Wall clock time and date at job start Fri Apr 10 2020 17:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31224 * 119.79445 * 2 1 4 4 C 1.33119 * 121.71177 * 180.02562 * 3 2 1 5 5 C 1.47732 * 119.46114 * 179.97438 * 4 3 2 6 6 C 1.41861 * 119.87409 * 185.00051 * 5 4 3 7 7 C 1.35603 * 119.62017 * 179.97438 * 6 5 4 8 8 C 1.41125 * 119.39253 * 0.02562 * 7 6 5 9 9 C 1.37952 * 133.44442 * 179.97438 * 8 7 6 10 10 N 1.33469 * 107.63724 * 180.02562 * 9 8 7 11 11 C 1.30830 * 109.92298 * 359.97438 * 10 9 8 12 12 N 1.35852 * 109.20489 * 0.02562 * 11 10 9 13 13 C 1.36498 * 132.98058 * 180.29983 * 12 11 10 14 14 C 1.40028 * 121.07107 * 0.02562 * 4 3 2 15 15 C 1.36500 * 119.46906 * 0.02562 * 14 4 3 16 16 C 1.40957 * 119.79843 * 180.02562 * 2 1 3 17 17 C 1.41016 * 120.54126 * 359.97438 * 16 2 1 18 18 H 1.07998 * 119.99702 * 334.64246 * 17 16 2 19 19 C 1.39834 * 120.00017 * 154.63867 * 17 16 2 20 20 N 1.30902 * 120.00535 * 343.60700 * 19 17 16 21 21 Si 1.86804 * 119.99890 * 163.60601 * 19 17 16 22 22 H 1.48497 * 109.47028 * 89.99948 * 21 19 17 23 23 H 1.48498 * 109.47234 * 210.00091 * 21 19 17 24 24 H 1.48495 * 109.47273 * 330.00043 * 21 19 17 25 25 H 1.08997 * 109.46563 * 269.97891 * 1 2 3 26 26 H 1.08996 * 109.46840 * 29.97846 * 1 2 3 27 27 H 1.08995 * 109.46778 * 149.97587 * 1 2 3 28 28 H 1.07991 * 120.19172 * 359.95849 * 6 5 4 29 29 H 1.08004 * 120.29819 * 180.02562 * 7 6 5 30 30 H 1.07999 * 126.18194 * 359.96610 * 9 8 7 31 31 H 1.07995 * 125.39438 * 179.97438 * 11 10 9 32 32 H 1.08001 * 119.79734 * 359.91844 * 13 12 11 33 33 H 1.08004 * 120.26741 * 180.02562 * 14 4 3 34 34 H 1.07995 * 120.78800 * 180.25812 * 15 14 4 35 35 H 0.96990 * 120.00540 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1591 1.1388 0.0000 4 6 3.4895 1.1833 -0.0005 5 6 4.1727 2.4932 -0.0011 6 6 5.5859 2.5530 -0.1088 7 6 6.2076 3.7581 -0.1093 8 6 5.4367 4.9353 -0.0018 9 6 5.7537 6.2775 0.0274 10 7 4.6128 6.9601 0.1444 11 6 3.6007 6.1323 0.1898 12 7 4.0618 4.8574 0.1024 13 6 3.4412 3.6417 0.0964 14 6 4.2519 0.0088 -0.0016 15 6 3.6207 -1.2015 -0.0027 16 6 2.2075 -1.2232 -0.0005 17 6 1.5097 -2.4486 -0.0006 18 1 0.5082 -2.4996 0.4004 19 6 2.1144 -3.5975 -0.5197 20 7 3.1712 -3.4922 -1.2849 21 14 1.4141 -5.2829 -0.1213 22 1 0.4037 -5.6535 -1.1445 23 1 2.5088 -6.2863 -0.1205 24 1 0.7730 -5.2486 1.2177 25 1 -0.3632 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5142 28 1 6.1634 1.6441 -0.1897 29 1 7.2830 3.8164 -0.1912 30 1 6.7460 6.6997 -0.0324 31 1 2.5632 6.4173 0.2829 32 1 2.3653 3.5880 0.1740 33 1 5.3307 0.0601 -0.0016 34 1 4.1877 -2.1206 0.0006 35 1 3.5909 -4.2892 -1.6448 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245898557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:08 Heat of formation + Delta-G solvation = 90.563546 kcal Electronic energy + Delta-G solvation = -20067.788302 eV Core-core repulsion = 17030.554188 eV Total energy + Delta-G solvation = -3037.234114 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.55548 -40.55346 -38.26180 -36.04199 -34.40998 -33.74991 -32.78619 -31.19699 -29.14530 -28.59466 -27.06709 -24.68316 -23.92743 -22.77790 -22.41108 -21.81386 -19.34074 -18.58283 -17.83670 -17.54582 -16.69681 -16.68685 -16.41209 -15.60346 -15.46632 -15.24141 -14.98956 -14.62523 -14.29783 -13.86152 -13.55446 -13.44386 -13.37544 -13.09723 -12.76552 -12.68127 -12.57097 -12.47179 -12.20223 -11.64422 -11.63821 -11.28726 -11.25429 -10.44261 -10.17088 -9.99772 -9.20957 -8.78599 -8.34431 -6.42930 -0.22126 0.17119 0.89389 1.09192 1.40024 1.49958 1.55950 1.76173 2.12460 2.15128 2.45070 2.82016 3.56845 3.61072 3.67222 3.76444 3.94750 4.01679 4.12635 4.31398 4.54359 4.55592 4.63734 4.73302 4.89374 4.97950 4.99759 5.02799 5.10419 5.20357 5.24733 5.39972 5.49069 5.62954 5.70171 5.80788 5.91894 5.98831 6.29334 6.43697 6.66086 6.73368 6.91681 7.64488 8.13511 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.039601 B = 0.003816 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.878407 B = 7335.976445 C = 7968.006269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.012 4.012 3 N -0.461 5.461 4 C -0.009 4.009 5 C -0.013 4.013 6 C -0.124 4.124 7 C -0.069 4.069 8 C -0.025 4.025 9 C -0.035 4.035 10 N -0.482 5.482 11 C 0.121 3.879 12 N -0.362 5.362 13 C 0.025 3.975 14 C -0.124 4.124 15 C -0.163 4.163 16 C 0.046 3.954 17 C -0.451 4.451 18 H 0.097 0.903 19 C 0.035 3.965 20 N -0.805 5.805 21 Si 0.987 3.013 22 H -0.260 1.260 23 H -0.267 1.267 24 H -0.255 1.255 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.151 0.849 29 H 0.183 0.817 30 H 0.205 0.795 31 H 0.233 0.767 32 H 0.167 0.833 33 H 0.130 0.870 34 H 0.118 0.882 35 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.077 4.693 1.654 5.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.157 4.157 3 N -0.170 5.170 4 C -0.143 4.143 5 C -0.016 4.016 6 C -0.145 4.145 7 C -0.088 4.088 8 C -0.135 4.135 9 C -0.190 4.190 10 N -0.196 5.196 11 C -0.153 4.153 12 N -0.032 5.032 13 C -0.097 4.097 14 C -0.144 4.144 15 C -0.188 4.188 16 C 0.041 3.959 17 C -0.479 4.479 18 H 0.115 0.885 19 C -0.183 4.183 20 N -0.429 5.429 21 Si 0.807 3.193 22 H -0.184 1.184 23 H -0.192 1.192 24 H -0.178 1.178 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.169 0.831 29 H 0.200 0.800 30 H 0.221 0.779 31 H 0.249 0.751 32 H 0.184 0.816 33 H 0.147 0.853 34 H 0.136 0.864 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.571 6.250 1.556 6.935 hybrid contribution 0.225 -2.520 -0.087 2.531 sum 2.796 3.730 1.469 4.888 Atomic orbital electron populations 1.20260 0.88719 1.01851 1.01492 1.21514 0.96884 0.87753 1.09560 1.66773 1.09081 1.30614 1.10483 1.18855 0.89061 0.91148 1.15283 1.18164 0.93473 0.90477 0.99499 1.21343 0.92526 0.99473 1.01174 1.20758 1.01345 0.88012 0.98722 1.20213 0.83308 0.97829 1.12135 1.22943 0.98491 0.87261 1.10288 1.69941 0.98982 1.33467 1.17246 1.25547 1.01488 0.76440 1.11790 1.43035 1.08299 1.06993 1.44903 1.21573 0.99216 0.81583 1.07314 1.21504 1.00066 0.92621 1.00235 1.21339 0.94908 0.97063 1.05459 1.18787 0.93156 0.94200 0.89746 1.19954 1.02365 0.92565 1.33018 0.88511 1.26916 0.94276 1.05460 0.91685 1.69856 1.17943 1.34107 1.20989 0.85109 0.78959 0.75044 0.80238 1.18448 1.19151 1.17806 0.91842 0.92097 0.91283 0.83135 0.80000 0.77856 0.75088 0.81595 0.85269 0.86444 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.54 9.58 71.24 0.68 -1.86 16 2 C -0.01 -0.54 6.86 43.32 0.30 -0.24 16 3 N -0.46 -21.24 9.23 -171.03 -1.58 -22.82 16 4 C -0.01 -0.39 6.72 41.89 0.28 -0.11 16 5 C -0.01 -0.47 5.84 -20.27 -0.12 -0.58 16 6 C -0.12 -3.76 9.40 22.56 0.21 -3.55 16 7 C -0.07 -1.79 10.09 22.37 0.23 -1.56 16 8 C -0.03 -0.75 6.80 38.80 0.26 -0.48 16 9 C -0.04 -0.98 12.01 84.38 1.01 0.04 16 10 N -0.48 -14.81 11.19 -197.47 -2.21 -17.01 16 11 C 0.12 3.53 12.78 179.91 2.30 5.83 16 12 N -0.36 -11.66 2.95 -349.67 -1.03 -12.69 16 13 C 0.02 0.87 10.51 83.56 0.88 1.75 16 14 C -0.12 -5.42 9.38 22.30 0.21 -5.21 16 15 C -0.16 -7.90 8.71 22.63 0.20 -7.71 16 16 C 0.05 2.28 5.58 -21.17 -0.12 2.16 16 17 C -0.45 -21.31 8.13 23.34 0.19 -21.13 16 18 H 0.10 4.27 6.86 -2.91 -0.02 4.25 16 19 C 0.03 1.54 5.18 85.22 0.44 1.99 16 20 N -0.81 -37.48 10.95 21.81 0.24 -37.25 16 21 Si 0.99 33.27 29.59 68.60 2.03 35.30 16 22 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 23 H -0.27 -8.68 7.11 99.48 0.71 -7.97 16 24 H -0.25 -8.41 7.11 99.48 0.71 -7.71 16 25 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.07 2.61 6.76 -2.39 -0.02 2.59 16 28 H 0.15 4.02 6.20 -2.92 -0.02 4.00 16 29 H 0.18 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.20 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.23 5.03 8.06 -2.91 -0.02 5.01 16 32 H 0.17 5.84 7.42 -2.91 -0.02 5.82 16 33 H 0.13 4.74 6.17 -2.91 -0.02 4.72 16 34 H 0.12 5.81 6.27 -2.91 -0.02 5.79 16 35 H 0.30 12.33 8.30 -92.72 -0.77 11.56 16 Total: -1.00 -58.91 301.22 5.53 -53.38 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 1.13 Total: 31.76 kcal Atomic # 6 Polarization: -37.62 SS G_CDS: 6.95 Total: -30.67 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -4.58 Total: -89.78 kcal Atomic # 14 Polarization: 33.27 SS G_CDS: 2.03 Total: 35.30 kcal Total: -58.91 5.53 -53.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245898557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.941 kcal (2) G-P(sol) polarization free energy of solvation -58.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds