Wall clock time and date at job start Fri Apr 10 2020 17:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37959 * 120.37126 * 2 1 4 4 C 1.40225 * 118.38065 * 180.24065 * 3 2 1 5 5 C 1.47911 * 120.47833 * 179.73062 * 4 3 2 6 6 C 1.40045 * 119.50032 * 359.72302 * 5 4 3 7 7 C 1.35966 * 121.18248 * 180.02562 * 6 5 4 8 8 C 1.41067 * 120.11518 * 0.02562 * 7 6 5 9 9 C 1.40399 * 120.48250 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00369 * 154.62613 * 9 8 7 11 11 C 1.40270 * 119.99926 * 334.62990 * 9 8 7 12 12 N 1.30655 * 120.00185 * 334.60510 * 11 9 8 13 13 Si 1.86802 * 120.00225 * 154.60897 * 11 9 8 14 14 H 1.48498 * 109.47374 * 179.97438 * 13 11 9 15 15 H 1.48503 * 109.47043 * 300.00243 * 13 11 9 16 16 H 1.48509 * 109.47080 * 59.99617 * 13 11 9 17 17 C 1.46656 * 119.03371 * 0.22412 * 8 7 6 18 18 C 1.43201 * 120.56410 * 179.75013 * 17 8 7 19 19 N 8.32469 * 155.98382 * 359.42694 * 2 1 3 20 20 C 1.39058 * 118.87055 * 359.50068 * 17 8 7 21 21 C 1.39547 * 119.04506 * 359.45561 * 4 3 2 22 22 N 1.31685 * 120.64751 * 0.29901 * 21 4 3 23 23 C 1.32559 * 121.76872 * 359.97438 * 22 21 4 24 24 N 1.38723 * 119.55122 * 180.02562 * 23 22 21 25 25 H 1.08999 * 109.47669 * 270.28472 * 1 2 3 26 26 H 1.09006 * 109.47236 * 30.28944 * 1 2 3 27 27 H 1.09003 * 109.46930 * 150.27911 * 1 2 3 28 28 H 1.07996 * 120.81121 * 359.96727 * 3 2 1 29 29 H 1.07992 * 119.40716 * 0.04019 * 6 5 4 30 30 H 1.08000 * 119.93641 * 179.97438 * 7 6 5 31 31 H 0.96995 * 119.99403 * 354.18466 * 12 11 9 32 32 H 1.08005 * 120.09743 * 180.24510 * 20 17 8 33 33 H 1.07999 * 119.68098 * 180.27260 * 21 4 3 34 34 H 0.97003 * 119.99387 * 359.97438 * 24 23 22 35 35 H 0.96992 * 120.00735 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2045 1.1903 0.0000 4 6 3.6059 1.1416 -0.0052 5 6 4.3999 2.3895 -0.0114 6 6 3.7417 3.6256 -0.0180 7 6 4.4376 4.7937 -0.0243 8 6 5.8482 4.7771 -0.0249 9 6 6.5745 5.9786 -0.0320 10 1 7.5773 6.0059 0.3681 11 6 5.9978 7.1437 -0.5588 12 7 5.0536 7.0565 -1.4577 13 14 6.5796 8.8202 0.0248 14 1 5.8177 9.8818 -0.6806 15 1 6.3569 8.9396 1.4882 16 1 8.0273 8.9718 -0.2695 17 6 6.5449 3.4866 -0.0237 18 6 7.9759 3.4316 -0.0296 19 7 9.1110 3.3879 -0.0339 20 6 5.7924 2.3174 -0.0113 21 6 4.2406 -0.1012 0.0015 22 7 3.5370 -1.2143 0.0065 23 6 2.2115 -1.2021 0.0061 24 7 1.5162 -2.4025 0.0121 25 1 -0.3634 0.0051 1.0276 26 1 -0.3634 0.8874 -0.5183 27 1 -0.3633 -0.8925 -0.5095 28 1 1.6839 2.1365 -0.0005 29 1 2.6621 3.6515 -0.0178 30 1 3.9095 5.7357 -0.0298 31 1 4.8099 6.1914 -1.8226 32 1 6.2850 1.3562 -0.0061 33 1 5.3195 -0.1506 0.0020 34 1 2.0002 -3.2432 0.0163 35 1 0.5463 -2.4013 0.0114 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245536979.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:06 Heat of formation + Delta-G solvation = 62.169769 kcal Electronic energy + Delta-G solvation = -19787.504824 eV Core-core repulsion = 16749.039464 eV Total energy + Delta-G solvation = -3038.465360 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.00421 -38.02967 -35.41998 -35.11123 -34.04052 -33.19313 -30.98688 -30.18850 -28.50558 -26.93370 -25.33413 -23.30854 -22.23099 -21.78185 -20.28969 -18.56568 -17.40235 -17.19322 -16.95382 -15.28759 -14.92848 -14.46616 -14.35693 -14.25583 -14.01223 -13.55480 -13.05751 -12.96480 -12.80526 -12.71117 -12.45273 -12.33258 -11.92330 -11.75149 -11.61511 -11.45208 -11.34991 -10.82672 -10.62149 -10.40167 -10.11045 -9.95611 -9.45797 -9.22201 -9.04877 -8.26173 -8.03931 -7.68059 -7.04536 -4.84907 1.46484 1.66047 2.06816 2.65273 2.97129 3.09360 3.17620 3.70232 3.73051 3.78785 3.92609 4.29302 4.43220 4.85499 5.04459 5.19303 5.23343 5.28842 5.34655 5.54982 5.59482 5.68394 5.76120 5.88461 6.09938 6.17033 6.34194 6.55006 6.57646 6.71905 6.90939 6.93757 7.21161 7.31672 7.38587 7.44576 7.55008 7.64976 7.67940 7.80038 8.21065 8.32085 8.54829 8.69138 9.52259 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024722 B = 0.004194 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.339920 B = 6673.900673 C = 7696.491707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.195 4.195 3 C -0.059 4.059 4 C -0.081 4.081 5 C -0.198 4.198 6 C -0.040 4.040 7 C -0.215 4.215 8 C 0.128 3.872 9 C -0.463 4.463 10 H 0.087 0.913 11 C 0.036 3.964 12 N -0.755 5.755 13 Si 1.066 2.934 14 H -0.268 1.268 15 H -0.268 1.268 16 H -0.270 1.270 17 C -0.186 4.186 18 C 0.298 3.702 19 N -0.503 5.503 20 C 0.004 3.996 21 C 0.115 3.885 22 N -0.534 5.534 23 C 0.368 3.632 24 N -0.861 5.861 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.130 0.870 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.308 0.692 32 H 0.105 0.895 33 H 0.152 0.848 34 H 0.398 0.602 35 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.580 -7.133 1.713 12.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.202 4.202 3 C -0.085 4.085 4 C -0.085 4.085 5 C -0.200 4.200 6 C -0.059 4.059 7 C -0.234 4.234 8 C 0.122 3.878 9 C -0.488 4.488 10 H 0.105 0.895 11 C -0.191 4.191 12 N -0.375 5.375 13 Si 0.888 3.112 14 H -0.192 1.192 15 H -0.193 1.193 16 H -0.195 1.195 17 C -0.192 4.192 18 C -0.012 4.012 19 N -0.182 5.182 20 C -0.017 4.017 21 C -0.042 4.042 22 N -0.251 5.251 23 C 0.132 3.868 24 N -0.407 5.407 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.148 0.852 29 H 0.117 0.883 30 H 0.132 0.868 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.169 0.831 34 H 0.226 0.774 35 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.700 -6.339 1.491 10.867 hybrid contribution -0.803 -1.231 0.114 1.475 sum -9.503 -7.570 1.604 12.255 Atomic orbital electron populations 1.20534 0.91195 1.02170 1.01708 1.19981 0.96384 0.92543 1.11290 1.21258 0.93292 0.97089 0.96813 1.19570 0.92940 0.94048 1.01933 1.17538 0.91468 0.90716 1.20308 1.20419 0.97865 0.91921 0.95713 1.20763 0.93353 0.97291 1.11994 1.18487 0.91583 0.90307 0.87406 1.20911 1.02956 0.93949 1.30997 0.89484 1.27410 0.92647 1.05960 0.93079 1.70411 1.19202 1.32993 1.14860 0.83597 0.77370 0.72615 0.77666 1.19203 1.19274 1.19536 1.16671 0.83301 0.93939 1.25300 1.25712 0.92664 0.91530 0.91323 1.81037 1.12562 1.09728 1.14879 1.20626 0.92575 0.95343 0.93186 1.22465 0.99231 0.86273 0.96280 1.67007 1.05741 1.32373 1.19936 1.18051 0.88331 0.86015 0.94427 1.42049 1.08392 1.05030 1.85237 0.91761 0.91471 0.92434 0.85194 0.88339 0.86757 0.87778 0.87756 0.83093 0.77395 0.76806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 9.58 36.00 0.34 -0.63 16 2 C -0.20 -2.70 5.91 -104.32 -0.62 -3.32 16 3 C -0.06 -0.91 9.18 -38.94 -0.36 -1.27 16 4 C -0.08 -1.40 5.90 -104.70 -0.62 -2.02 16 5 C -0.20 -3.80 5.88 -104.81 -0.62 -4.41 16 6 C -0.04 -0.77 9.31 -39.72 -0.37 -1.14 16 7 C -0.21 -4.60 7.88 -39.33 -0.31 -4.91 16 8 C 0.13 2.96 5.46 -104.61 -0.57 2.39 16 9 C -0.46 -10.90 8.48 -38.01 -0.32 -11.22 16 10 H 0.09 2.10 7.45 -52.48 -0.39 1.71 16 11 C 0.04 0.80 4.94 -17.29 -0.09 0.71 16 12 N -0.75 -17.23 12.30 55.56 0.68 -16.54 16 13 Si 1.07 19.02 30.01 -169.99 -5.10 13.92 16 14 H -0.27 -4.71 7.11 56.52 0.40 -4.30 16 15 H -0.27 -4.60 7.11 56.52 0.40 -4.20 16 16 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 17 C -0.19 -4.15 5.93 -104.27 -0.62 -4.77 16 18 C 0.30 6.86 14.30 -22.47 -0.32 6.54 16 19 N -0.50 -11.97 18.54 41.84 0.78 -11.20 16 20 C 0.00 0.07 9.13 -38.83 -0.35 -0.28 16 21 C 0.11 1.94 10.58 -17.13 -0.18 1.76 16 22 N -0.53 -8.86 10.38 -12.10 -0.13 -8.99 16 23 C 0.37 5.34 7.73 -155.08 -1.20 4.14 16 24 N -0.86 -9.02 8.97 31.14 0.28 -8.74 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 27 H 0.06 0.46 6.55 -51.93 -0.34 0.12 16 28 H 0.13 1.81 6.24 -52.49 -0.33 1.48 16 29 H 0.10 1.65 6.15 -52.49 -0.32 1.33 16 30 H 0.11 2.47 6.48 -52.49 -0.34 2.13 16 31 H 0.31 7.14 6.68 -40.82 -0.27 6.87 16 32 H 0.10 1.85 6.15 -52.48 -0.32 1.52 16 33 H 0.15 2.37 6.16 -52.49 -0.32 2.05 16 34 H 0.40 3.75 8.95 -40.82 -0.37 3.39 16 35 H 0.40 3.13 6.78 -40.82 -0.28 2.85 16 LS Contribution 305.53 15.07 4.60 4.60 Total: -1.00 -26.40 305.53 -8.00 -34.40 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -2.92 Total: 10.97 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -6.20 Total: -18.42 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 1.61 Total: -45.47 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.10 Total: 13.92 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.40 -8.00 -34.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245536979.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.568 kcal (2) G-P(sol) polarization free energy of solvation -26.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds