Wall clock time and date at job start Fri Apr 10 2020 17:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35858 * 124.82740 * 2 1 4 4 C 1.36626 * 109.71881 * 180.02562 * 3 2 1 5 5 C 1.47340 * 126.75704 * 179.97438 * 4 3 2 6 6 C 1.39966 * 120.67217 * 64.74052 * 5 4 3 7 7 C 1.38211 * 118.46266 * 179.80799 * 6 5 4 8 8 C 1.39136 * 119.77357 * 0.47308 * 7 6 5 9 9 N 1.31264 * 121.39378 * 359.76585 * 8 7 6 10 10 C 1.33756 * 121.64593 * 359.97438 * 9 8 7 11 11 C 1.40599 * 119.96509 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99910 * 180.02562 * 11 10 9 13 13 C 1.40048 * 120.00166 * 0.02562 * 11 10 9 14 14 N 1.30767 * 119.99803 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00229 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47131 * 60.00287 * 15 13 11 17 17 H 1.48496 * 109.47320 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46987 * 300.00233 * 15 13 11 19 19 C 1.46890 * 106.49518 * 359.97438 * 4 3 2 20 20 C 1.39501 * 135.17372 * 180.02562 * 19 4 3 21 21 C 1.36830 * 118.71608 * 180.02562 * 20 19 4 22 22 N 1.32214 * 121.23788 * 359.97438 * 21 20 19 23 23 C 1.31766 * 122.54021 * 0.02562 * 22 21 20 24 24 C 1.37791 * 124.82774 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47297 * 269.97887 * 1 2 3 26 26 H 1.09004 * 109.47256 * 29.97787 * 1 2 3 27 27 H 1.09001 * 109.47243 * 149.97543 * 1 2 3 28 28 H 1.08000 * 125.14442 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.77008 * 359.97438 * 6 5 4 30 30 H 1.08002 * 120.11347 * 180.22235 * 7 6 5 31 31 H 1.07997 * 119.30245 * 179.74988 * 8 7 6 32 32 H 0.97001 * 119.99991 * 180.02562 * 14 13 11 33 33 H 1.07993 * 120.64538 * 0.02562 * 20 19 4 34 34 H 1.07992 * 119.37654 * 180.25930 * 21 20 19 35 35 H 1.08001 * 119.84980 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2408 1.1152 0.0000 4 6 3.5599 0.7591 -0.0006 5 6 4.7188 1.6689 -0.0013 6 6 4.9637 2.5141 1.0872 7 6 6.0663 3.3461 1.0400 8 6 6.8939 3.3338 -0.0784 9 7 6.6546 2.5417 -1.0974 10 6 5.6068 1.7103 -1.1091 11 6 5.3836 0.8774 -2.2196 12 1 4.5376 0.2062 -2.2298 13 6 6.2584 0.9181 -3.3125 14 7 7.2830 1.7304 -3.2999 15 14 5.9614 -0.1880 -4.7882 16 1 4.6345 0.1207 -5.3792 17 1 7.0214 0.0441 -5.8020 18 1 5.9927 -1.6085 -4.3564 19 6 3.5954 -0.7094 -0.0003 20 6 4.6025 -1.6747 -0.0002 21 6 4.2467 -2.9959 -0.0005 22 7 2.9769 -3.3640 -0.0004 23 6 1.9869 -2.4945 -0.0005 24 6 2.2519 -1.1311 -0.0005 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.8710 2.1299 -0.0004 29 1 4.3079 2.5141 1.9452 30 1 6.2825 4.0065 1.8668 31 1 7.7511 3.9900 -0.1089 32 1 7.8887 1.7589 -4.0571 33 1 5.6428 -1.3849 0.0001 34 1 5.0177 -3.7521 0.0038 35 1 0.9648 -2.8436 -0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245491780.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:01 Heat of formation + Delta-G solvation = 106.913472 kcal Electronic energy + Delta-G solvation = -20897.295398 eV Core-core repulsion = 17860.770270 eV Total energy + Delta-G solvation = -3036.525128 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.07156 -38.07728 -37.61125 -33.67569 -33.25275 -30.76599 -30.20064 -30.06927 -28.90823 -26.21776 -25.29262 -23.00610 -22.21866 -21.59930 -20.99901 -19.08877 -17.46064 -16.85580 -16.35421 -15.63413 -15.23842 -15.11453 -14.45278 -14.22168 -14.05976 -13.77893 -13.48458 -13.19911 -12.64970 -12.50305 -12.30741 -11.82070 -11.63544 -11.57783 -11.28075 -11.17651 -11.07999 -10.85117 -10.43663 -10.02128 -9.41670 -9.28425 -9.15513 -8.24457 -8.09368 -7.73016 -7.57906 -6.94080 -6.42829 -4.52329 1.47331 1.95235 2.62485 2.90178 3.06135 3.09835 3.10224 3.22615 3.36883 3.92483 4.44232 4.72091 4.81290 4.93933 5.07146 5.21311 5.26606 5.35690 5.43624 5.76650 5.84660 5.95368 6.09220 6.11591 6.17992 6.37642 6.44680 6.58835 6.81117 6.86516 7.03207 7.11667 7.19303 7.36484 7.50491 7.55813 7.69104 7.77705 8.05111 8.25404 8.48512 8.62113 8.93701 10.07871 10.25914 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.007999 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.086246 B = 3499.493607 C = 4581.911132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.478 5.478 3 C 0.032 3.968 4 C -0.049 4.049 5 C -0.204 4.204 6 C -0.036 4.036 7 C -0.323 4.323 8 C 0.130 3.870 9 N -0.483 5.483 10 C 0.269 3.731 11 C -0.410 4.410 12 H 0.085 0.915 13 C 0.069 3.931 14 N -0.710 5.710 15 Si 0.900 3.100 16 H -0.265 1.265 17 H -0.276 1.276 18 H -0.262 1.262 19 C -0.057 4.057 20 C -0.092 4.092 21 C 0.033 3.967 22 N -0.475 5.475 23 C 0.095 3.905 24 C 0.034 3.966 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.166 0.834 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.274 0.726 33 H 0.134 0.866 34 H 0.148 0.852 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.298 -2.928 3.784 10.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.162 5.162 3 C -0.094 4.094 4 C -0.056 4.056 5 C -0.209 4.209 6 C -0.060 4.060 7 C -0.346 4.346 8 C -0.039 4.039 9 N -0.195 5.195 10 C 0.146 3.854 11 C -0.440 4.440 12 H 0.104 0.896 13 C -0.157 4.157 14 N -0.330 5.330 15 Si 0.724 3.276 16 H -0.190 1.190 17 H -0.201 1.201 18 H -0.186 1.186 19 C -0.069 4.069 20 C -0.112 4.112 21 C -0.117 4.117 22 N -0.184 5.184 23 C -0.073 4.073 24 C -0.074 4.074 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.183 0.817 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.134 0.866 32 H 0.085 0.915 33 H 0.152 0.848 34 H 0.165 0.835 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.021 -3.769 2.879 10.192 hybrid contribution -0.517 0.620 0.090 0.813 sum -9.538 -3.149 2.969 10.474 Atomic orbital electron populations 1.21870 0.77713 1.03917 1.02497 1.43317 1.05444 1.04077 1.63379 1.22060 0.90041 0.90471 1.06817 1.18764 0.91506 0.89612 1.05766 1.18665 0.99622 1.04148 0.98505 1.20881 0.95551 0.94083 0.95533 1.21161 1.02407 1.09119 1.01951 1.22588 0.96300 0.95241 0.89733 1.68789 1.19170 1.06987 1.24519 1.18537 0.86513 0.89831 0.90503 1.19501 1.08814 1.17277 0.98381 0.89646 1.26110 0.94430 0.95347 0.99794 1.70141 1.08211 1.26463 1.28228 0.86486 0.79148 0.81392 0.80584 1.18954 1.20084 1.18621 1.19436 0.91389 0.94115 1.01960 1.21317 1.00206 0.92295 0.97382 1.21942 0.92572 0.94534 1.02634 1.67428 1.00562 1.37519 1.12867 1.21527 0.98296 0.85506 1.01974 1.19340 0.91323 0.89577 1.07172 0.91684 0.90103 0.90398 0.81661 0.88860 0.88908 0.86559 0.91478 0.84805 0.83458 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 11.01 59.84 0.66 1.47 16 2 N -0.48 -7.38 3.15 -121.40 -0.38 -7.76 16 3 C 0.03 0.56 11.26 -16.35 -0.18 0.37 16 4 C -0.05 -1.04 4.65 -103.28 -0.48 -1.52 16 5 C -0.20 -4.81 5.85 -104.09 -0.61 -5.42 16 6 C -0.04 -0.79 9.92 -38.94 -0.39 -1.18 16 7 C -0.32 -7.09 10.10 -39.26 -0.40 -7.48 16 8 C 0.13 3.09 11.17 -17.46 -0.20 2.89 16 9 N -0.48 -13.03 7.85 -10.88 -0.09 -13.12 16 10 C 0.27 7.14 6.57 -84.68 -0.56 6.58 16 11 C -0.41 -10.74 8.70 -38.01 -0.33 -11.07 16 12 H 0.09 2.22 6.16 -52.49 -0.32 1.89 16 13 C 0.07 1.75 5.50 -17.33 -0.10 1.66 16 14 N -0.71 -18.60 11.45 55.55 0.64 -17.96 16 15 Si 0.90 18.94 29.56 -169.99 -5.02 13.91 16 16 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 17 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 18 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 19 C -0.06 -1.17 5.45 -104.95 -0.57 -1.74 16 20 C -0.09 -1.81 10.12 -39.62 -0.40 -2.21 16 21 C 0.03 0.58 11.12 -17.90 -0.20 0.38 16 22 N -0.47 -8.40 10.32 -13.37 -0.14 -8.53 16 23 C 0.09 1.54 11.17 -17.34 -0.19 1.35 16 24 C 0.03 0.61 6.82 -83.97 -0.57 0.04 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.67 8.13 -51.93 -0.42 0.24 16 27 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 28 H 0.17 2.46 8.06 -52.49 -0.42 2.04 16 29 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 32 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 33 H 0.13 2.71 8.06 -52.49 -0.42 2.28 16 34 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 308.30 15.07 4.65 4.65 Total: -1.00 -30.67 308.30 -8.55 -39.21 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.68 Total: 5.50 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -4.51 Total: -15.89 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.03 Total: -47.38 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.91 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.67 -8.55 -39.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245491780.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.125 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds