562 * 3 2 1 5 5 C 1.41104 * 118.42138 * 359.97438 * 4 3 2 6 6 C 1.40767 * 120.73088 * 180.02562 * 5 4 3 7 7 H 1.07991 * 119.99774 * 152.42921 * 6 5 4 8 8 C 1.39966 * 119.99821 * 332.42535 * 6 5 4 9 9 N 1.30849 * 120.00314 * 336.56426 * 8 6 5 10 10 Si 1.86800 * 119.99968 * 156.56563 * 8 6 5 11 11 H 1.48505 * 109.47363 * 179.97438 * 10 8 6 12 12 H 1.48498 * 109.46920 * 299.99727 * 10 8 6 13 13 H 1.48498 * 109.47326 * 59.99924 * 10 8 6 14 14 C 1.42088 * 118.53841 * 0.27485 * 5 4 3 15 15 C 1.47290 * 120.01406 * 179.70770 * 14 5 4 16 16 C 1.36577 * 126.75210 * 311.84432 * 15 14 5 17 17 N 1.35807 * 109.73337 * 179.89511 * 16 15 14 18 18 H 0.96998 * 124.82457 * 180.12854 * 17 16 15 19 19 C 1.37783 * 110.35567 * 0.38503 * 17 16 15 20 20 C 1.38899 * 134.18562 * 179.76234 * 19 17 16 21 21 N 1.31755 * 120.28746 * 180.02562 * 20 19 17 22 22 C 1.32222 * 122.54051 * 0.02562 * 21 20 19 23 23 C 1.36805 * 121.23659 * 0.02562 * 22 21 20 24 24 C 1.39493 * 118.72493 * 359.96041 * 23 22 21 25 25 N 1.31704 * 119.23114 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47577 * 89.99781 * 1 2 3 27 27 H 1.09005 * 109.47176 * 210.00207 * 1 2 3 28 28 H 1.09004 * 109.46762 * 330.00161 * 1 2 3 29 29 H 1.07990 * 120.08112 * 0.02562 * 3 2 1 30 30 H 1.08005 * 120.79363 * 179.97438 * 4 3 2 31 31 H 0.97002 * 120.00094 * 354.23196 * 9 8 6 32 32 H 1.08004 * 125.13318 * 0.04318 * 16 15 14 33 33 H 1.07997 * 119.85537 * 359.97438 * 20 19 17 34 34 H 1.08003 * 119.37925 * 179.97438 * 22 21 20 35 35 H 1.07998 * 120.63707 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2121 0.0000 4 6 3.5539 1.2268 -0.0005 5 6 4.2388 -0.0069 -0.0005 6 6 5.6458 -0.0485 -0.0005 7 1 6.1610 -0.8931 0.4324 8 6 6.3771 1.0048 -0.5616 9 7 5.8264 1.7759 -1.4641 10 14 8.1393 1.3099 -0.0222 11 1 8.6886 2.4750 -0.7613 12 1 8.1693 1.5892 1.4359 13 1 8.9612 0.1077 -0.3130 14 6 3.4769 -1.2062 -0.0059 15 6 4.1585 -2.5119 -0.0126 16 6 5.1833 -2.8947 -0.8302 17 7 5.5508 -4.1692 -0.5388 18 1 6.2594 -4.6575 -0.9865 19 6 4.7703 -4.6723 0.4791 20 6 4.7160 -5.8892 1.1464 21 7 3.8342 -6.0820 2.1062 22 6 2.9726 -5.1505 2.4780 23 6 2.9523 -3.9221 1.8763 24 6 3.8642 -3.6615 0.8533 25 7 2.1502 -1.1493 -0.0005 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8901 0.5138 29 1 1.6342 2.1408 0.0004 30 1 4.0968 2.1605 -0.0010 31 1 4.9425 1.5682 -1.8054 32 1 5.6351 -2.2762 -1.5917 33 1 5.3991 -6.6812 0.8768 34 1 2.2712 -5.3638 3.2711 35 1 2.2446 -3.1682 2.1880 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245393985.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:13 Heat of formation + Delta-G solvation = 78.398974 kcal Electronic energy + Delta-G solvation = -20691.523363 eV Core-core repulsion = 17653.761753 eV Total energy + Delta-G solvation = -3037.761609 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.04288 -38.63683 -37.54789 -34.66602 -32.65491 -31.15372 -30.64366 -29.55575 -28.76099 -27.44562 -24.33144 -23.22243 -22.48628 -21.95556 -20.74502 -19.18840 -18.15037 -17.73280 -16.34847 -15.33189 -15.14101 -14.68925 -14.42076 -14.27378 -14.09747 -13.79664 -13.68037 -13.29331 -12.71597 -12.37608 -12.20452 -11.97112 -11.70167 -11.51137 -11.46356 -11.18262 -11.08405 -10.83608 -10.53976 -9.82365 -9.59013 -9.34834 -9.25019 -8.59351 -8.22022 -8.13214 -7.86898 -7.40407 -7.02028 -4.60644 1.38292 1.88848 2.34242 2.66268 3.03590 3.13376 3.23935 3.37882 3.44524 3.84758 4.33940 4.44402 4.82760 5.12825 5.19104 5.26383 5.39784 5.54322 5.79182 5.93038 5.94933 6.06029 6.11171 6.22916 6.29258 6.33969 6.42660 6.60324 6.70763 6.84550 6.89901 7.04597 7.13265 7.34950 7.41790 7.56080 7.63762 7.79368 7.84188 7.97140 8.39800 8.45745 8.59617 9.48747 9.83548 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.007396 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.245822 B = 3784.710400 C = 5412.327024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.021 4.021 3 C -0.125 4.125 4 C -0.183 4.183 5 C 0.066 3.934 6 C -0.498 4.498 7 H 0.084 0.916 8 C 0.037 3.963 9 N -0.790 5.790 10 Si 1.062 2.938 11 H -0.272 1.272 12 H -0.273 1.273 13 H -0.275 1.275 14 C 0.057 3.943 15 C -0.065 4.065 16 C 0.073 3.927 17 N -0.581 5.581 18 H 0.414 0.586 19 C 0.029 3.971 20 C 0.100 3.900 21 N -0.477 5.477 22 C 0.036 3.964 23 C -0.101 4.101 24 C -0.054 4.054 25 N -0.440 5.440 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.299 0.701 32 H 0.178 0.822 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.663 -6.083 0.921 6.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.161 4.161 3 C -0.146 4.146 4 C -0.209 4.209 5 C 0.061 3.939 6 C -0.526 4.526 7 H 0.102 0.898 8 C -0.185 4.185 9 N -0.413 5.413 10 Si 0.886 3.114 11 H -0.197 1.197 12 H -0.199 1.199 13 H -0.200 1.200 14 C -0.083 4.083 15 C -0.072 4.072 16 C -0.057 4.057 17 N -0.184 5.184 18 H 0.251 0.749 19 C -0.081 4.081 20 C -0.068 4.068 21 N -0.186 5.186 22 C -0.114 4.114 23 C -0.122 4.122 24 C -0.066 4.066 25 N -0.148 5.148 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.118 0.882 30 H 0.131 0.869 31 H 0.113 0.887 32 H 0.195 0.805 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.424 -6.573 1.090 6.813 hybrid contribution -0.513 0.637 -0.467 0.941 sum 0.911 -5.937 0.623 6.038 Atomic orbital electron populations 1.20267 0.91436 1.00855 1.00472 1.20217 0.94918 0.88370 1.12580 1.21176 0.95037 0.97333 1.01008 1.21210 0.93456 0.97868 1.08336 1.18386 0.94248 0.90943 0.90315 1.20470 0.91308 1.07003 1.33798 0.89779 1.27080 1.07056 0.91448 0.92923 1.70485 1.18462 1.34594 1.17716 0.83655 0.72678 0.77637 0.77472 1.19706 1.19852 1.19991 1.18662 0.87784 0.89748 1.12143 1.18328 0.98758 0.91999 0.98081 1.22130 0.98422 0.84206 1.00920 1.41383 1.32239 1.13043 1.31731 0.74937 1.19352 0.96645 0.97102 0.94981 1.21609 0.98414 0.93107 0.93667 1.67441 1.04490 1.33582 1.13132 1.21925 0.98578 0.89932 1.00948 1.21232 0.98079 0.97834 0.95023 1.19389 0.96197 0.93780 0.97280 1.66920 1.09674 1.29083 1.09171 0.93234 0.92562 0.92958 0.88243 0.86852 0.88694 0.80474 0.83633 0.83495 0.85227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.15 36.01 0.37 -0.92 16 2 C -0.02 -0.47 6.79 -82.40 -0.56 -1.03 16 3 C -0.13 -2.78 9.64 -39.83 -0.38 -3.16 16 4 C -0.18 -4.42 7.96 -38.99 -0.31 -4.73 16 5 C 0.07 1.64 5.29 -106.38 -0.56 1.08 16 6 C -0.50 -11.92 7.51 -37.98 -0.29 -12.21 16 7 H 0.08 1.99 6.77 -52.49 -0.36 1.64 16 8 C 0.04 0.86 5.00 -17.32 -0.09 0.78 16 9 N -0.79 -19.24 12.39 55.55 0.69 -18.55 16 10 Si 1.06 19.92 29.99 -169.99 -5.10 14.82 16 11 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 12 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 13 H -0.27 -4.84 7.11 56.52 0.40 -4.43 16 14 C 0.06 1.39 6.73 -82.29 -0.55 0.83 16 15 C -0.06 -1.40 5.38 -103.31 -0.56 -1.95 16 16 C 0.07 1.33 10.12 -16.39 -0.17 1.17 16 17 N -0.58 -8.76 6.00 -10.35 -0.06 -8.82 16 18 H 0.41 4.44 8.96 -40.82 -0.37 4.07 16 19 C 0.03 0.50 7.31 -83.97 -0.61 -0.12 16 20 C 0.10 1.55 11.25 -17.34 -0.20 1.36 16 21 N -0.48 -8.04 10.32 -13.37 -0.14 -8.18 16 22 C 0.04 0.60 11.12 -17.90 -0.20 0.40 16 23 C -0.10 -1.90 10.12 -39.63 -0.40 -2.30 16 24 C -0.05 -1.10 6.43 -104.95 -0.67 -1.77 16 25 N -0.44 -10.53 10.21 -5.50 -0.06 -10.59 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 30 H 0.11 2.77 6.68 -52.48 -0.35 2.42 16 31 H 0.30 7.52 6.62 -40.82 -0.27 7.25 16 32 H 0.18 3.11 7.76 -52.48 -0.41 2.70 16 33 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.15 2.00 8.06 -52.48 -0.42 1.57 16 35 H 0.13 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 304.39 15.07 4.59 4.59 Total: -1.00 -28.55 304.39 -8.76 -37.31 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -3.50 Total: 11.98 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -5.18 Total: -22.58 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.43 Total: -46.13 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.10 Total: 14.82 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.55 -8.76 -37.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245393985.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.710 kcal (2) G-P(sol) polarization free energy of solvation -28.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds