Wall clock time and date at job start Fri Apr 10 2020 17:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35863 * 124.83368 * 2 1 4 4 C 1.36473 * 109.74416 * 180.18608 * 3 2 1 5 5 C 1.47472 * 126.74481 * 179.83370 * 4 3 2 6 6 C 1.40171 * 119.47063 * 359.67932 * 5 4 3 7 7 C 1.36430 * 119.45859 * 179.72333 * 6 5 4 8 8 C 1.41403 * 118.43914 * 0.28327 * 7 6 5 9 9 C 1.40971 * 120.53028 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99792 * 203.76960 * 9 8 7 11 11 C 1.39908 * 120.00177 * 23.78215 * 9 8 7 12 12 N 1.30871 * 120.00233 * 17.68410 * 11 9 8 13 13 Si 1.86805 * 119.99828 * 197.68764 * 11 9 8 14 14 H 1.48501 * 109.47045 * 59.99664 * 13 11 9 15 15 H 1.48498 * 109.47027 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47036 * 299.99436 * 13 11 9 17 17 C 1.40955 * 118.93282 * 359.97438 * 8 7 6 18 18 N 1.31242 * 120.41650 * 0.02562 * 17 8 7 19 19 C 1.46863 * 106.51280 * 359.56751 * 4 3 2 20 20 C 1.39512 * 135.18716 * 180.28736 * 19 4 3 21 21 C 1.36798 * 118.72156 * 179.97438 * 20 19 4 22 22 N 1.32227 * 121.24499 * 359.97438 * 21 20 19 23 23 C 1.31756 * 122.53362 * 0.02562 * 22 21 20 24 24 C 1.37768 * 124.83211 * 179.69705 * 2 1 3 25 25 H 1.08999 * 109.46586 * 270.30330 * 1 2 3 26 26 H 1.09001 * 109.46856 * 30.30392 * 1 2 3 27 27 H 1.09001 * 109.47317 * 150.30527 * 1 2 3 28 28 H 1.08001 * 125.12962 * 0.03357 * 3 2 1 29 29 H 1.08000 * 120.27316 * 0.02562 * 6 5 4 30 30 H 1.07995 * 120.78224 * 180.29864 * 7 6 5 31 31 H 0.96992 * 119.99744 * 180.02562 * 12 11 9 32 32 H 1.07997 * 119.79403 * 179.97438 * 17 8 7 33 33 H 1.08002 * 120.63739 * 359.95189 * 20 19 4 34 34 H 1.08001 * 119.37911 * 180.02562 * 21 20 19 35 35 H 1.08006 * 119.84971 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2411 1.1152 0.0000 4 6 3.5588 0.7599 -0.0042 5 6 4.7182 1.6712 -0.0090 6 6 4.5063 3.0568 -0.0164 7 6 5.5791 3.8996 -0.0152 8 6 6.8768 3.3379 -0.0125 9 6 8.0163 4.1678 -0.0116 10 1 8.9573 3.7933 -0.3867 11 6 7.9284 5.4765 0.4754 12 7 6.9214 5.8258 1.2347 13 14 9.2483 6.7251 0.0416 14 1 9.3047 6.8939 -1.4327 15 1 8.9250 8.0280 0.6765 16 1 10.5643 6.2462 0.5358 17 6 7.0125 1.9349 -0.0106 18 7 5.9500 1.1646 -0.0120 19 6 3.5953 -0.7082 0.0036 20 6 4.6029 -1.6732 0.0091 21 6 4.2479 -2.9943 0.0166 22 7 2.9781 -3.3633 0.0190 23 6 1.9877 -2.4943 0.0141 24 6 2.2520 -1.1308 0.0060 25 1 -0.3632 0.0054 1.0277 26 1 -0.3633 0.8873 -0.5186 27 1 -0.3634 -0.8927 -0.5091 28 1 1.8711 2.1298 0.0005 29 1 3.5020 3.4540 -0.0182 30 1 5.4405 4.9707 -0.0159 31 1 6.8603 6.7332 1.5719 32 1 7.9971 1.4911 -0.0090 33 1 5.6431 -1.3828 0.0072 34 1 5.0192 -3.7502 0.0213 35 1 0.9658 -2.8440 0.0168 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245485853.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:44 Heat of formation + Delta-G solvation = 77.588889 kcal Electronic energy + Delta-G solvation = -20062.746576 eV Core-core repulsion = 17024.949839 eV Total energy + Delta-G solvation = -3037.796737 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.45989 -40.05789 -39.02067 -36.09427 -34.30283 -32.58509 -32.15760 -31.46088 -30.46549 -28.16450 -26.35311 -24.47031 -24.03692 -23.29866 -22.45164 -20.82890 -19.29625 -18.41020 -17.75857 -17.11737 -16.75941 -16.40020 -16.38094 -15.69843 -15.64463 -15.24797 -14.98441 -14.42335 -14.32673 -14.22786 -13.55434 -13.41717 -13.33346 -13.17759 -13.00434 -12.74663 -12.69856 -12.45899 -12.20598 -11.70858 -11.26121 -10.86624 -10.57259 -10.19823 -9.93591 -9.81679 -9.39285 -8.76432 -8.36799 -6.35006 -0.00661 0.49734 0.69897 1.10031 1.38836 1.44493 1.51691 1.86794 1.96412 2.17806 2.77949 3.06222 3.61352 3.75189 3.80153 3.81931 3.84546 4.08479 4.18078 4.45743 4.50645 4.53865 4.58916 4.69431 4.78075 4.80897 4.87949 5.01854 5.08517 5.18175 5.34168 5.42416 5.58395 5.67964 5.86514 5.94534 6.06064 6.14932 6.34957 6.49089 6.72770 6.79836 7.12226 7.76377 8.20295 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.003981 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.739449 B = 7031.497475 C = 7820.050242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.462 5.462 3 C 0.070 3.930 4 C -0.128 4.128 5 C 0.040 3.960 6 C -0.133 4.133 7 C -0.155 4.155 8 C 0.037 3.963 9 C -0.475 4.475 10 H 0.086 0.914 11 C 0.037 3.963 12 N -0.813 5.813 13 Si 0.988 3.012 14 H -0.259 1.259 15 H -0.265 1.265 16 H -0.258 1.258 17 C -0.040 4.040 18 N -0.466 5.466 19 C -0.087 4.087 20 C -0.122 4.122 21 C 0.037 3.963 22 N -0.487 5.487 23 C 0.112 3.888 24 C 0.023 3.977 25 H 0.085 0.915 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.202 0.798 29 H 0.131 0.869 30 H 0.119 0.881 31 H 0.294 0.706 32 H 0.132 0.868 33 H 0.124 0.876 34 H 0.171 0.829 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.223 -4.997 -1.832 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.144 5.144 3 C -0.061 4.061 4 C -0.135 4.135 5 C -0.097 4.097 6 C -0.153 4.153 7 C -0.180 4.180 8 C 0.032 3.968 9 C -0.503 4.503 10 H 0.104 0.896 11 C -0.180 4.180 12 N -0.437 5.437 13 Si 0.808 3.192 14 H -0.183 1.183 15 H -0.189 1.189 16 H -0.183 1.183 17 C -0.203 4.203 18 N -0.174 5.174 19 C -0.099 4.099 20 C -0.142 4.142 21 C -0.112 4.112 22 N -0.196 5.196 23 C -0.056 4.056 24 C -0.086 4.086 25 H 0.104 0.896 26 H 0.124 0.876 27 H 0.119 0.881 28 H 0.219 0.781 29 H 0.149 0.851 30 H 0.137 0.863 31 H 0.105 0.895 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.188 0.812 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -12.701 -6.604 -1.675 14.413 hybrid contribution 1.177 2.562 0.040 2.820 sum -11.524 -4.042 -1.635 12.322 Atomic orbital electron populations 1.22397 0.73485 1.06408 1.04762 1.43693 1.07701 1.02550 1.60458 1.22222 0.88686 0.92475 1.02722 1.18811 0.91856 0.90237 1.12633 1.18647 0.89600 0.90041 1.11424 1.21480 0.99266 0.93162 1.01398 1.21343 0.92252 0.99638 1.04801 1.18870 0.94582 0.93297 0.90016 1.19801 0.97021 0.97343 1.36164 0.89639 1.26855 0.99055 1.00587 0.91520 1.69842 1.30503 1.21269 1.22091 0.85153 0.77986 0.76288 0.79778 1.18345 1.18938 1.18260 1.22596 0.95819 0.90480 1.11380 1.67024 0.98932 1.41088 1.10372 1.19549 0.93375 0.93637 1.03299 1.21455 1.00079 0.93122 0.99536 1.22297 0.93439 0.94226 1.01228 1.67563 1.00692 1.37839 1.13539 1.22219 0.99882 0.84581 0.98937 1.19539 0.90463 0.90884 1.07720 0.89614 0.87559 0.88071 0.78125 0.85109 0.86299 0.89485 0.85009 0.85806 0.81161 0.79617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 11.01 127.77 1.41 2.24 16 2 N -0.46 -11.47 3.15 -538.13 -1.70 -13.17 16 3 C 0.07 2.08 10.70 83.66 0.89 2.97 16 4 C -0.13 -5.14 6.25 -19.00 -0.12 -5.26 16 5 C 0.04 1.87 6.76 41.84 0.28 2.16 16 6 C -0.13 -6.08 9.53 22.32 0.21 -5.87 16 7 C -0.15 -7.92 8.74 22.63 0.20 -7.73 16 8 C 0.04 1.98 5.59 -21.16 -0.12 1.86 16 9 C -0.47 -24.60 9.05 23.34 0.21 -24.39 16 10 H 0.09 4.22 7.91 -2.91 -0.02 4.20 16 11 C 0.04 1.76 5.17 85.24 0.44 2.20 16 12 N -0.81 -40.05 10.92 21.82 0.24 -39.81 16 13 Si 0.99 35.83 29.59 68.60 2.03 37.86 16 14 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 15 H -0.27 -9.03 7.11 99.48 0.71 -8.32 16 16 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 17 C -0.04 -2.11 10.97 85.45 0.94 -1.18 16 18 N -0.47 -23.80 9.19 -182.85 -1.68 -25.48 16 19 C -0.09 -3.38 6.30 -20.08 -0.13 -3.50 16 20 C -0.12 -4.61 9.85 22.24 0.22 -4.39 16 21 C 0.04 1.18 11.12 84.30 0.94 2.12 16 22 N -0.49 -15.00 10.32 -196.22 -2.02 -17.02 16 23 C 0.11 3.01 11.17 84.86 0.95 3.96 16 24 C 0.02 0.71 6.82 39.00 0.27 0.98 16 25 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.11 0.86 8.13 -2.39 -0.02 0.84 16 27 H 0.10 0.85 8.12 -2.39 -0.02 0.84 16 28 H 0.20 4.54 7.20 -2.91 -0.02 4.52 16 29 H 0.13 4.85 6.96 -2.91 -0.02 4.83 16 30 H 0.12 6.14 6.19 -2.91 -0.02 6.12 16 31 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 32 H 0.13 6.45 8.06 -2.91 -0.02 6.43 16 33 H 0.12 5.05 7.36 -2.91 -0.02 5.03 16 34 H 0.17 4.47 8.06 -2.91 -0.02 4.45 16 35 H 0.19 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -67.78 305.98 4.58 -63.20 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 1.12 Total: 28.24 kcal Atomic # 6 Polarization: -40.42 SS G_CDS: 6.59 Total: -33.83 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -5.16 Total: -95.48 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal Total: -67.78 4.58 -63.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245485853.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.791 kcal (2) G-P(sol) polarization free energy of solvation -67.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds