Wall clock time and date at job start Fri Apr 10 2020 17:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37959 * 120.37126 * 2 1 4 4 C 1.40225 * 118.38065 * 180.24065 * 3 2 1 5 5 C 1.47911 * 120.47833 * 179.73062 * 4 3 2 6 6 C 1.40045 * 119.50032 * 359.72302 * 5 4 3 7 7 C 1.35966 * 121.18248 * 180.02562 * 6 5 4 8 8 C 1.41067 * 120.11518 * 0.02562 * 7 6 5 9 9 C 1.40399 * 120.48250 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00369 * 154.62613 * 9 8 7 11 11 C 1.40270 * 119.99926 * 334.62990 * 9 8 7 12 12 N 1.30655 * 120.00185 * 334.60510 * 11 9 8 13 13 Si 1.86802 * 120.00225 * 154.60897 * 11 9 8 14 14 H 1.48498 * 109.47374 * 179.97438 * 13 11 9 15 15 H 1.48503 * 109.47043 * 300.00243 * 13 11 9 16 16 H 1.48509 * 109.47080 * 59.99617 * 13 11 9 17 17 C 1.46656 * 119.03371 * 0.22412 * 8 7 6 18 18 C 1.43201 * 120.56410 * 179.75013 * 17 8 7 19 19 N 8.32469 * 155.98382 * 359.42694 * 2 1 3 20 20 C 1.39058 * 118.87055 * 359.50068 * 17 8 7 21 21 C 1.39547 * 119.04506 * 359.45561 * 4 3 2 22 22 N 1.31685 * 120.64751 * 0.29901 * 21 4 3 23 23 C 1.32559 * 121.76872 * 359.97438 * 22 21 4 24 24 N 1.38723 * 119.55122 * 180.02562 * 23 22 21 25 25 H 1.08999 * 109.47669 * 270.28472 * 1 2 3 26 26 H 1.09006 * 109.47236 * 30.28944 * 1 2 3 27 27 H 1.09003 * 109.46930 * 150.27911 * 1 2 3 28 28 H 1.07996 * 120.81121 * 359.96727 * 3 2 1 29 29 H 1.07992 * 119.40716 * 0.04019 * 6 5 4 30 30 H 1.08000 * 119.93641 * 179.97438 * 7 6 5 31 31 H 0.96995 * 119.99403 * 354.18466 * 12 11 9 32 32 H 1.08005 * 120.09743 * 180.24510 * 20 17 8 33 33 H 1.07999 * 119.68098 * 180.27260 * 21 4 3 34 34 H 0.97003 * 119.99387 * 359.97438 * 24 23 22 35 35 H 0.96992 * 120.00735 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2045 1.1903 0.0000 4 6 3.6059 1.1416 -0.0052 5 6 4.3999 2.3895 -0.0114 6 6 3.7417 3.6256 -0.0180 7 6 4.4376 4.7937 -0.0243 8 6 5.8482 4.7771 -0.0249 9 6 6.5745 5.9786 -0.0320 10 1 7.5773 6.0059 0.3681 11 6 5.9978 7.1437 -0.5588 12 7 5.0536 7.0565 -1.4577 13 14 6.5796 8.8202 0.0248 14 1 5.8177 9.8818 -0.6806 15 1 6.3569 8.9396 1.4882 16 1 8.0273 8.9718 -0.2695 17 6 6.5449 3.4866 -0.0237 18 6 7.9759 3.4316 -0.0296 19 7 9.1110 3.3879 -0.0339 20 6 5.7924 2.3174 -0.0113 21 6 4.2406 -0.1012 0.0015 22 7 3.5370 -1.2143 0.0065 23 6 2.2115 -1.2021 0.0061 24 7 1.5162 -2.4025 0.0121 25 1 -0.3634 0.0051 1.0276 26 1 -0.3634 0.8874 -0.5183 27 1 -0.3633 -0.8925 -0.5095 28 1 1.6839 2.1365 -0.0005 29 1 2.6621 3.6515 -0.0178 30 1 3.9095 5.7357 -0.0298 31 1 4.8099 6.1914 -1.8226 32 1 6.2850 1.3562 -0.0061 33 1 5.3195 -0.1506 0.0020 34 1 2.0002 -3.2432 0.0163 35 1 0.5463 -2.4013 0.0114 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245536979.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:05 Heat of formation + Delta-G solvation = 49.096084 kcal Electronic energy + Delta-G solvation = -19788.071742 eV Core-core repulsion = 16749.039464 eV Total energy + Delta-G solvation = -3039.032278 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.21867 -39.62537 -37.15025 -36.60318 -35.35323 -34.33640 -32.38982 -31.81033 -29.88949 -28.03877 -26.86236 -24.70648 -23.65598 -23.20919 -21.69143 -20.22091 -18.62207 -18.51445 -18.21651 -16.78589 -16.36132 -15.90000 -15.63757 -15.46175 -15.42116 -14.79529 -14.70762 -14.45404 -14.24406 -14.01158 -13.61716 -13.55029 -13.51063 -13.36290 -13.10782 -12.86929 -12.75616 -12.20483 -11.98916 -11.79851 -11.61036 -11.52043 -11.02074 -10.45505 -10.28349 -9.74913 -9.66845 -9.34599 -8.35033 -6.56324 0.12526 0.36871 0.47192 1.14300 1.51072 1.66176 1.80182 1.95307 2.23713 2.29703 2.59125 2.75310 3.09170 3.47118 3.57101 3.77232 4.00563 4.10586 4.17613 4.22233 4.38771 4.57921 4.64840 4.83759 4.87155 4.91480 4.93555 5.20945 5.24070 5.28721 5.40912 5.52464 5.59586 5.68451 5.87981 5.91649 6.06093 6.15394 6.49898 6.50983 6.61970 6.68332 6.87697 7.45378 7.80446 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024722 B = 0.004194 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.339920 B = 6673.900673 C = 7696.491707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.196 4.196 3 C -0.058 4.058 4 C -0.111 4.111 5 C -0.178 4.178 6 C -0.036 4.036 7 C -0.224 4.224 8 C 0.112 3.888 9 C -0.502 4.502 10 H 0.069 0.931 11 C 0.012 3.988 12 N -0.772 5.772 13 Si 1.110 2.890 14 H -0.261 1.261 15 H -0.257 1.257 16 H -0.268 1.268 17 C -0.207 4.207 18 C 0.302 3.698 19 N -0.525 5.525 20 C -0.003 4.003 21 C 0.110 3.890 22 N -0.557 5.557 23 C 0.368 3.632 24 N -0.842 5.842 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.145 0.855 29 H 0.129 0.871 30 H 0.109 0.891 31 H 0.297 0.703 32 H 0.123 0.877 33 H 0.154 0.846 34 H 0.405 0.595 35 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.398 -8.664 2.029 16.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.203 4.203 3 C -0.083 4.083 4 C -0.116 4.116 5 C -0.180 4.180 6 C -0.055 4.055 7 C -0.243 4.243 8 C 0.106 3.894 9 C -0.528 4.528 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.392 5.392 13 Si 0.926 3.074 14 H -0.185 1.185 15 H -0.181 1.181 16 H -0.193 1.193 17 C -0.213 4.213 18 C -0.006 4.006 19 N -0.205 5.205 20 C -0.024 4.024 21 C -0.047 4.047 22 N -0.275 5.275 23 C 0.130 3.870 24 N -0.389 5.389 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.163 0.837 29 H 0.147 0.853 30 H 0.127 0.873 31 H 0.110 0.890 32 H 0.141 0.859 33 H 0.171 0.829 34 H 0.235 0.765 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -11.551 -7.923 1.807 14.123 hybrid contribution -0.171 -1.166 0.028 1.179 sum -11.722 -9.089 1.835 14.946 Atomic orbital electron populations 1.20637 0.88049 1.03769 1.03090 1.20390 0.98606 0.91567 1.09701 1.21513 0.92563 0.98546 0.95695 1.19488 0.93865 0.93122 1.05113 1.17826 0.91362 0.91715 1.17123 1.20725 0.99424 0.91160 0.94177 1.20758 0.92742 0.97950 1.12818 1.18760 0.92578 0.90542 0.87472 1.20923 1.02762 0.95356 1.33737 0.91275 1.28479 0.92027 1.08292 0.92196 1.70499 1.20653 1.32129 1.15915 0.83073 0.77062 0.69374 0.77881 1.18456 1.18138 1.19263 1.16882 0.83025 0.94678 1.26700 1.25953 0.92937 0.90933 0.90819 1.81005 1.13029 1.10438 1.16010 1.20847 0.93101 0.95386 0.93063 1.22536 0.99642 0.86446 0.96033 1.67046 1.06917 1.32154 1.21368 1.18462 0.88079 0.87638 0.92805 1.42063 1.09266 1.04159 1.83399 0.90318 0.90548 0.90332 0.83725 0.85324 0.87296 0.89011 0.85904 0.82896 0.76534 0.74950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 9.58 71.23 0.68 -0.79 16 2 C -0.20 -4.69 5.91 -19.67 -0.12 -4.80 16 3 C -0.06 -1.61 9.18 22.69 0.21 -1.40 16 4 C -0.11 -3.66 5.90 -19.92 -0.12 -3.77 16 5 C -0.18 -6.65 5.88 -19.99 -0.12 -6.77 16 6 C -0.04 -1.35 9.31 22.18 0.21 -1.15 16 7 C -0.22 -9.69 7.88 22.44 0.18 -9.51 16 8 C 0.11 5.35 5.46 -19.86 -0.11 5.25 16 9 C -0.50 -24.71 8.48 23.29 0.20 -24.52 16 10 H 0.07 3.54 7.45 -2.91 -0.02 3.52 16 11 C 0.01 0.56 4.94 85.36 0.42 0.99 16 12 N -0.77 -36.17 12.30 21.88 0.27 -35.90 16 13 Si 1.11 38.95 30.01 68.60 2.06 41.01 16 14 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 15 H -0.26 -8.49 7.11 99.48 0.71 -7.79 16 16 H -0.27 -9.18 7.11 99.48 0.71 -8.48 16 17 C -0.21 -9.47 5.93 -19.64 -0.12 -9.58 16 18 C 0.30 14.43 14.30 88.33 1.26 15.69 16 19 N -0.53 -25.73 18.54 19.00 0.35 -25.38 16 20 C 0.00 -0.13 9.13 22.75 0.21 0.08 16 21 C 0.11 3.56 10.58 85.03 0.90 4.46 16 22 N -0.56 -17.29 10.38 -192.20 -1.99 -19.28 16 23 C 0.37 9.49 7.73 133.16 1.03 10.52 16 24 N -0.84 -14.35 8.97 -55.40 -0.50 -14.84 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.08 1.06 8.09 -2.38 -0.02 1.04 16 27 H 0.08 0.85 6.55 -2.39 -0.02 0.83 16 28 H 0.15 3.51 6.24 -2.91 -0.02 3.49 16 29 H 0.13 3.99 6.15 -2.91 -0.02 3.97 16 30 H 0.11 4.80 6.48 -2.91 -0.02 4.79 16 31 H 0.30 14.26 6.68 -92.71 -0.62 13.64 16 32 H 0.12 4.33 6.15 -2.91 -0.02 4.31 16 33 H 0.15 4.69 6.16 -2.91 -0.02 4.68 16 34 H 0.41 6.21 8.95 -92.71 -0.83 5.38 16 35 H 0.42 4.56 6.78 -92.71 -0.63 3.93 16 Total: -1.00 -58.25 305.53 4.78 -53.47 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -0.12 Total: 26.25 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 4.72 Total: -25.32 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -1.87 Total: -95.40 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.06 Total: 41.01 kcal Total: -58.25 4.78 -53.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245536979.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.567 kcal (2) G-P(sol) polarization free energy of solvation -58.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds