Wall clock time and date at job start Fri Apr 10 2020 17:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35801 * 124.82806 * 2 1 4 4 C 1.36578 * 109.73786 * 180.19442 * 3 2 1 5 5 C 1.47284 * 126.75566 * 179.89146 * 4 3 2 6 6 N 1.32807 * 120.01780 * 131.00837 * 5 4 3 7 7 C 1.31701 * 121.68544 * 179.75319 * 6 5 4 8 8 C 1.38904 * 121.53127 * 0.53564 * 7 6 5 9 9 C 1.36856 * 119.85251 * 359.47274 * 8 7 6 10 10 C 1.41101 * 118.42258 * 0.25143 * 9 8 7 11 11 C 1.40758 * 120.73211 * 179.97438 * 10 9 8 12 12 H 1.07990 * 120.00671 * 154.04525 * 11 10 9 13 13 C 1.39977 * 119.99726 * 334.04213 * 11 10 9 14 14 N 1.30846 * 120.00021 * 344.67687 * 13 11 10 15 15 Si 1.86805 * 119.99887 * 164.67490 * 13 11 10 16 16 H 1.48498 * 109.46863 * 60.00058 * 15 13 11 17 17 H 1.48501 * 109.47186 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46989 * 299.99980 * 15 13 11 19 19 C 1.46900 * 106.48893 * 359.62298 * 4 3 2 20 20 C 1.39498 * 135.18521 * 180.25150 * 19 4 3 21 21 C 1.36813 * 118.71940 * 180.02562 * 20 19 4 22 22 N 1.32213 * 121.24404 * 359.95750 * 21 20 19 23 23 C 1.31770 * 122.53573 * 0.02562 * 22 21 20 24 24 C 1.37786 * 124.81623 * 179.77407 * 2 1 3 25 25 H 1.08996 * 109.47242 * 270.22546 * 1 2 3 26 26 H 1.09001 * 109.46552 * 30.22664 * 1 2 3 27 27 H 1.08997 * 109.47386 * 150.22372 * 1 2 3 28 28 H 1.08008 * 125.12688 * 0.04308 * 3 2 1 29 29 H 1.08004 * 119.22768 * 180.26151 * 7 6 5 30 30 H 1.08003 * 120.07020 * 179.75188 * 8 7 6 31 31 H 1.08002 * 120.78925 * 180.27953 * 9 8 7 32 32 H 0.97004 * 119.99774 * 179.97438 * 14 13 11 33 33 H 1.07993 * 120.63851 * 359.95496 * 20 19 4 34 34 H 1.08003 * 119.37592 * 179.97438 * 21 20 19 35 35 H 1.08001 * 119.85706 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2406 1.1147 0.0000 4 6 3.5593 0.7592 -0.0044 5 6 4.7174 1.6691 -0.0081 6 7 5.7088 1.4861 0.8564 7 6 6.7619 2.2767 0.8788 8 6 6.8833 3.3498 0.0052 9 6 5.8981 3.5962 -0.9121 10 6 4.7743 2.7433 -0.9363 11 6 3.7323 2.9524 -1.8592 12 1 3.1134 2.1244 -2.1717 13 6 3.4982 4.2336 -2.3720 14 7 4.0287 5.2784 -1.7897 15 14 2.4284 4.4519 -3.8877 16 1 1.0688 3.9209 -3.6146 17 1 2.3379 5.8950 -4.2261 18 1 3.0285 3.7134 -5.0277 19 6 3.5951 -0.7094 0.0020 20 6 4.6022 -1.6746 0.0060 21 6 4.2466 -2.9957 0.0112 22 7 2.9768 -3.3641 0.0133 23 6 1.9867 -2.4946 0.0100 24 6 2.2517 -1.1312 0.0045 25 1 -0.3633 0.0040 1.0276 26 1 -0.3632 0.8880 -0.5174 27 1 -0.3634 -0.8919 -0.5103 28 1 1.8704 2.1294 0.0007 29 1 7.5472 2.0889 1.5961 30 1 7.7554 3.9855 0.0469 31 1 5.9790 4.4236 -1.6016 32 1 3.8668 6.1662 -2.1453 33 1 5.6425 -1.3846 0.0039 34 1 5.0177 -3.7519 0.0139 35 1 0.9646 -2.8437 0.0123 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245484518.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:42 Heat of formation + Delta-G solvation = 80.253852 kcal Electronic energy + Delta-G solvation = -20754.183650 eV Core-core repulsion = 17716.502474 eV Total energy + Delta-G solvation = -3037.681176 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.43058 -40.04244 -38.98405 -35.95169 -34.48508 -32.41661 -32.20005 -31.44380 -30.26368 -27.84214 -26.82700 -24.33266 -24.01774 -23.23333 -22.52600 -20.73029 -19.22060 -18.31480 -17.70802 -17.32465 -16.74421 -16.39223 -16.18225 -15.95706 -15.40048 -15.31975 -15.05613 -14.37189 -14.28138 -14.22867 -13.59041 -13.34121 -13.22874 -13.16495 -12.95317 -12.74840 -12.68892 -12.50132 -12.20626 -11.65043 -11.20048 -10.84681 -10.56256 -10.17747 -9.86987 -9.60002 -9.37660 -8.73804 -8.36532 -6.36597 0.05274 0.55274 0.74638 1.04416 1.37941 1.48132 1.53368 1.88449 1.92491 2.16406 2.74984 3.04901 3.61868 3.70323 3.79322 3.86271 3.97876 4.14577 4.25205 4.50751 4.52578 4.55126 4.59801 4.72943 4.75679 4.81396 4.85226 5.04585 5.10217 5.23118 5.36915 5.42838 5.66155 5.74320 5.89556 5.96574 6.07740 6.18820 6.38195 6.54263 6.77457 6.85830 7.12820 7.78990 8.24687 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015195 B = 0.007112 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.224246 B = 3936.252677 C = 5229.022614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.466 5.466 3 C 0.086 3.914 4 C -0.113 4.113 5 C 0.043 3.957 6 N -0.473 5.473 7 C -0.044 4.044 8 C -0.152 4.152 9 C -0.157 4.157 10 C 0.056 3.944 11 C -0.458 4.458 12 H 0.082 0.918 13 C 0.041 3.959 14 N -0.816 5.816 15 Si 0.976 3.024 16 H -0.251 1.251 17 H -0.267 1.267 18 H -0.267 1.267 19 C -0.086 4.086 20 C -0.126 4.126 21 C 0.043 3.957 22 N -0.488 5.488 23 C 0.116 3.884 24 C 0.024 3.976 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.179 0.821 29 H 0.147 0.853 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.292 0.708 33 H 0.117 0.883 34 H 0.175 0.825 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.077 -5.964 -0.180 10.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.147 5.147 3 C -0.045 4.045 4 C -0.120 4.120 5 C -0.096 4.096 6 N -0.181 5.181 7 C -0.203 4.203 8 C -0.172 4.172 9 C -0.182 4.182 10 C 0.051 3.949 11 C -0.487 4.487 12 H 0.100 0.900 13 C -0.175 4.175 14 N -0.441 5.441 15 Si 0.797 3.203 16 H -0.175 1.175 17 H -0.192 1.192 18 H -0.192 1.192 19 C -0.098 4.098 20 C -0.146 4.146 21 C -0.105 4.105 22 N -0.197 5.197 23 C -0.052 4.052 24 C -0.085 4.085 25 H 0.105 0.895 26 H 0.115 0.885 27 H 0.123 0.877 28 H 0.196 0.804 29 H 0.164 0.836 30 H 0.144 0.856 31 H 0.134 0.866 32 H 0.103 0.897 33 H 0.135 0.865 34 H 0.192 0.808 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.577 -7.270 0.422 11.252 hybrid contribution 0.540 2.382 -1.082 2.672 sum -8.037 -4.888 -0.661 9.430 Atomic orbital electron populations 1.22368 0.73834 1.06161 1.04718 1.43689 1.07616 1.02638 1.60794 1.22118 0.89518 0.91579 1.01300 1.18483 0.91712 0.89715 1.12086 1.19159 0.94625 0.99235 0.96572 1.67190 1.01312 1.28014 1.21569 1.22173 0.98047 0.96345 1.03782 1.21683 0.99497 0.98625 0.97417 1.21421 0.93824 1.02016 1.00988 1.18701 0.93283 0.91434 0.91477 1.19545 1.13399 0.94947 1.20790 0.90023 1.26733 0.96745 0.94643 0.99421 1.69835 1.36949 1.00458 1.36815 0.85326 0.79168 0.78306 0.77539 1.17507 1.19163 1.19186 1.19646 0.93624 0.93524 1.02996 1.21257 0.99229 0.93326 1.00814 1.22282 0.93490 0.93992 1.00785 1.67577 1.00664 1.37611 1.13828 1.22208 0.99949 0.84384 0.98680 1.19523 0.90399 0.90747 1.07873 0.89460 0.88472 0.87651 0.80372 0.83577 0.85587 0.86627 0.89694 0.86542 0.80784 0.79611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.23 11.01 127.77 1.41 2.64 16 2 N -0.47 -14.33 3.15 -538.10 -1.69 -16.03 16 3 C 0.09 3.29 9.55 83.69 0.80 4.09 16 4 C -0.11 -5.15 5.36 -19.02 -0.10 -5.25 16 5 C 0.04 2.23 6.72 42.33 0.28 2.52 16 6 N -0.47 -24.03 10.31 -183.09 -1.89 -25.92 16 7 C -0.04 -2.04 11.16 84.87 0.95 -1.10 16 8 C -0.15 -7.03 10.03 22.10 0.22 -6.81 16 9 C -0.16 -8.05 8.73 22.65 0.20 -7.85 16 10 C 0.06 2.94 5.59 -21.01 -0.12 2.82 16 11 C -0.46 -22.85 7.67 23.31 0.18 -22.67 16 12 H 0.08 4.01 6.64 -2.92 -0.02 3.99 16 13 C 0.04 1.91 5.20 85.26 0.44 2.35 16 14 N -0.82 -39.35 10.94 21.83 0.24 -39.11 16 15 Si 0.98 35.02 29.59 68.60 2.03 37.05 16 16 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 17 H -0.27 -9.11 7.11 99.48 0.71 -8.40 16 18 H -0.27 -9.75 7.11 99.48 0.71 -9.05 16 19 C -0.09 -3.61 6.43 -20.08 -0.13 -3.74 16 20 C -0.13 -4.89 10.12 22.24 0.22 -4.67 16 21 C 0.04 1.42 11.12 84.30 0.94 2.36 16 22 N -0.49 -15.61 10.32 -196.21 -2.02 -17.64 16 23 C 0.12 3.37 11.17 84.86 0.95 4.32 16 24 C 0.02 0.81 6.82 39.00 0.27 1.08 16 25 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.10 1.52 8.13 -2.39 -0.02 1.50 16 27 H 0.10 1.36 8.12 -2.39 -0.02 1.34 16 28 H 0.18 6.63 7.81 -2.91 -0.02 6.61 16 29 H 0.15 5.79 8.06 -2.91 -0.02 5.77 16 30 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 31 H 0.12 6.04 6.28 -2.91 -0.02 6.02 16 32 H 0.29 12.73 8.30 -92.71 -0.77 11.96 16 33 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 34 H 0.18 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.19 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -64.83 306.00 4.29 -60.54 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 1.12 Total: 31.01 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 6.51 Total: -29.91 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -5.37 Total: -98.69 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Total: -64.83 4.29 -60.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245484518.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.794 kcal (2) G-P(sol) polarization free energy of solvation -64.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds