Wall clock time and date at job start Fri Apr 10 2020 17:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35801 * 124.82806 * 2 1 4 4 C 1.36578 * 109.73786 * 180.19442 * 3 2 1 5 5 C 1.47284 * 126.75566 * 179.89146 * 4 3 2 6 6 N 1.32807 * 120.01780 * 131.00837 * 5 4 3 7 7 C 1.31701 * 121.68544 * 179.75319 * 6 5 4 8 8 C 1.38904 * 121.53127 * 0.53564 * 7 6 5 9 9 C 1.36856 * 119.85251 * 359.47274 * 8 7 6 10 10 C 1.41101 * 118.42258 * 0.25143 * 9 8 7 11 11 C 1.40758 * 120.73211 * 179.97438 * 10 9 8 12 12 H 1.07990 * 120.00671 * 154.04525 * 11 10 9 13 13 C 1.39977 * 119.99726 * 334.04213 * 11 10 9 14 14 N 1.30846 * 120.00021 * 344.67687 * 13 11 10 15 15 Si 1.86805 * 119.99887 * 164.67490 * 13 11 10 16 16 H 1.48498 * 109.46863 * 60.00058 * 15 13 11 17 17 H 1.48501 * 109.47186 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46989 * 299.99980 * 15 13 11 19 19 C 1.46900 * 106.48893 * 359.62298 * 4 3 2 20 20 C 1.39498 * 135.18521 * 180.25150 * 19 4 3 21 21 C 1.36813 * 118.71940 * 180.02562 * 20 19 4 22 22 N 1.32213 * 121.24404 * 359.95750 * 21 20 19 23 23 C 1.31770 * 122.53573 * 0.02562 * 22 21 20 24 24 C 1.37786 * 124.81623 * 179.77407 * 2 1 3 25 25 H 1.08996 * 109.47242 * 270.22546 * 1 2 3 26 26 H 1.09001 * 109.46552 * 30.22664 * 1 2 3 27 27 H 1.08997 * 109.47386 * 150.22372 * 1 2 3 28 28 H 1.08008 * 125.12688 * 0.04308 * 3 2 1 29 29 H 1.08004 * 119.22768 * 180.26151 * 7 6 5 30 30 H 1.08003 * 120.07020 * 179.75188 * 8 7 6 31 31 H 1.08002 * 120.78925 * 180.27953 * 9 8 7 32 32 H 0.97004 * 119.99774 * 179.97438 * 14 13 11 33 33 H 1.07993 * 120.63851 * 359.95496 * 20 19 4 34 34 H 1.08003 * 119.37592 * 179.97438 * 21 20 19 35 35 H 1.08001 * 119.85706 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2406 1.1147 0.0000 4 6 3.5593 0.7592 -0.0044 5 6 4.7174 1.6691 -0.0081 6 7 5.7088 1.4861 0.8564 7 6 6.7619 2.2767 0.8788 8 6 6.8833 3.3498 0.0052 9 6 5.8981 3.5962 -0.9121 10 6 4.7743 2.7433 -0.9363 11 6 3.7323 2.9524 -1.8592 12 1 3.1134 2.1244 -2.1717 13 6 3.4982 4.2336 -2.3720 14 7 4.0287 5.2784 -1.7897 15 14 2.4284 4.4519 -3.8877 16 1 1.0688 3.9209 -3.6146 17 1 2.3379 5.8950 -4.2261 18 1 3.0285 3.7134 -5.0277 19 6 3.5951 -0.7094 0.0020 20 6 4.6022 -1.6746 0.0060 21 6 4.2466 -2.9957 0.0112 22 7 2.9768 -3.3641 0.0133 23 6 1.9867 -2.4946 0.0100 24 6 2.2517 -1.1312 0.0045 25 1 -0.3633 0.0040 1.0276 26 1 -0.3632 0.8880 -0.5174 27 1 -0.3634 -0.8919 -0.5103 28 1 1.8704 2.1294 0.0007 29 1 7.5472 2.0889 1.5961 30 1 7.7554 3.9855 0.0469 31 1 5.9790 4.4236 -1.6016 32 1 3.8668 6.1662 -2.1453 33 1 5.6425 -1.3846 0.0039 34 1 5.0177 -3.7519 0.0139 35 1 0.9646 -2.8437 0.0123 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245484518.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:42 Heat of formation + Delta-G solvation = 95.854461 kcal Electronic energy + Delta-G solvation = -20753.507157 eV Core-core repulsion = 17716.502474 eV Total energy + Delta-G solvation = -3037.004683 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.05798 -38.28475 -37.62512 -34.16944 -33.09843 -30.61468 -30.58991 -30.16439 -28.80118 -26.30361 -25.33121 -22.95082 -22.41750 -21.47245 -21.08383 -19.20577 -17.43073 -16.90618 -16.34389 -15.67526 -15.31027 -15.10348 -14.63016 -14.26232 -14.02169 -13.80925 -13.65032 -13.19762 -12.67952 -12.51390 -12.35515 -11.85385 -11.69547 -11.50492 -11.43363 -11.37131 -11.13110 -11.06607 -10.68444 -9.89526 -9.47435 -9.43535 -9.18943 -8.37829 -8.05009 -8.02457 -7.78674 -7.06452 -6.79929 -4.53914 1.45525 1.94620 2.45690 2.77667 2.93705 2.96012 3.13203 3.14289 3.48844 3.75543 4.41171 4.52825 4.82481 4.96832 5.09261 5.29252 5.31446 5.33568 5.50797 5.56598 5.77127 5.94480 6.01306 6.14441 6.24632 6.36826 6.47443 6.68283 6.81330 6.89304 7.01142 7.04371 7.19056 7.26567 7.53026 7.65358 7.73336 7.85353 7.90023 8.36343 8.46336 8.58402 8.67586 9.61080 9.95701 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015195 B = 0.007112 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.224246 B = 3936.252677 C = 5229.022614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.476 5.476 3 C 0.071 3.929 4 C -0.061 4.061 5 C 0.052 3.948 6 N -0.453 5.453 7 C -0.033 4.033 8 C -0.151 4.151 9 C -0.132 4.132 10 C 0.085 3.915 11 C -0.442 4.442 12 H 0.085 0.915 13 C 0.075 3.925 14 N -0.788 5.788 15 Si 0.909 3.091 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.055 4.055 20 C -0.100 4.100 21 C 0.034 3.966 22 N -0.478 5.478 23 C 0.099 3.901 24 C 0.031 3.969 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.177 0.823 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.284 0.716 33 H 0.131 0.869 34 H 0.147 0.853 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.773 -4.910 0.241 7.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.160 5.160 3 C -0.057 4.057 4 C -0.068 4.068 5 C -0.088 4.088 6 N -0.160 5.160 7 C -0.194 4.194 8 C -0.172 4.172 9 C -0.158 4.158 10 C 0.080 3.920 11 C -0.471 4.471 12 H 0.103 0.897 13 C -0.144 4.144 14 N -0.413 5.413 15 Si 0.733 3.267 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.186 1.186 19 C -0.067 4.067 20 C -0.120 4.120 21 C -0.116 4.116 22 N -0.187 5.187 23 C -0.068 4.068 24 C -0.078 4.078 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.194 0.806 29 H 0.137 0.863 30 H 0.115 0.885 31 H 0.143 0.857 32 H 0.096 0.904 33 H 0.148 0.852 34 H 0.165 0.835 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.262 -6.200 0.822 8.850 hybrid contribution -0.146 2.101 -1.283 2.466 sum -6.408 -4.099 -0.461 7.621 Atomic orbital electron populations 1.21910 0.77481 1.04054 1.02705 1.43420 1.05681 1.04119 1.62765 1.22140 0.89862 0.90660 1.03036 1.18358 0.91246 0.88812 1.08427 1.18721 0.93863 0.99019 0.97151 1.67112 1.00598 1.27304 1.21020 1.21655 0.97720 0.96634 1.03347 1.21418 0.99081 0.98416 0.98273 1.21369 0.92841 1.01620 0.99923 1.18331 0.92477 0.90587 0.90592 1.19467 1.13216 0.94294 1.20160 0.89683 1.25982 0.95731 0.95529 0.97169 1.69789 1.36051 0.99826 1.35606 0.86345 0.80558 0.78071 0.81764 1.18868 1.20156 1.18647 1.19404 0.91562 0.93955 1.01764 1.21234 0.99906 0.92343 0.98550 1.21909 0.92644 0.94371 1.02650 1.67435 1.00517 1.37504 1.13274 1.21540 0.98312 0.85482 1.01495 1.19326 0.91272 0.89642 1.07513 0.91501 0.89808 0.90366 0.80598 0.86300 0.88465 0.85653 0.90443 0.85157 0.83543 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 11.01 59.85 0.66 1.53 16 2 N -0.48 -7.80 3.15 -121.43 -0.38 -8.18 16 3 C 0.07 1.36 9.55 -16.39 -0.16 1.21 16 4 C -0.06 -1.37 5.36 -103.31 -0.55 -1.92 16 5 C 0.05 1.27 6.72 -82.29 -0.55 0.72 16 6 N -0.45 -11.10 10.31 -9.22 -0.10 -11.20 16 7 C -0.03 -0.75 11.16 -17.36 -0.19 -0.95 16 8 C -0.15 -3.43 10.03 -39.84 -0.40 -3.83 16 9 C -0.13 -3.26 8.73 -39.00 -0.34 -3.60 16 10 C 0.08 2.15 5.59 -106.38 -0.59 1.55 16 11 C -0.44 -10.73 7.67 -37.98 -0.29 -11.02 16 12 H 0.09 2.03 6.64 -52.49 -0.35 1.68 16 13 C 0.07 1.72 5.20 -17.32 -0.09 1.63 16 14 N -0.79 -18.71 10.94 55.55 0.61 -18.11 16 15 Si 0.91 17.29 29.59 -169.99 -5.03 12.27 16 16 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 17 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 18 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 19 C -0.05 -1.13 6.43 -104.95 -0.67 -1.81 16 20 C -0.10 -1.91 10.12 -39.63 -0.40 -2.31 16 21 C 0.03 0.58 11.12 -17.90 -0.20 0.38 16 22 N -0.48 -8.25 10.32 -13.37 -0.14 -8.39 16 23 C 0.10 1.61 11.17 -17.33 -0.19 1.41 16 24 C 0.03 0.56 6.82 -83.97 -0.57 -0.02 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 27 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 28 H 0.18 3.24 7.81 -52.48 -0.41 2.83 16 29 H 0.12 2.37 8.06 -52.48 -0.42 1.94 16 30 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 31 H 0.13 3.14 6.28 -52.49 -0.33 2.81 16 32 H 0.28 6.17 8.30 -40.82 -0.34 5.83 16 33 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 34 H 0.15 2.03 8.06 -52.48 -0.42 1.60 16 35 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 306.00 15.07 4.61 4.61 Total: -1.00 -28.88 306.00 -8.58 -37.46 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -3.60 Total: 8.56 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -4.55 Total: -17.02 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.01 Total: -45.87 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.88 -8.58 -37.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245484518.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.314 kcal (2) G-P(sol) polarization free energy of solvation -28.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds