Wall clock time and date at job start Fri Apr 10 2020 17:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35858 * 124.82740 * 2 1 4 4 C 1.36626 * 109.71881 * 180.02562 * 3 2 1 5 5 C 1.47340 * 126.75704 * 179.97438 * 4 3 2 6 6 C 1.39966 * 120.67217 * 64.74052 * 5 4 3 7 7 C 1.38211 * 118.46266 * 179.80799 * 6 5 4 8 8 C 1.39136 * 119.77357 * 0.47308 * 7 6 5 9 9 N 1.31264 * 121.39378 * 359.76585 * 8 7 6 10 10 C 1.33756 * 121.64593 * 359.97438 * 9 8 7 11 11 C 1.40599 * 119.96509 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99910 * 180.02562 * 11 10 9 13 13 C 1.40048 * 120.00166 * 0.02562 * 11 10 9 14 14 N 1.30767 * 119.99803 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00229 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47131 * 60.00287 * 15 13 11 17 17 H 1.48496 * 109.47320 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46987 * 300.00233 * 15 13 11 19 19 C 1.46890 * 106.49518 * 359.97438 * 4 3 2 20 20 C 1.39501 * 135.17372 * 180.02562 * 19 4 3 21 21 C 1.36830 * 118.71608 * 180.02562 * 20 19 4 22 22 N 1.32214 * 121.23788 * 359.97438 * 21 20 19 23 23 C 1.31766 * 122.54021 * 0.02562 * 22 21 20 24 24 C 1.37791 * 124.82774 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47297 * 269.97887 * 1 2 3 26 26 H 1.09004 * 109.47256 * 29.97787 * 1 2 3 27 27 H 1.09001 * 109.47243 * 149.97543 * 1 2 3 28 28 H 1.08000 * 125.14442 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.77008 * 359.97438 * 6 5 4 30 30 H 1.08002 * 120.11347 * 180.22235 * 7 6 5 31 31 H 1.07997 * 119.30245 * 179.74988 * 8 7 6 32 32 H 0.97001 * 119.99991 * 180.02562 * 14 13 11 33 33 H 1.07993 * 120.64538 * 0.02562 * 20 19 4 34 34 H 1.07992 * 119.37654 * 180.25930 * 21 20 19 35 35 H 1.08001 * 119.84980 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2408 1.1152 0.0000 4 6 3.5599 0.7591 -0.0006 5 6 4.7188 1.6689 -0.0013 6 6 4.9637 2.5141 1.0872 7 6 6.0663 3.3461 1.0400 8 6 6.8939 3.3338 -0.0784 9 7 6.6546 2.5417 -1.0974 10 6 5.6068 1.7103 -1.1091 11 6 5.3836 0.8774 -2.2196 12 1 4.5376 0.2062 -2.2298 13 6 6.2584 0.9181 -3.3125 14 7 7.2830 1.7304 -3.2999 15 14 5.9614 -0.1880 -4.7882 16 1 4.6345 0.1207 -5.3792 17 1 7.0214 0.0441 -5.8020 18 1 5.9927 -1.6085 -4.3564 19 6 3.5954 -0.7094 -0.0003 20 6 4.6025 -1.6747 -0.0002 21 6 4.2467 -2.9959 -0.0005 22 7 2.9769 -3.3640 -0.0004 23 6 1.9869 -2.4945 -0.0005 24 6 2.2519 -1.1311 -0.0005 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.8710 2.1299 -0.0004 29 1 4.3079 2.5141 1.9452 30 1 6.2825 4.0065 1.8668 31 1 7.7511 3.9900 -0.1089 32 1 7.8887 1.7589 -4.0571 33 1 5.6428 -1.3849 0.0001 34 1 5.0177 -3.7521 0.0038 35 1 0.9648 -2.8436 -0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245491780.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:00 Heat of formation + Delta-G solvation = 89.895962 kcal Electronic energy + Delta-G solvation = -20898.033333 eV Core-core repulsion = 17860.770270 eV Total energy + Delta-G solvation = -3037.263062 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.40566 -39.84952 -38.96775 -35.52252 -34.64063 -32.42602 -31.86282 -31.42735 -30.32826 -27.78594 -26.76700 -24.37882 -23.79520 -23.28906 -22.51645 -20.55326 -19.32449 -18.18708 -17.68521 -17.36230 -16.61864 -16.35119 -16.13446 -15.90290 -15.43557 -15.19209 -14.98243 -14.36558 -14.32656 -14.10694 -13.56700 -13.26915 -13.17576 -12.90479 -12.87134 -12.75504 -12.68066 -12.49205 -12.12161 -11.73176 -11.24426 -10.73561 -10.54948 -10.02104 -9.61730 -9.43959 -9.34531 -8.44874 -8.21406 -6.42376 0.08990 0.58136 0.85928 1.15339 1.33860 1.44200 1.50865 1.85585 1.95347 2.18270 2.85629 3.05968 3.64123 3.80620 3.87031 3.95104 4.03717 4.17707 4.31950 4.42849 4.50505 4.54469 4.61729 4.75774 4.79092 4.79635 4.92598 4.99668 5.09601 5.24816 5.41164 5.51422 5.67948 5.71985 5.88945 5.95710 6.17527 6.24859 6.35196 6.43167 6.75994 7.06107 7.13459 8.23141 8.43641 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.007999 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.086246 B = 3499.493607 C = 4581.911132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.466 5.466 3 C 0.060 3.940 4 C -0.107 4.107 5 C -0.198 4.198 6 C -0.048 4.048 7 C -0.311 4.311 8 C 0.103 3.897 9 N -0.521 5.521 10 C 0.239 3.761 11 C -0.436 4.436 12 H 0.078 0.922 13 C 0.029 3.971 14 N -0.750 5.750 15 Si 0.966 3.034 16 H -0.262 1.262 17 H -0.263 1.263 18 H -0.264 1.264 19 C -0.084 4.084 20 C -0.122 4.122 21 C 0.037 3.963 22 N -0.488 5.488 23 C 0.111 3.889 24 C 0.024 3.976 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.193 0.807 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.135 0.865 32 H 0.278 0.722 33 H 0.109 0.891 34 H 0.168 0.832 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.392 -3.516 4.354 13.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.148 5.148 3 C -0.069 4.069 4 C -0.115 4.115 5 C -0.203 4.203 6 C -0.072 4.072 7 C -0.334 4.334 8 C -0.063 4.063 9 N -0.234 5.234 10 C 0.115 3.885 11 C -0.466 4.466 12 H 0.096 0.904 13 C -0.193 4.193 14 N -0.372 5.372 15 Si 0.787 3.213 16 H -0.186 1.186 17 H -0.187 1.187 18 H -0.188 1.188 19 C -0.096 4.096 20 C -0.143 4.143 21 C -0.111 4.111 22 N -0.197 5.197 23 C -0.057 4.057 24 C -0.085 4.085 25 H 0.106 0.894 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.210 0.790 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.089 0.911 33 H 0.127 0.873 34 H 0.185 0.815 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -12.132 -4.352 3.476 13.350 hybrid contribution 0.286 0.858 0.097 0.910 sum -11.846 -3.494 3.573 12.857 Atomic orbital electron populations 1.22341 0.73867 1.06037 1.04664 1.43646 1.07502 1.02607 1.61034 1.22360 0.89166 0.92060 1.03284 1.18782 0.92294 0.89894 1.10489 1.18954 0.99752 1.03929 0.97656 1.21259 0.96096 0.93830 0.96024 1.21515 1.01384 1.08600 1.01877 1.22997 0.97581 0.95569 0.90119 1.68696 1.20201 1.08182 1.26320 1.18946 0.87389 0.90321 0.91852 1.19562 1.09439 1.18162 0.99485 0.90389 1.26859 0.93938 0.96436 1.02111 1.70227 1.09321 1.28334 1.29328 0.85500 0.79296 0.79116 0.77379 1.18605 1.18712 1.18837 1.19645 0.93118 0.94072 1.02753 1.21242 0.99223 0.93524 1.00293 1.22205 0.93479 0.94097 1.01357 1.67549 1.00558 1.37794 1.13800 1.22202 0.99785 0.84717 0.98976 1.19490 0.90554 0.90755 1.07715 0.89394 0.88060 0.88407 0.79001 0.86010 0.85708 0.84808 0.91101 0.87300 0.81468 0.79727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 11.01 127.77 1.41 2.45 16 2 N -0.47 -12.82 3.15 -538.00 -1.69 -14.52 16 3 C 0.06 1.96 11.26 83.69 0.94 2.91 16 4 C -0.11 -4.51 4.65 -18.99 -0.09 -4.60 16 5 C -0.20 -9.52 5.85 -19.52 -0.11 -9.64 16 6 C -0.05 -2.08 9.92 22.68 0.23 -1.85 16 7 C -0.31 -13.43 10.10 22.48 0.23 -13.21 16 8 C 0.10 5.01 11.17 84.99 0.95 5.96 16 9 N -0.52 -29.34 7.85 -188.33 -1.48 -30.81 16 10 C 0.24 13.22 6.57 40.37 0.27 13.48 16 11 C -0.44 -23.94 8.70 23.29 0.20 -23.74 16 12 H 0.08 4.26 6.16 -2.91 -0.02 4.24 16 13 C 0.03 1.51 5.50 85.29 0.47 1.98 16 14 N -0.75 -41.11 11.45 21.84 0.25 -40.86 16 15 Si 0.97 40.08 29.56 68.60 2.03 42.11 16 16 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 17 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 18 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 19 C -0.08 -3.47 5.45 -20.08 -0.11 -3.58 16 20 C -0.12 -5.01 10.12 22.24 0.23 -4.79 16 21 C 0.04 1.31 11.12 84.30 0.94 2.25 16 22 N -0.49 -16.35 10.32 -196.21 -2.02 -18.38 16 23 C 0.11 3.28 11.17 84.86 0.95 4.23 16 24 C 0.02 0.81 6.82 38.99 0.27 1.07 16 25 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 1.15 8.13 -2.38 -0.02 1.13 16 27 H 0.10 1.11 8.12 -2.39 -0.02 1.10 16 28 H 0.19 5.10 8.06 -2.91 -0.02 5.08 16 29 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 30 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 31 H 0.13 5.76 8.06 -2.91 -0.02 5.74 16 32 H 0.28 13.86 8.29 -92.71 -0.77 13.09 16 33 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 34 H 0.17 4.97 8.06 -2.91 -0.02 4.94 16 35 H 0.19 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -70.26 308.30 4.94 -65.32 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 1.11 Total: 24.22 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 6.75 Total: -27.09 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -4.95 Total: -104.57 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -70.26 4.94 -65.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245491780.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.217 kcal (2) G-P(sol) polarization free energy of solvation -70.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds