Wall clock time and date at job start Fri Apr 10 2020 17:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35863 * 124.83368 * 2 1 4 4 C 1.36473 * 109.74416 * 180.18608 * 3 2 1 5 5 C 1.47472 * 126.74481 * 179.83370 * 4 3 2 6 6 C 1.40171 * 119.47063 * 359.67932 * 5 4 3 7 7 C 1.36430 * 119.45859 * 179.72333 * 6 5 4 8 8 C 1.41403 * 118.43914 * 0.28327 * 7 6 5 9 9 C 1.40971 * 120.53028 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99792 * 203.76960 * 9 8 7 11 11 C 1.39908 * 120.00177 * 23.78215 * 9 8 7 12 12 N 1.30871 * 120.00233 * 17.68410 * 11 9 8 13 13 Si 1.86805 * 119.99828 * 197.68764 * 11 9 8 14 14 H 1.48501 * 109.47045 * 59.99664 * 13 11 9 15 15 H 1.48498 * 109.47027 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47036 * 299.99436 * 13 11 9 17 17 C 1.40955 * 118.93282 * 359.97438 * 8 7 6 18 18 N 1.31242 * 120.41650 * 0.02562 * 17 8 7 19 19 C 1.46863 * 106.51280 * 359.56751 * 4 3 2 20 20 C 1.39512 * 135.18716 * 180.28736 * 19 4 3 21 21 C 1.36798 * 118.72156 * 179.97438 * 20 19 4 22 22 N 1.32227 * 121.24499 * 359.97438 * 21 20 19 23 23 C 1.31756 * 122.53362 * 0.02562 * 22 21 20 24 24 C 1.37768 * 124.83211 * 179.69705 * 2 1 3 25 25 H 1.08999 * 109.46586 * 270.30330 * 1 2 3 26 26 H 1.09001 * 109.46856 * 30.30392 * 1 2 3 27 27 H 1.09001 * 109.47317 * 150.30527 * 1 2 3 28 28 H 1.08001 * 125.12962 * 0.03357 * 3 2 1 29 29 H 1.08000 * 120.27316 * 0.02562 * 6 5 4 30 30 H 1.07995 * 120.78224 * 180.29864 * 7 6 5 31 31 H 0.96992 * 119.99744 * 180.02562 * 12 11 9 32 32 H 1.07997 * 119.79403 * 179.97438 * 17 8 7 33 33 H 1.08002 * 120.63739 * 359.95189 * 20 19 4 34 34 H 1.08001 * 119.37911 * 180.02562 * 21 20 19 35 35 H 1.08006 * 119.84971 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2411 1.1152 0.0000 4 6 3.5588 0.7599 -0.0042 5 6 4.7182 1.6712 -0.0090 6 6 4.5063 3.0568 -0.0164 7 6 5.5791 3.8996 -0.0152 8 6 6.8768 3.3379 -0.0125 9 6 8.0163 4.1678 -0.0116 10 1 8.9573 3.7933 -0.3867 11 6 7.9284 5.4765 0.4754 12 7 6.9214 5.8258 1.2347 13 14 9.2483 6.7251 0.0416 14 1 9.3047 6.8939 -1.4327 15 1 8.9250 8.0280 0.6765 16 1 10.5643 6.2462 0.5358 17 6 7.0125 1.9349 -0.0106 18 7 5.9500 1.1646 -0.0120 19 6 3.5953 -0.7082 0.0036 20 6 4.6029 -1.6732 0.0091 21 6 4.2479 -2.9943 0.0166 22 7 2.9781 -3.3633 0.0190 23 6 1.9877 -2.4943 0.0141 24 6 2.2520 -1.1308 0.0060 25 1 -0.3632 0.0054 1.0277 26 1 -0.3633 0.8873 -0.5186 27 1 -0.3634 -0.8927 -0.5091 28 1 1.8711 2.1298 0.0005 29 1 3.5020 3.4540 -0.0182 30 1 5.4405 4.9707 -0.0159 31 1 6.8603 6.7332 1.5719 32 1 7.9971 1.4911 -0.0090 33 1 5.6431 -1.3828 0.0072 34 1 5.0192 -3.7502 0.0213 35 1 0.9658 -2.8440 0.0168 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245485853.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:45 Heat of formation + Delta-G solvation = 93.659652 kcal Electronic energy + Delta-G solvation = -20062.049695 eV Core-core repulsion = 17024.949839 eV Total energy + Delta-G solvation = -3037.099857 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.19027 -38.29781 -37.74459 -34.37100 -32.98971 -30.84064 -30.50265 -30.26487 -29.03329 -26.79367 -24.90525 -23.15119 -22.45089 -21.63806 -20.99491 -19.40288 -17.48928 -17.10944 -16.46527 -15.50978 -15.39120 -15.29462 -14.75929 -14.29537 -14.08236 -13.77343 -13.69543 -13.32929 -12.74522 -12.56515 -12.47660 -11.90760 -11.76703 -11.65311 -11.61860 -11.34644 -11.25637 -11.01891 -10.70269 -9.95325 -9.68536 -9.38514 -9.26195 -8.37870 -8.33928 -8.08096 -7.97316 -7.06861 -6.83806 -4.51396 1.31755 1.82483 2.28747 2.90730 2.94260 2.96921 2.97442 2.98116 3.51940 3.74978 4.30621 4.59657 4.70138 4.84677 4.95572 5.11161 5.13804 5.23241 5.35401 5.54179 5.65413 5.78454 5.87197 6.10582 6.14919 6.19991 6.51401 6.65577 6.77049 6.87473 6.90241 7.02269 7.06245 7.20046 7.38119 7.48364 7.70247 7.78989 7.88465 8.32632 8.38408 8.53771 8.63050 9.58660 9.90351 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.003981 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.739449 B = 7031.497475 C = 7820.050242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.475 5.475 3 C 0.027 3.973 4 C -0.060 4.060 5 C 0.034 3.966 6 C -0.127 4.127 7 C -0.140 4.140 8 C 0.066 3.934 9 C -0.438 4.438 10 H 0.085 0.915 11 C 0.073 3.927 12 N -0.781 5.781 13 Si 0.915 3.085 14 H -0.261 1.261 15 H -0.276 1.276 16 H -0.262 1.262 17 C -0.017 4.017 18 N -0.450 5.450 19 C -0.058 4.058 20 C -0.090 4.090 21 C 0.029 3.971 22 N -0.473 5.473 23 C 0.094 3.906 24 C 0.034 3.966 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.169 0.831 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.286 0.714 32 H 0.128 0.872 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.185 -4.814 -1.655 10.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.159 5.159 3 C -0.100 4.100 4 C -0.067 4.067 5 C -0.101 4.101 6 C -0.148 4.148 7 C -0.165 4.165 8 C 0.061 3.939 9 C -0.467 4.467 10 H 0.103 0.897 11 C -0.147 4.147 12 N -0.404 5.404 13 Si 0.738 3.262 14 H -0.186 1.186 15 H -0.201 1.201 16 H -0.187 1.187 17 C -0.181 4.181 18 N -0.157 5.157 19 C -0.070 4.070 20 C -0.110 4.110 21 C -0.121 4.121 22 N -0.182 5.182 23 C -0.074 4.074 24 C -0.075 4.075 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.187 0.813 29 H 0.114 0.886 30 H 0.144 0.856 31 H 0.097 0.903 32 H 0.146 0.854 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.649 -6.381 -1.501 11.665 hybrid contribution 0.556 2.693 -0.028 2.750 sum -9.093 -3.687 -1.529 9.931 Atomic orbital electron populations 1.21899 0.77412 1.03959 1.02772 1.43301 1.05589 1.03963 1.63034 1.21762 0.89735 0.90692 1.07855 1.18766 0.91148 0.89801 1.06953 1.18039 0.88994 0.89001 1.14085 1.21171 0.98140 0.93423 1.02062 1.21278 0.91708 0.99668 1.03883 1.18581 0.93639 0.92789 0.88886 1.19572 0.96991 0.95870 1.34263 0.89658 1.26042 0.96821 0.99451 0.92384 1.69810 1.28796 1.20407 1.21432 0.86246 0.81004 0.78756 0.80169 1.18553 1.20130 1.18650 1.22436 0.95199 0.90312 1.10197 1.66957 0.98328 1.40885 1.09542 1.19260 0.91459 0.93647 1.02587 1.21492 1.00837 0.91970 0.96717 1.21998 0.92568 0.94622 1.02900 1.67433 1.00613 1.37551 1.12585 1.21536 0.98369 0.85406 1.02074 1.19390 0.91304 0.89681 1.07082 0.91475 0.89989 0.90292 0.81340 0.88582 0.85620 0.90291 0.85419 0.83797 0.83364 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 11.01 59.85 0.66 1.38 16 2 N -0.48 -6.85 3.15 -121.44 -0.38 -7.23 16 3 C 0.03 0.44 10.70 -16.40 -0.18 0.27 16 4 C -0.06 -1.21 6.25 -103.28 -0.65 -1.85 16 5 C 0.03 0.79 6.76 -82.79 -0.56 0.23 16 6 C -0.13 -2.89 9.53 -39.51 -0.38 -3.26 16 7 C -0.14 -3.46 8.74 -39.03 -0.34 -3.80 16 8 C 0.07 1.67 5.59 -106.63 -0.60 1.08 16 9 C -0.44 -10.81 9.05 -37.92 -0.34 -11.16 16 10 H 0.09 1.99 7.91 -52.49 -0.41 1.57 16 11 C 0.07 1.70 5.17 -17.34 -0.09 1.61 16 12 N -0.78 -18.77 10.92 55.55 0.61 -18.17 16 13 Si 0.91 17.28 29.59 -169.99 -5.03 12.25 16 14 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 15 H -0.28 -5.10 7.11 56.52 0.40 -4.69 16 16 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 17 C -0.02 -0.42 10.97 -16.78 -0.18 -0.60 16 18 N -0.45 -10.88 9.19 -9.15 -0.08 -10.96 16 19 C -0.06 -1.12 6.30 -104.96 -0.66 -1.78 16 20 C -0.09 -1.66 9.85 -39.63 -0.39 -2.05 16 21 C 0.03 0.47 11.12 -17.90 -0.20 0.27 16 22 N -0.47 -7.80 10.32 -13.37 -0.14 -7.94 16 23 C 0.09 1.43 11.17 -17.34 -0.19 1.24 16 24 C 0.03 0.57 6.82 -83.98 -0.57 0.00 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.58 8.13 -51.93 -0.42 0.16 16 27 H 0.08 0.58 8.12 -51.93 -0.42 0.15 16 28 H 0.17 2.29 7.20 -52.49 -0.38 1.92 16 29 H 0.10 1.86 6.96 -52.49 -0.37 1.49 16 30 H 0.13 3.13 6.19 -52.49 -0.32 2.81 16 31 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 32 H 0.13 2.87 8.06 -52.49 -0.42 2.45 16 33 H 0.14 2.71 7.36 -52.49 -0.39 2.33 16 34 H 0.15 1.99 8.06 -52.49 -0.42 1.56 16 35 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 305.98 15.07 4.61 4.61 Total: -1.00 -29.30 305.98 -8.62 -37.93 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -3.54 Total: 7.95 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -4.67 Total: -18.44 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.00 Total: -44.30 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.30 -8.62 -37.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245485853.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.589 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds