Wall clock time and date at job start Fri Apr 10 2020 17:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.39795 * 125.36351 * 2 1 4 4 C 1.30220 * 110.12698 * 179.97438 * 3 2 1 5 5 C 1.45953 * 107.61946 * 359.97438 * 4 3 2 6 6 C 1.39738 * 134.10128 * 179.97438 * 5 4 3 7 7 C 1.39494 * 117.94081 * 180.02562 * 6 5 4 8 8 C 1.47864 * 120.41440 * 179.97438 * 7 6 5 9 9 C 1.39175 * 120.33754 * 309.95734 * 8 7 6 10 10 C 1.38071 * 119.98286 * 180.02562 * 9 8 7 11 11 C 1.38939 * 120.67494 * 0.02562 * 10 9 8 12 12 C 1.36417 * 120.69302 * 0.02562 * 11 10 9 13 13 C 1.40758 * 119.98546 * 359.97438 * 12 11 10 14 14 C 1.40871 * 120.33390 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00090 * 153.00956 * 14 13 12 16 16 C 1.40053 * 120.00037 * 333.02025 * 14 13 12 17 17 N 1.30784 * 119.99514 * 344.47034 * 16 14 13 18 18 Si 1.86796 * 120.00418 * 164.47367 * 16 14 13 19 19 H 1.48510 * 109.47004 * 59.99509 * 18 16 14 20 20 H 1.48496 * 109.47410 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46953 * 300.00158 * 18 16 14 22 22 C 1.40198 * 119.17461 * 0.24692 * 7 6 5 23 23 N 1.31224 * 121.36622 * 359.45258 * 22 7 6 24 24 C 1.32893 * 121.85536 * 0.58663 * 23 22 7 25 25 H 1.08998 * 109.47178 * 270.02532 * 1 2 3 26 26 H 1.09001 * 109.46803 * 30.01996 * 1 2 3 27 27 H 1.08995 * 109.47765 * 150.02353 * 1 2 3 28 28 H 1.08002 * 126.18772 * 180.02562 * 4 3 2 29 29 H 1.08002 * 121.03409 * 0.04577 * 6 5 4 30 30 H 1.08000 * 120.01184 * 0.04585 * 9 8 7 31 31 H 1.08005 * 119.65956 * 180.27544 * 10 9 8 32 32 H 1.08002 * 119.65431 * 179.97438 * 11 10 9 33 33 H 1.07998 * 120.01519 * 179.97438 * 12 11 10 34 34 H 0.97001 * 119.99645 * 180.02562 * 17 16 14 35 35 H 1.08000 * 119.31706 * 179.72582 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2740 1.1400 0.0000 4 6 3.5305 0.7978 0.0005 5 6 3.5911 -0.6605 0.0016 6 6 4.6342 -1.5904 0.0020 7 6 4.3020 -2.9452 0.0025 8 6 5.3622 -3.9759 0.0024 9 6 6.4036 -3.9130 -0.9187 10 6 7.3895 -4.8797 -0.9125 11 6 7.3552 -5.9212 0.0064 12 6 6.3468 -6.0102 0.9207 13 6 5.3270 -5.0402 0.9400 14 6 4.2818 -5.1253 1.8806 15 1 3.7701 -4.2301 2.2017 16 6 3.9064 -6.3708 2.3996 17 7 4.2971 -7.4701 1.8085 18 14 2.8476 -6.4619 3.9358 19 1 1.5559 -5.7722 3.6884 20 1 2.5914 -7.8843 4.2768 21 1 3.5534 -5.8014 5.0633 22 6 2.9503 -3.3174 -0.0028 23 7 1.9943 -2.4186 0.0026 24 6 2.2565 -1.1158 0.0017 25 1 -0.3633 0.0005 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5134 28 1 4.3748 1.4712 0.0011 29 1 5.6656 -1.2702 0.0023 30 1 6.4409 -3.1082 -1.6379 31 1 8.1977 -4.8234 -1.6268 32 1 8.1347 -6.6687 -0.0038 33 1 6.3307 -6.8247 1.6298 34 1 4.0368 -8.3327 2.1677 35 1 2.6905 -4.3657 -0.0069 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245473518.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:40 Heat of formation + Delta-G solvation = 103.076543 kcal Electronic energy + Delta-G solvation = -20480.645045 eV Core-core repulsion = 17443.953535 eV Total energy + Delta-G solvation = -3036.691510 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.37804 -39.85408 -38.44241 -35.56644 -34.78739 -33.35200 -31.89018 -31.18472 -29.74550 -27.64232 -26.99277 -24.89539 -23.94240 -22.65639 -21.74952 -21.48391 -19.15546 -18.55076 -17.92575 -17.11444 -16.89440 -16.71240 -16.11472 -15.57225 -15.20342 -14.91752 -14.63417 -14.39326 -14.22307 -13.98754 -13.56734 -13.49185 -13.24621 -13.20141 -12.95529 -12.81083 -12.56564 -12.17855 -12.05013 -11.58713 -11.32042 -11.19937 -11.05783 -10.41828 -9.91880 -9.54158 -9.25953 -8.79941 -8.54841 -6.28766 -0.12908 0.22647 1.04407 1.24132 1.26178 1.36950 1.45216 1.52575 1.53363 2.18812 2.76599 2.87704 3.29823 3.40357 3.69464 3.84842 3.99253 4.16944 4.37462 4.39741 4.52622 4.53454 4.63607 4.64130 4.72020 4.81239 5.00464 5.14622 5.31425 5.33726 5.38486 5.54660 5.67191 5.72522 5.91060 6.08553 6.14854 6.25573 6.40244 6.48533 6.71710 6.94995 7.00568 7.07549 8.31889 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.006340 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.688143 B = 4415.392033 C = 5836.533128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.411 5.411 3 N -0.262 5.262 4 C 0.097 3.903 5 C -0.236 4.236 6 C -0.004 4.004 7 C -0.088 4.088 8 C -0.180 4.180 9 C -0.075 4.075 10 C -0.237 4.237 11 C -0.107 4.107 12 C -0.182 4.182 13 C 0.103 3.897 14 C -0.476 4.476 15 H 0.068 0.932 16 C 0.046 3.954 17 N -0.816 5.816 18 Si 0.961 3.039 19 H -0.267 1.267 20 H -0.265 1.265 21 H -0.264 1.264 22 C 0.184 3.816 23 N -0.528 5.528 24 C 0.273 3.727 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.243 0.757 29 H 0.160 0.840 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.289 0.711 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.863 10.281 -2.230 10.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.204 5.204 3 N -0.074 5.074 4 C -0.101 4.101 5 C -0.246 4.246 6 C -0.032 4.032 7 C -0.092 4.092 8 C -0.182 4.182 9 C -0.093 4.093 10 C -0.256 4.256 11 C -0.125 4.125 12 C -0.201 4.201 13 C 0.101 3.899 14 C -0.506 4.506 15 H 0.087 0.913 16 C -0.171 4.171 17 N -0.442 5.442 18 Si 0.783 3.217 19 H -0.191 1.191 20 H -0.189 1.189 21 H -0.188 1.188 22 C 0.017 3.983 23 N -0.243 5.243 24 C 0.035 3.965 25 H 0.092 0.908 26 H 0.124 0.876 27 H 0.104 0.896 28 H 0.259 0.741 29 H 0.178 0.822 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.855 10.810 -2.221 11.690 hybrid contribution 0.724 -1.165 0.780 1.578 sum -3.131 9.645 -1.441 10.242 Atomic orbital electron populations 1.21923 0.72409 1.05000 1.03682 1.48225 1.06918 0.99585 1.65631 1.76542 1.03360 1.07818 1.19706 1.25670 0.95352 0.91989 0.97118 1.20718 0.93679 0.95772 1.14408 1.21366 0.99223 0.89937 0.92709 1.19472 0.93755 0.93317 1.02668 1.18589 0.98211 1.00063 1.01368 1.20899 0.93392 0.98079 0.96968 1.20676 1.02205 0.98527 1.04167 1.20769 0.97792 0.97905 0.96048 1.21015 0.95467 1.01771 1.01874 1.17813 0.91561 0.90324 0.90250 1.19517 1.15806 0.93615 1.21625 0.91347 1.26508 0.96621 0.94704 0.99221 1.69817 1.37992 0.99514 1.36838 0.85551 0.78921 0.78494 0.78694 1.19142 1.18902 1.18832 1.22885 0.88041 0.97549 0.89869 1.66602 1.38263 0.99201 1.20198 1.19368 0.89977 0.88277 0.98885 0.90829 0.87592 0.89615 0.74090 0.82231 0.86307 0.86271 0.87413 0.88184 0.90054 0.82954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.55 11.43 127.77 1.46 4.01 16 2 N -0.41 -12.95 4.04 -366.39 -1.48 -14.43 16 3 N -0.26 -7.54 12.39 -53.08 -0.66 -8.20 16 4 C 0.10 2.47 12.29 86.93 1.07 3.53 16 5 C -0.24 -7.81 6.36 -20.24 -0.13 -7.93 16 6 C 0.00 -0.15 9.73 22.94 0.22 0.08 16 7 C -0.09 -3.61 4.92 -19.95 -0.10 -3.71 16 8 C -0.18 -8.07 5.54 -19.60 -0.11 -8.17 16 9 C -0.08 -3.02 9.53 22.46 0.21 -2.80 16 10 C -0.24 -9.42 10.03 22.40 0.22 -9.20 16 11 C -0.11 -4.65 9.96 22.01 0.22 -4.43 16 12 C -0.18 -9.04 8.62 22.46 0.19 -8.85 16 13 C 0.10 5.18 5.55 -21.12 -0.12 5.07 16 14 C -0.48 -24.25 7.12 23.36 0.17 -24.08 16 15 H 0.07 3.52 6.66 -2.91 -0.02 3.50 16 16 C 0.05 2.22 5.17 85.29 0.44 2.66 16 17 N -0.82 -40.84 10.98 21.85 0.24 -40.60 16 18 Si 0.96 38.15 29.59 68.60 2.03 40.18 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 22 C 0.18 7.85 9.18 85.26 0.78 8.64 16 23 N -0.53 -21.52 10.37 -191.87 -1.99 -23.51 16 24 C 0.27 10.08 7.96 134.12 1.07 11.15 16 25 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.24 3.51 8.06 -2.91 -0.02 3.49 16 29 H 0.16 4.49 8.06 -2.91 -0.02 4.46 16 30 H 0.12 4.02 8.05 -2.91 -0.02 4.00 16 31 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 32 H 0.11 4.13 8.06 -2.91 -0.02 4.11 16 33 H 0.10 5.24 6.26 -2.91 -0.02 5.22 16 34 H 0.29 13.20 8.29 -92.71 -0.77 12.43 16 35 H 0.15 6.94 7.32 -2.91 -0.02 6.92 16 Total: -1.00 -60.81 305.32 4.87 -55.94 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 1.12 Total: 24.66 kcal Atomic # 6 Polarization: -39.65 SS G_CDS: 5.61 Total: -34.04 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -3.89 Total: -86.74 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -60.81 4.87 -55.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245473518.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.016 kcal (2) G-P(sol) polarization free energy of solvation -60.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds